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MacroAPE 1083:AAACCCCCCC,motif448: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;1025.352;87.264;23.028;76.356!2;1010.808;88.476;67.872;44.844!3;921.12;163.62;48.48;78.78!4;116.352;959.904;69.084;66.66!5;92.112;997.476;52...")
 
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10H6;0.0701266!10828-111C9;0.0259504!10788-110H5;0.115438!10792-110H9;0.0847824!10765-110E9;0.0672069!10829-111D1;0.0667199!10830-111D2;0.293539!10831-111D3;0.0696705!10832-111D4;0.162913!10833-111D5;0.172822!10764-110E8;0.31045!10770-110F5;0.0625939!10399-106A3;0.00508227!10400-106A4;0.0718766!10405-106A9;0.0899524!10834-111D6;0.10303!10835-111D7;0.0298735!10836-111D8;0.872083!10837-111D9;0.334429!10699-109G6;0.123656!10802-111A1;0.182524!10796-110I4;0.173724!10010-101C1;0.630186!10810-111A9;0.0497524!10421-106C7;0.186655!10708-109H6;0.130247!12235-129G3;0.950995!12236-129G4;0.178223!12237-129G5;0.197149!10167-103B5;0.0741626!10151-102I7;0.429687!10428-106D5;0.226395!10795-110I3;0.098133!10805-111A4;0.328277!10052-101G7;0.819576!10189-103D9;0.221673!10589-108D4;0.945128!10425-106D2;0.386949!10427-106D4;0.0804646!10702-109G9;0.262237!10432-106D9;0.970697!10496-107C1;0.662631!10718-109I7;0.0738861!10011-101C2;0.0947215!10053-101G8;0.0528063!10686-109F2;0.791886!10084-102B3;0.815412!10012-101C3;0.232279!10085-102B4;0.0995213!10482-107A5;0.482822!10419-106C5;0.597631!10080-102A8;0.637071!10760-110E4;0.445792!10709-109H7;0.869502!10710-109H8;0.255353!10703-109H1;0.612842!10719-109I8;0.00853783!10642-109A3;0.03319!10177-103C6;0.211031!10164-103B2;0.320371!10173-103C2;0.150201!10166-103B4;0.957225!10083-102B2;0.749298!10188-103D8;0.416566!10552-107I3;0.106377!10553-107I4;0.78547!10013-101C4;0.858362!10536-107G5;0.166573!10618-108G6;0.915336!10423-106C9;0.0365458!10785-110H2;0.777026!12238-129G6;0.349891!12239-129G7;0.162397!12240-129G8;0.519523!10416-106C2;0.0658445!10801-110I9;0.0797762!10766-110F1;0.0315489!10824-111C5;0.295758!10825-111C6;0.87482!10826-111C7;0.88904!10454-106G4;0.885197!10409-106B4;0.763164!10638-108I8;0.0571486!10636-108I6;0.360069!10513-107D9;0.809197!10420-106C6;0.529269!10082-102B1;0.534967!10014-101C5;0.648416!10070-101I7;0.190166!10452-106G2;0.705214!10453-106G3;0.0183895!10449-106F8;0.0456516!10042-101F6;0.0325456!10069-101I6;0.152328!10193-103E4;0.099234!10631-108I1;0.16701!10438-106E6;0.267664!10488-107B2;0.334557!10196-103E7;0.524675!10071-101I8;0.641065!10071-101I8;0.608157!10041-101F5;0.909062!10451-106G1;0.542345!10450-106F9;0.00355666!10604-108F1;0.0377366!10605-108F2;0.515017!10606-108F3;0.549437!10603-108E9;0.320257!10497-107C2;0.74926!10448-106F7;0.316559!10643-109A4;0.874818!10426-106D3;0.483059!10431-106D8;0.538086!10197-103E8;0.873436!10443-106F2;0.247305!10815-111B5;0.248467!10816-111B6;0.175966!10817-111B7;0.196524!10015-101C6;0.18371!10410-106B5;0.126077!10054-101G9;0.984737!10758-110E2;0.659366!10711-109H9;0.536109!10040-101F4;0.684559!10470-106I2;0.165346!10415-106C1;0.994016!10198-103E9;0.656338!10614-108G2;0.117548!10612-108F9;0.90891!10549-107H9;0.432338!10615-108G3;0.708841!10487-107B1;0.630988!10433-106E1;0.987524!10688-109F4;0.0302004!10444-106F3;0.682987!10444-106F3;0.871464!10485-107A8;0.71718!10413-106B8;0.224464!10175-103C4;0.822006!10161-103A8;0.270104!12131-128D7;0.17084!10624-108H3;0.162231!10712-109I1;0.110103!10205-103F7;0.0823407!10206-103F8;0.0688342!10207-103F9;0.00201671!10050-101G5;0.0640094!10051-101G6;0.141368!10016-101C7;0.0173687!10046-101G1;0.0342244!10778-110G4;0.386775!10633-108I3;0.363293!10818-111B8;0.64147!10819-111B9;0.50408!10820-111C1;0.531791!10484-107A7;0.456606!10808-111A7;0.910434!10169-103B7;0.317639!10153-102I9;0.407394!13425-144D5;0.221521!13433-144E4;0.0170483!13437-144E8;0.0117967!11904-125F5;0.0155985!11905-125F6;0.702795!10039-101F3;0.962536!10791-110H8;0.133453!10017-101C8;0.445958!10045-101F9;0.201012!10509-107D5;0.958073!10839-111E2;0.0180187!10692-109F8;0.578044!10079-102A7;0.507694!10078-102A6;0.0313262!10721-110A1;0.0405057!10569-108B2;0.700253!10570-108B3;0.487987!10571-108B4;0.810466!10647-109A8;0.974366!10752-110D5;0.95533!10782-110G8;0.0578247!10726-110A6;0.676357!10018-101C9;0.828087!10086-102B5;0.0242439!10182-103D2;0.883807!10165-103B3;0.574917!10499-107C4;0.550015!10408-106B3;0.308679!10019-101D1;0.749025!10068-101I5;0.297087!10075-102A3;0.568301!10077-102A5;0.111631!10727-110A7;0.715783!10775-110G1;0.244099!10412-106B7;0.10986!12231-129F8;0.708301!12232-129F9;0.998623!12233-129G1;0.682863!12234-129G2;0.858535!10414-106B9;0.938487!10170-103B8;0.957208!10183-103D3;0.27772!10150-102I6;0.187657!10174-103C3;0.150293!10155-103A2;0.669441!10038-101F2;0.550943!10838-111E1;0.257174!10759-110E3;0.0734618!10514-107E1;0.159744!10465-106H6;0.204536!10691-109F7;0.521006!10843-111E6;0.0247706!10844-111E7;0.0801214!11747-123G1;0.0313541!11748-123G2;0.871216!11749-123G3;0.530033!11750-123G4;0.766332!11751-123G5;0.43689!11840-124H4;0.980105!11752-123G6;0.998103!11753-123G7;0.351803!11754-123G8;0.562459!11755-123G9;0.886052!11756-123H1;0.402918!11833-124G6;0.842177!11760-123H5;0.427045!11836-124G9;0.883137!11758-123H3;0.628942!11835-124G8;0.802097!11762-123H7;0.507492!11838-124H2;0.758633!11757-123H2;0.688436!11759-123H4;0.448918!11761-123H6;0.361196!11842-124H6;0.578757!11837-124H1;0.0491512!10568-108B1;0.566824!13230-141I8;0.444083!13231-141I9;0.892828!10696-109G3;0.909748!10493-107B7;0.134073!10494-107B8;0.859458!10850-111F4;0.753127!10851-111F5;0.0779943!10852-111F6;0.330383!10853-111F7;0.743679!10854-111F8;0.984066!10855-111F9;0.832091!10856-111G1;0.774217!10847-111F1;0.663313!10846-111E9;0.824834!10848-111F2;0.39575!10845-111E8;0.916351!10857-111G2;0.946757!10858-111G3;0.283285!10156-103A3;0.420726!11901-125F2;0.17658!11902-125F3;0.965085!11903-125F4;0.383191!10689-109F5;0.996416!10648-109A9;0.953006!10784-110H1;0.623449!10744-110C6;0.549539!10772-110F7;0.808624!10474-106I6;0.0242374!10600-108E6;0.0277529!10684-109E9;0.732715!12226-129F3;0.526637!12227-129F4;0.543458!10508-107D4;0.0718454!10539-107G8;0.169884!10607-108F4;0.0629694!10555-107I6;0.0643217!10774-110F9;0.0983937!10637-108I7;0.0847324!10663-109C6;0.321227!10728-110A8;0.142538!10729-110A9;0.144769!10430-106D7;0.439597!10730-110B1;0.195797!10813-111B3;0.0269212!10812-111B2;0.955382!10037-101F1;0.10606!10172-103C1;0.108789!10163-103B1;0.621981!10076-102A4;0.20281!10073-102A1;0.288375!10036-101E9;0.989879!10195-103E6;0.0948749!10277-104E7;0.189137!10434-106E2;0.191386!10550-107I1;0.957332!10545-107H5;0.373707!10544-107H4;0.960608!10704-109H2;0.473521!10510-107D6;0.938833!10558-107I9;0.318173!10020-101D2;0.231787!10732-110B3;0.167881!10049-101G4;0.307762!10698-109G5;0.0141449!10437-106E5;0.701212!10417-106C3;0.151117!10035-101E8;0.211516!10171-103B9;0.130206!10157-103A4;0.330733!10034-101E7;0.150067!10072-101I9;0.117433!10199-103F1;0.96118!10200-103F2;0.00490131!10697-109G4;0.0607317!10723-110A3;0.630896!10179-103C8;0.614721!10160-103A7;0.224736!10180-103C9;0.809121!10162-103A9;0.713486!10021-101D3;0.966104!10840-111E3;0.201636!10706-109H4;0.0809501!10033-101E6;0.356742!10032-101E5;0.413076!10490-107B4;0.0894409!10439-106E7;0.604363!10022-101D4;0.842755!10176-103C5;0.114332!10469-106I1;0.260671!10067-101I4;0.954423!10411-106B6;0.305066!10471-106I3;0.568956!10030-101E3;0.484668!10475-106I7;0.499515!10787-110H4;0.157378!10477-106I9;0.0298058!10695-109G2;0.0600617!11771-123I7;0.946975!11772-123I8;0.563905!11773-123I9;0.869474!10093-102C3;0.475157!10442-106F1;0.00807508!10442-106F1;0.430317!10201-103F3;0.398442!10639-108I9;0.191391!11843-124H7;0.416537!11841-124H5;0.793616!10693-109F9;0.174211!10436-106E4;0.116548!10483-107A6;0.744242!10282-104F3;0.349616!10023-101D5;9.22487e-05!10066-101I3;0.000464992!10065-101I2;0.569284!10800-110I8;0.37451!10610-108F7;0.0109142!10841-111E4;0.923071!10541-107H1;0.289454!10842-111E5;0.292361!10562-108A4;0.0819137!10024-101D6;0.0488514!10064-101I1;0.105665!10609-108F6;0.524021!10048-101G3;0.116821!10781-110G7;0.037657!10181-103D1;0.72699!10159-103A6;0.432605!10056-101H2;0.536547!10737-110B8;0.598722!10025-101D7;0.716965!10044-101F8;0.502364!10424-106D1;0.8335!10463-106H4;0.152214!10616-108G4;0.433329!10486-107A9;0.268338!10062-101H8;0.532604!10202-103F4;0.676688!10158-103A5;0.0301343!10441-106E9;0.175934!10031-101E4;0.109464!10063-101H9;0.0729442!10063-101H9;0.621204!11763-123H8;0.258968!11765-123I1;0.592427!11768-123I4;0.569245!10807-111A6;0.439488!10790-110H7;0.11414!10798-110I6;0.0400792!10786-110H3;0.148776!10591-108D6;0.0705258!10593-108D8;0.0651368!10590-108D5;0.383244!10026-101D8;0.0391909!10096-102C6;0.580038!10168-103B6;0.935585!10154-103A1;0.495109!10209-103G2;0.200231!10061-101H7;0.0485666!10027-101D9;0.906932!10043-101F7;0.155343!10783-110G9;0.0919508!10028-101E1;0.756291!10060-101H6;0.175183!10203-103F5;0.209345!10059-101H5;0.015116!10047-101G2;0.0282843!10029-101E2;0.185429!10058-101H4;0.380201!10418-106C4;0.584968!10492-107B6;0.325755!10694-109G1;0.933354!10797-110I5;0.802055!10057-101H3;0.101303!10100-102D1;0.276553!10055-101H1;0.242027!10204-103F6;0.741754!10191-103E2;0.146753!10563-108A5;0.480879
|name=AAACCCCCCC,motif448,CNhs10859,T:1212.0(25.67%),B:14114.0(18.58%),P:1e-32
|name=AAACCCCCCC,motif448,CNhs10859,T:1212.0(25.67%),B:14114.0(18.58%),P:1e-32
|tomtom_result=RREB1#MA0073.1;4;0.000396444;0.188708;0.358219;10;AAACCCCCCC;CCCCAAACCACCCCCCCCCC;+!SP1#MA0079.2;0;0.00175541;0.835574;0.358219;10;AAACCCCCCC;ACCCCGCCCC;-!Macho-1#MA0118.1;-1;0.00181268;0.862836;0.358219;9;AAACCCCCCC;GAACCCCCA;-!REL#MA0101.1;2;0.00284215;1.35286;0.358219;8;AAACCCCCCC;GGAAATCCCC;-!MIG2#MA0338.1;-3;0.00310438;1.47768;0.358219;7;AAACCCCCCC;CCCCGCA;+!Pax4#MA0068.1;19;0.00316136;1.50481;0.358219;10;AAACCCCCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!MIG1#MA0337.1;-3;0.00326571;1.55448;0.358219;7;AAACCCCCCC;CCCCCGC;+!DAL81#MA0290.1;0;0.00359135;1.70948;0.358219;10;AAACCCCCCC;AATCCCGCCCGCGGCTTTT;-!ADR1#MA0268.1;-2;0.00360702;1.71694;0.358219;7;AAACCCCCCC;ACCCCAC;+!dl_2#MA0023.1;2;0.00408577;1.94482;0.358219;8;AAACCCCCCC;GGAAAACCCC;-!dl_1#MA0022.1;3;0.00416653;1.98327;0.358219;9;AAACCCCCCC;CGGAAAAACCCC;-!RELA#MA0107.1;2;0.0054367;2.58787;0.415151;8;AAACCCCCCC;GGAAATTCCC;-!MSN2#MA0341.1;-3;0.00570667;2.71637;0.415151;5;AAACCCCCCC;CCCCT;-!MIG3#MA0339.1;-3;0.0070377;3.34995;0.443717;7;AAACCCCCCC;CCCCGCA;+!YPR022C#MA0436.1;-3;0.0070377;3.34995;0.443717;7;AAACCCCCCC;CCCCACG;+!SP1#MA0079.2;-3;0.0100941;4.80477;0.59664;7;AAACCCCCCC;CCCCGCCCCC;+!CHA4#MA0283.1;-2;0.0134619;6.40785;0.691347;8;AAACCCCCCC;TCTCCGCC;-!btd#MA0443.1;-1;0.0139843;6.65652;0.691347;9;AAACCCCCCC;TCCGCCCCCT;-!NFKB1#MA0105.1;3;0.0141706;6.74522;0.691347;8;AAACCCCCCC;GGGGAATCCCC;-!opa#MA0456.1;-1;0.0146204;6.95932;0.691347;9;AAACCCCCCC;GACCCCCCGCTG;+!YML081W#MA0431.1;-2;0.0164874;7.84801;0.712703;8;AAACCCCCCC;ACCCCGCAC;+!AFT2#MA0270.1;-1;0.0167989;7.99626;0.712703;8;AAACCCCCCC;CACACCCC;+!USV1#MA0413.1;0;0.0173328;8.25043;0.712703;10;AAACCCCCCC;AAATTCCCCCTGAATTTGTG;+!MSN4#MA0342.1;-3;0.0182116;8.6687;0.717633;5;AAACCCCCCC;CCCCT;-
}}
}}

Latest revision as of 13:38, 7 September 2012

Full Name: AAACCCCCCC,motif448,CNhs10859,T:1212.0(25.67%),B:14114.0(18.58%),P:1e-32

Motif matrix
POACGT
11025.35287.26423.02876.356
21010.80888.47667.87244.844
3921.12163.6248.4878.78
4116.352959.90469.08466.66
592.112997.47652.11670.296
6140.592900.516118.77652.116
755.7521049.59254.5452.116
884.84934.45293.32499.384
9121.2950.20853.32887.264
1081.204952.63284.8493.324

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
RREB1#MA0073.140.0003964440.1887080.35821910AAACCCCCCCCCCCAAACCACCCCCCCCCC+
SP1#MA0079.200.001755410.8355740.35821910AAACCCCCCCACCCCGCCCC-
Macho-1#MA0118.1-10.001812680.8628360.3582199AAACCCCCCCGAACCCCCA-
REL#MA0101.120.002842151.352860.3582198AAACCCCCCCGGAAATCCCC-
MIG2#MA0338.1-30.003104381.477680.3582197AAACCCCCCCCCCCGCA+
Pax4#MA0068.1190.003161361.504810.35821910AAACCCCCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
MIG1#MA0337.1-30.003265711.554480.3582197AAACCCCCCCCCCCCGC+
DAL81#MA0290.100.003591351.709480.35821910AAACCCCCCCAATCCCGCCCGCGGCTTTT-
ADR1#MA0268.1-20.003607021.716940.3582197AAACCCCCCCACCCCAC+
dl_2#MA0023.120.004085771.944820.3582198AAACCCCCCCGGAAAACCCC-
dl_1#MA0022.130.004166531.983270.3582199AAACCCCCCCCGGAAAAACCCC-
RELA#MA0107.120.00543672.587870.4151518AAACCCCCCCGGAAATTCCC-
MSN2#MA0341.1-30.005706672.716370.4151515AAACCCCCCCCCCCT-
MIG3#MA0339.1-30.00703773.349950.4437177AAACCCCCCCCCCCGCA+
YPR022C#MA0436.1-30.00703773.349950.4437177AAACCCCCCCCCCCACG+
SP1#MA0079.2-30.01009414.804770.596647AAACCCCCCCCCCCGCCCCC+
CHA4#MA0283.1-20.01346196.407850.6913478AAACCCCCCCTCTCCGCC-
btd#MA0443.1-10.01398436.656520.6913479AAACCCCCCCTCCGCCCCCT-
NFKB1#MA0105.130.01417066.745220.6913478AAACCCCCCCGGGGAATCCCC-
opa#MA0456.1-10.01462046.959320.6913479AAACCCCCCCGACCCCCCGCTG+
YML081W#MA0431.1-20.01648747.848010.7127038AAACCCCCCCACCCCGCAC+
AFT2#MA0270.1-10.01679897.996260.7127038AAACCCCCCCCACACCCC+
USV1#MA0413.100.01733288.250430.71270310AAACCCCCCCAAATTCCCCCTGAATTTGTG+
MSN4#MA0342.1-30.01821168.66870.7176335AAACCCCCCCCCCCT-
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