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MacroAPE 1083:Motif GNTCAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;560;0!02;140;140;140;140!03;0;0;0;560!04;0;560;0;0!05;560;0;0;0!06;0;0;0;560 |macroape_1083_sample_pvalues=11376-118A8;0.665245!11327-...")
 
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411561!10789-110H6;0.809674!10828-111C9;0.807142!10788-110H5;0.772937!10792-110H9;0.579522!10765-110E9;0.681062!10829-111D1;0.944142!10830-111D2;0.968547!10831-111D3;0.895742!10832-111D4;0.929041!10833-111D5;0.827734!10764-110E8;0.864529!10770-110F5;0.613675!10399-106A3;0.933237!10400-106A4;0.967419!10405-106A9;0.921461!10834-111D6;0.963308!10835-111D7;0.764001!10836-111D8;0.922558!10837-111D9;0.809177!10699-109G6;0.486664!10802-111A1;0.695036!10796-110I4;0.946703!10010-101C1;0.579047!10810-111A9;0.846724!10421-106C7;0.791741!10708-109H6;0.163971!12235-129G3;0.456833!12236-129G4;0.469262!12237-129G5;0.838984!10167-103B5;0.754757!10151-102I7;0.618472!10428-106D5;0.448876!10795-110I3;0.465193!10805-111A4;0.826108!10052-101G7;0.91402!10189-103D9;0.613932!10589-108D4;0.087384!10425-106D2;0.911722!10427-106D4;0.834875!10702-109G9;0.466781!10432-106D9;0.948978!10496-107C1;0.683874!10718-109I7;0.81937!10011-101C2;0.978607!10053-101G8;0.518397!10686-109F2;0.956365!10084-102B3;0.254747!10012-101C3;0.698979!10085-102B4;0.662498!10482-107A5;0.660552!10419-106C5;0.947877!10080-102A8;0.973042!10760-110E4;0.87119!10709-109H7;0.718028!10710-109H8;0.803711!10703-109H1;0.983402!10719-109I8;0.691006!10642-109A3;0.556647!10177-103C6;0.319925!10164-103B2;0.55681!10173-103C2;0.420923!10166-103B4;0.399421!10083-102B2;0.31737!10188-103D8;0.505631!10552-107I3;0.576144!10553-107I4;0.672233!10013-101C4;0.958929!10536-107G5;0.241192!10618-108G6;0.0962799!10423-106C9;0.826807!10785-110H2;0.384314!12238-129G6;0.641158!12239-129G7;0.0685801!12240-129G8;0.0726715!10416-106C2;0.180915!10801-110I9;0.818017!10766-110F1;0.956883!10824-111C5;0.89052!10825-111C6;0.985459!10826-111C7;0.961281!10454-106G4;0.926755!10409-106B4;0.818933!10638-108I8;0.82153!10636-108I6;0.547172!10513-107D9;0.547147!10420-106C6;0.602399!10082-102B1;0.907866!10014-101C5;0.548481!10070-101I7;0.298477!10452-106G2;0.792127!10453-106G3;0.173911!10449-106F8;0.363751!10042-101F6;0.329123!10069-101I6;0.676389!10193-103E4;0.656675!10631-108I1;0.796993!10438-106E6;0.697158!10488-107B2;0.354051!10196-103E7;0.838454!10071-101I8;0.882718!10071-101I8;0.259581!10041-101F5;0.342156!10451-106G1;0.149226!10450-106F9;0.633758!10604-108F1;0.900076!10605-108F2;0.676721!10606-108F3;0.948232!10603-108E9;0.571815!10497-107C2;0.59517!10448-106F7;0.778162!10643-109A4;0.797678!10426-106D3;0.273308!10431-106D8;0.962689!10197-103E8;0.831084!10443-106F2;0.627843!10815-111B5;0.843866!10816-111B6;0.709702!10817-111B7;0.935436!10015-101C6;0.664826!10410-106B5;0.295567!10054-101G9;0.890625!10758-110E2;0.57586!10711-109H9;0.618731!10040-101F4;0.976215!10470-106I2;0.480954!10415-106C1;0.850827!10198-103E9;0.673208!10614-108G2;0.526369!10612-108F9;0.642963!10549-107H9;0.826507!10615-108G3;0.694178!10487-107B1;0.983314!10433-106E1;0.794692!10688-109F4;0.531018!10444-106F3;0.714685!10444-106F3;0.423415!10485-107A8;0.196064!10413-106B8;0.153858!10175-103C4;0.106947!10161-103A8;0.678563!12131-128D7;0.565955!10624-108H3;0.47487!10712-109I1;0.569589!10205-103F7;0.399602!10206-103F8;0.644437!10207-103F9;0.512223!10050-101G5;0.707386!10051-101G6;0.87586!10016-101C7;0.901231!10046-101G1;0.585609!10778-110G4;0.383881!10633-108I3;0.673571!10818-111B8;0.730169!10819-111B9;0.724935!10820-111C1;0.665444!10484-107A7;0.664394!10808-111A7;0.921796!10169-103B7;0.244504!10153-102I9;0.559998!13425-144D5;0.517409!13433-144E4;0.769661!13437-144E8;0.83395!11904-125F5;0.673796!11905-125F6;0.768248!10039-101F3;0.905742!10791-110H8;0.483738!10017-101C8;0.400982!10045-101F9;0.366346!10509-107D5;0.97853!10839-111E2;0.147808!10692-109F8;0.60241!10079-102A7;0.803949!10078-102A6;0.992907!10721-110A1;0.729808!10569-108B2;0.793075!10570-108B3;0.474676!10571-108B4;0.301534!10647-109A8;0.342406!10752-110D5;0.873831!10782-110G8;0.700325!10726-110A6;0.381079!10018-101C9;0.482028!10086-102B5;0.465!10182-103D2;0.711744!10165-103B3;0.768173!10499-107C4;0.651659!10408-106B3;0.561743!10019-101D1;0.604873!10068-101I5;0.229089!10075-102A3;0.351239!10077-102A5;0.543362!10727-110A7;0.458772!10775-110G1;0.275701!10412-106B7;0.953022!12231-129F8;0.48982!12232-129F9;0.830693!12233-129G1;0.935849!12234-129G2;0.828761!10414-106B9;0.722309!10170-103B8;0.825379!10183-103D3;0.597294!10150-102I6;0.639401!10174-103C3;0.522733!10155-103A2;0.794815!10038-101F2;0.616244!10838-111E1;0.742089!10759-110E3;0.48213!10514-107E1;0.58301!10465-106H6;0.791119!10691-109F7;0.919549!10843-111E6;0.864623!10844-111E7;0.57575!11747-123G1;0.877248!11748-123G2;0.179568!11749-123G3;0.265123!11750-123G4;0.197511!11751-123G5;0.814334!11840-124H4;0.870599!11752-123G6;0.45318!11753-123G7;0.329511!11754-123G8;0.52208!11755-123G9;0.194361!11756-123H1;0.0505199!11833-124G6;0.3045!11760-123H5;0.253697!11836-124G9;0.351415!11758-123H3;0.597551!11835-124G8;0.737993!11762-123H7;0.249315!11838-124H2;0.395547!11757-123H2;0.546695!11759-123H4;0.723886!11761-123H6;0.330413!11842-124H6;0.362329!11837-124H1;0.669449!10568-108B1;0.357352!13230-141I8;0.217601!13231-141I9;0.662122!10696-109G3;0.607625!10493-107B7;0.119901!10494-107B8;0.908798!10850-111F4;0.547889!10851-111F5;0.335821!10852-111F6;0.127477!10853-111F7;0.322958!10854-111F8;0.932989!10855-111F9;0.982089!10856-111G1;0.463886!10847-111F1;0.675461!10846-111E9;0.968898!10848-111F2;0.276905!10845-111E8;0.832579!10857-111G2;0.849161!10858-111G3;0.704529!10156-103A3;0.957284!11901-125F2;0.553265!11902-125F3;0.570578!11903-125F4;0.563361!10689-109F5;0.699237!10648-109A9;0.764403!10784-110H1;0.0363466!10744-110C6;0.772369!10772-110F7;0.519439!10474-106I6;0.644212!10600-108E6;0.454951!10684-109E9;0.928085!12226-129F3;0.126502!12227-129F4;0.544577!10508-107D4;0.413161!10539-107G8;0.472442!10607-108F4;0.635358!10555-107I6;0.338005!10774-110F9;0.978277!10637-108I7;0.362465!10663-109C6;0.376306!10728-110A8;0.0899782!10729-110A9;0.0526374!10430-106D7;0.951295!10730-110B1;0.584613!10813-111B3;0.214146!10812-111B2;0.895097!10037-101F1;0.348258!10172-103C1;0.499373!10163-103B1;0.56051!10076-102A4;0.499738!10073-102A1;0.641653!10036-101E9;0.380453!10195-103E6;0.550286!10277-104E7;0.588542!10434-106E2;0.760968!10550-107I1;0.925346!10545-107H5;0.739047!10544-107H4;0.508413!10704-109H2;0.850989!10510-107D6;0.127739!10558-107I9;0.320045!10020-101D2;0.0214347!10732-110B3;0.281977!10049-101G4;0.325117!10698-109G5;0.360408!10437-106E5;0.64724!10417-106C3;0.846821!10035-101E8;0.911876!10171-103B9;0.594073!10157-103A4;0.697608!10034-101E7;0.561623!10072-101I9;0.563171!10199-103F1;0.338448!10200-103F2;0.916856!10697-109G4;0.591937!10723-110A3;0.129818!10179-103C8;0.804408!10160-103A7;0.461043!10180-103C9;0.281828!10162-103A9;0.343885!10021-101D3;0.137832!10840-111E3;0.956811!10706-109H4;0.365596!10033-101E6;0.864462!10032-101E5;0.725884!10490-107B4;0.616712!10439-106E7;0.927186!10022-101D4;0.879434!10176-103C5;0.391735!10469-106I1;0.552359!10067-101I4;0.751557!10411-106B6;0.43662!10471-106I3;0.853151!10030-101E3;0.803312!10475-106I7;0.391726!10787-110H4;0.7733!10477-106I9;0.281854!10695-109G2;0.257599!11771-123I7;0.69924!11772-123I8;0.653984!11773-123I9;0.970437!10093-102C3;0.295708!10442-106F1;0.886994!10442-106F1;0.429901!10201-103F3;0.373411!10639-108I9;0.96221!11843-124H7;0.553061!11841-124H5;0.037901!10693-109F9;0.0775176!10436-106E4;0.859199!10483-107A6;0.933066!10282-104F3;0.428168!10023-101D5;0.849829!10066-101I3;0.919344!10065-101I2;0.585443!10800-110I8;0.836293!10610-108F7;0.892344!10841-111E4;0.843717!10541-107H1;0.486671!10842-111E5;0.471181!10562-108A4;0.760618!10024-101D6;0.584247!10064-101I1;0.290492!10609-108F6;0.555477!10048-101G3;0.173598!10781-110G7;0.297364!10181-103D1;0.750155!10159-103A6;0.835383!10056-101H2;0.626368!10737-110B8;0.863178!10025-101D7;0.873319!10044-101F8;0.405037!10424-106D1;0.301608!10463-106H4;0.381164!10616-108G4;0.425222!10486-107A9;0.354076!10062-101H8;0.73253!10202-103F4;0.379554!10158-103A5;0.737838!10441-106E9;0.684758!10031-101E4;0.620397!10063-101H9;0.6034!10063-101H9;0.304177!11763-123H8;0.383601!11765-123I1;0.503987!11768-123I4;0.547404!10807-111A6;0.637136!10790-110H7;0.838399!10798-110I6;0.690517!10786-110H3;0.537501!10591-108D6;0.504285!10593-108D8;0.698458!10590-108D5;0.505984!10026-101D8;0.862724!10096-102C6;0.451465!10168-103B6;0.23457!10154-103A1;0.888577!10209-103G2;0.556084!10061-101H7;0.704223!10027-101D9;0.347199!10043-101F7;0.234922!10783-110G9;0.138004!10028-101E1;0.25728!10060-101H6;0.232225!10203-103F5;0.614001!10059-101H5;0.776112!10047-101G2;0.793397!10029-101E2;0.210055!10058-101H4;0.912873!10418-106C4;0.509436!10492-107B6;0.893054!10694-109G1;0.790506!10797-110I5;0.458714!10057-101H3;0.853409!10100-102D1;0.655526!10055-101H1;0.249323!10204-103F6;0.509475!10191-103E2;0.245314!10563-108A5;0.344629
|name=motif_GNTCAT
|name=motif_GNTCAT
|tomtom_result=NFE2L1::MafG#MA0089.1;-1;0.011824;5.6282;1;5;GATCAT;GTCATG;-!RXR::RAR_DR5#MA0159.1;1;0.0137077;6.52486;1;6;GATCAT;AGGTCATGGAGAGGTCA;+!TOD6#MA0350.1;7;0.0146093;6.95403;1;6;GATCAT;AGGCACAGCTCATCGCGTTTT;+!RXRA::VDR#MA0074.1;1;0.0165922;7.89787;1;6;GATCAT;GGGTCAACGAGTTCA;+!ZAP1#MA0440.1;8;0.0165922;7.89787;1;6;GATCAT;ACCTTAAAGGTCATG;+!DOT6#MA0351.1;7;0.0190341;9.06024;1;6;GATCAT;TTCTGCACCTCATCGCATCCT;+
}}
}}

Latest revision as of 13:45, 7 September 2012

Full Name: motif_GNTCAT

Motif matrix
POACGT
01005600
02140140140140
03000560
04056000
05560000
06000560

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NFE2L1::MafG#MA0089.1-10.0118245.628215GATCATGTCATG-
RXR::RAR_DR5#MA0159.110.01370776.5248616GATCATAGGTCATGGAGAGGTCA+
TOD6#MA0350.170.01460936.9540316GATCATAGGCACAGCTCATCGCGTTTT+
RXRA::VDR#MA0074.110.01659227.8978716GATCATGGGTCAACGAGTTCA+
ZAP1#MA0440.180.01659227.8978716GATCATACCTTAAAGGTCATG+
DOT6#MA0351.170.01903419.0602416GATCATTTCTGCACCTCATCGCATCCT+
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