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MacroAPE 1083:12-CSCCYTTTWA: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;43.539;306.666;187.407;93.388!2;21.454;248.614;275.747;85.185!3;22.716;356.515;232.839;18.93!4;8.834;397.53;27.133;197.503!5;11.989;307.928;...")
 
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4.14791e-06!11369-118A1;0.00126207!11441-118I1;2.70757e-06!10007-101B4;0.000110338!11520-119H8;0.19097!11600-120H7;7.58718e-05!11681-122H7;5.85865e-06!11216-116B1;2.79051e-07!12179-129A1;0.000856123!12180-129A2;0.000120263!12181-129A3;5.01282e-05!12176-128I7;0.000657733!12177-128I8;1.03955e-05!12182-129A4;2.07026e-05!12183-129A5;3.13059e-05!12184-129A6;4.23122e-05!10809-111A8;0.00783841!10597-108E3;0.387539!10717-109I6;0.824872!10455-106G5;0.548375!10534-107G3;0.000116309!10429-106D6;0.00264153!10464-106H5;0.00428008!10827-111C8;0.0430857!10789-110H6;0.000448002!10828-111C9;0.000370038!10788-110H5;3.71052e-05!10792-110H9;0.00739821!10765-110E9;8.87925e-06!10829-111D1;7.22637e-05!10830-111D2;0.000897511!10831-111D3;0.00150441!10832-111D4;0.00147371!10833-111D5;0.000230796!10764-110E8;0.00201429!10770-110F5;0.0149707!10399-106A3;5.3632e-05!10400-106A4;0.00020209!10405-106A9;0.000115511!10834-111D6;0.000166674!10835-111D7;0.000859718!10836-111D8;0.00124874!10837-111D9;0.00216757!10699-109G6;0.000631663!10802-111A1;0.00239355!10796-110I4;0.00925462!10010-101C1;0.957061!10810-111A9;0.353231!10421-106C7;0.174205!10708-109H6;0.000281513!12235-129G3;0.921892!12236-129G4;0.0927967!12237-129G5;0.746254!10167-103B5;0.674806!10151-102I7;0.812838!10428-106D5;0.958648!10795-110I3;0.000366939!10805-111A4;0.00491697!10052-101G7;0.781352!10189-103D9;0.0260326!10589-108D4;0.683971!10425-106D2;0.196552!10427-106D4;0.73417!10702-109G9;0.0103039!10432-106D9;0.774119!10496-107C1;0.761308!10718-109I7;0.916574!10011-101C2;0.0054627!10053-101G8;0.173242!10686-109F2;0.0580346!10084-102B3;0.637522!10012-101C3;0.350929!10085-102B4;0.82037!10482-107A5;0.202271!10419-106C5;0.592295!10080-102A8;0.241489!10760-110E4;0.0102589!10709-109H7;0.54002!10710-109H8;0.32836!10703-109H1;0.453347!10719-109I8;0.422749!10642-109A3;0.817111!10177-103C6;0.810316!10164-103B2;0.963686!10173-103C2;0.748559!10166-103B4;0.76356!10083-102B2;0.898811!10188-103D8;0.6869!10552-107I3;0.916217!10553-107I4;0.0288702!10013-101C4;0.00129051!10536-107G5;0.142387!10618-108G6;0.0119709!10423-106C9;0.520519!10785-110H2;0.518574!12238-129G6;0.626534!12239-129G7;0.0129407!12240-129G8;0.0229032!10416-106C2;0.45264!10801-110I9;0.0111443!10766-110F1;0.00016214!10824-111C5;0.00542362!10825-111C6;0.00202219!10826-111C7;0.00340034!10454-106G4;0.0031168!10409-106B4;0.00921522!10638-108I8;0.0231557!10636-108I6;0.955676!10513-107D9;0.326111!10420-106C6;0.496314!10082-102B1;0.168214!10014-101C5;0.0461518!10070-101I7;0.160694!10452-106G2;0.0478737!10453-106G3;0.142419!10449-106F8;0.0301069!10042-101F6;0.0211014!10069-101I6;0.632949!10193-103E4;0.220724!10631-108I1;0.607485!10438-106E6;0.000573686!10488-107B2;0.751033!10196-103E7;0.658112!10071-101I8;0.229855!10071-101I8;0.207926!10041-101F5;0.43273!10451-106G1;0.689724!10450-106F9;0.82623!10604-108F1;0.609584!10605-108F2;0.30605!10606-108F3;0.220327!10603-108E9;0.258124!10497-107C2;0.579236!10448-106F7;0.462738!10643-109A4;0.83421!10426-106D3;0.858236!10431-106D8;0.175479!10197-103E8;0.225836!10443-106F2;0.343744!10815-111B5;0.670182!10816-111B6;0.88703!10817-111B7;0.862569!10015-101C6;0.888796!10410-106B5;0.0575731!10054-101G9;0.0662606!10758-110E2;0.0636839!10711-109H9;0.586489!10040-101F4;0.61904!10470-106I2;0.451567!10415-106C1;0.63908!10198-103E9;0.19035!10614-108G2;0.0881184!10612-108F9;0.257278!10549-107H9;0.465094!10615-108G3;0.386922!10487-107B1;0.293734!10433-106E1;0.25092!10688-109F4;0.884174!10444-106F3;0.407494!10444-106F3;0.369867!10485-107A8;0.3143!10413-106B8;0.606506!10175-103C4;0.140696!10161-103A8;0.879469!12131-128D7;0.858888!10624-108H3;0.00187525!10712-109I1;0.000356245!10205-103F7;0.011699!10206-103F8;0.179634!10207-103F9;0.217782!10050-101G5;0.0268764!10051-101G6;0.00658438!10016-101C7;0.105536!10046-101G1;0.229978!10778-110G4;0.0888648!10633-108I3;0.480757!10818-111B8;0.0122095!10819-111B9;0.476037!10820-111C1;0.329641!10484-107A7;0.390309!10808-111A7;0.579279!10169-103B7;0.00629504!10153-102I9;0.976636!13425-144D5;0.828053!13433-144E4;0.0798964!13437-144E8;0.250481!11904-125F5;0.515624!11905-125F6;0.0227838!10039-101F3;0.426848!10791-110H8;0.789589!10017-101C8;0.421739!10045-101F9;0.450351!10509-107D5;0.00791435!10839-111E2;0.487235!10692-109F8;0.18716!10079-102A7;0.0492849!10078-102A6;0.161969!10721-110A1;0.189396!10569-108B2;0.92858!10570-108B3;0.459873!10571-108B4;0.690263!10647-109A8;0.887835!10752-110D5;0.553105!10782-110G8;0.0726224!10726-110A6;0.344752!10018-101C9;0.160005!10086-102B5;0.231474!10182-103D2;0.0131797!10165-103B3;0.270409!10499-107C4;0.615768!10408-106B3;0.439629!10019-101D1;0.269354!10068-101I5;0.232336!10075-102A3;0.618529!10077-102A5;0.2308!10727-110A7;0.413663!10775-110G1;0.0299423!10412-106B7;8.60058e-06!12231-129F8;0.632031!12232-129F9;0.00578942!12233-129G1;0.03765!12234-129G2;0.0691908!10414-106B9;0.313184!10170-103B8;0.16762!10183-103D3;0.247392!10150-102I6;0.409849!10174-103C3;0.704174!10155-103A2;0.565982!10038-101F2;0.50896!10838-111E1;0.405523!10759-110E3;0.324535!10514-107E1;0.245667!10465-106H6;0.719041!10691-109F7;0.602574!10843-111E6;0.00403688!10844-111E7;0.539942!11747-123G1;0.177157!11748-123G2;0.406124!11749-123G3;0.755207!11750-123G4;0.431517!11751-123G5;0.82962!11840-124H4;0.520116!11752-123G6;0.267603!11753-123G7;0.589346!11754-123G8;0.307525!11755-123G9;0.837995!11756-123H1;0.585762!11833-124G6;0.784481!11760-123H5;0.23768!11836-124G9;0.286644!11758-123H3;0.641008!11835-124G8;0.653412!11762-123H7;0.126502!11838-124H2;0.193799!11757-123H2;0.12452!11759-123H4;0.163063!11761-123H6;0.81644!11842-124H6;0.266092!11837-124H1;0.314882!10568-108B1;0.219522!13230-141I8;0.331147!13231-141I9;0.546158!10696-109G3;0.248962!10493-107B7;0.0630026!10494-107B8;0.365513!10850-111F4;0.703987!10851-111F5;0.0740152!10852-111F6;0.635085!10853-111F7;0.39591!10854-111F8;0.416096!10855-111F9;0.591285!10856-111G1;0.20172!10847-111F1;0.105756!10846-111E9;0.933002!10848-111F2;0.879715!10845-111E8;0.299672!10857-111G2;0.504246!10858-111G3;0.474558!10156-103A3;0.63191!11901-125F2;0.805185!11902-125F3;0.0197822!11903-125F4;0.0381285!10689-109F5;0.00975562!10648-109A9;0.382054!10784-110H1;0.14373!10744-110C6;0.125882!10772-110F7;0.0113203!10474-106I6;0.00595398!10600-108E6;8.38223e-08!10684-109E9;0.0263895!12226-129F3;0.149856!12227-129F4;0.00955611!10508-107D4;0.00846878!10539-107G8;0.459915!10607-108F4;0.541537!10555-107I6;0.857605!10774-110F9;0.921016!10637-108I7;0.626853!10663-109C6;0.995739!10728-110A8;0.200497!10729-110A9;0.719748!10430-106D7;0.168027!10730-110B1;0.00091143!10813-111B3;0.222709!10812-111B2;0.145205!10037-101F1;0.486033!10172-103C1;0.835437!10163-103B1;0.327061!10076-102A4;0.951762!10073-102A1;0.891285!10036-101E9;0.965201!10195-103E6;0.800253!10277-104E7;0.733118!10434-106E2;0.179744!10550-107I1;0.716667!10545-107H5;0.485704!10544-107H4;0.994313!10704-109H2;0.992273!10510-107D6;0.583687!10558-107I9;0.0114697!10020-101D2;0.293547!10732-110B3;0.133495!10049-101G4;0.0664511!10698-109G5;0.250218!10437-106E5;0.425661!10417-106C3;0.82996!10035-101E8;0.0127125!10171-103B9;0.734744!10157-103A4;0.522511!10034-101E7;0.7594!10072-101I9;0.828344!10199-103F1;0.889682!10200-103F2;0.811717!10697-109G4;0.300137!10723-110A3;0.256911!10179-103C8;0.111489!10160-103A7;0.833257!10180-103C9;0.291056!10162-103A9;0.498316!10021-101D3;0.182761!10840-111E3;0.115801!10706-109H4;6.059e-06!10033-101E6;0.345278!10032-101E5;0.991419!10490-107B4;0.961!10439-106E7;0.689793!10022-101D4;0.482172!10176-103C5;0.310755!10469-106I1;0.471076!10067-101I4;0.0473476!10411-106B6;0.0979675!10471-106I3;0.874534!10030-101E3;0.114399!10475-106I7;0.145979!10787-110H4;0.279327!10477-106I9;0.258857!10695-109G2;0.360859!11771-123I7;0.0049876!11772-123I8;0.0177621!11773-123I9;0.0689865!10093-102C3;0.000454785!10442-106F1;0.587654!10442-106F1;0.0109855!10201-103F3;0.0181527!10639-108I9;0.281459!11843-124H7;0.255199!11841-124H5;0.0164723!10693-109F9;0.831677!10436-106E4;0.258921!10483-107A6;0.32439!10282-104F3;0.758522!10023-101D5;0.846223!10066-101I3;0.444141!10065-101I2;0.165936!10800-110I8;0.235551!10610-108F7;0.858026!10841-111E4;0.565632!10541-107H1;0.633446!10842-111E5;0.165151!10562-108A4;0.745774!10024-101D6;0.535137!10064-101I1;0.211582!10609-108F6;0.0522814!10048-101G3;0.207205!10781-110G7;0.17791!10181-103D1;0.970691!10159-103A6;0.236558!10056-101H2;0.862684!10737-110B8;0.0506356!10025-101D7;0.211715!10044-101F8;0.774708!10424-106D1;0.0430567!10463-106H4;1.60329e-06!10616-108G4;0.985753!10486-107A9;0.694165!10062-101H8;0.0656452!10202-103F4;0.0738981!10158-103A5;0.982628!10441-106E9;0.81135!10031-101E4;0.89684!10063-101H9;0.747976!10063-101H9;0.519548!11763-123H8;0.361013!11765-123I1;0.353905!11768-123I4;0.163509!10807-111A6;0.592075!10790-110H7;0.736334!10798-110I6;0.772201!10786-110H3;0.372136!10591-108D6;0.05124!10593-108D8;0.586686!10590-108D5;0.868828!10026-101D8;0.808959!10096-102C6;0.134103!10168-103B6;0.368948!10154-103A1;0.877494!10209-103G2;0.992433!10061-101H7;0.17509!10027-101D9;0.310705!10043-101F7;0.0179939!10783-110G9;0.525723!10028-101E1;0.550305!10060-101H6;0.669733!10203-103F5;0.569841!10059-101H5;0.131866!10047-101G2;0.0450102!10029-101E2;0.549158!10058-101H4;0.0618697!10418-106C4;0.055235!10492-107B6;0.0795806!10694-109G1;0.299509!10797-110I5;0.0100108!10057-101H3;0.422766!10100-102D1;0.0387312!10055-101H1;0.52881!10204-103F6;0.183986!10191-103E2;0.052241!10563-108A5;0.356463
|name=12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28
|name=12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28
|tomtom_result=TBP#MA0108.2;2;1.73581e-06;0.000826246;0.000826246;10;CGCCCTTTAA;CCCCGCCTTTTATAC;-!TBP#MA0108.2;2;1.73581e-06;0.000826246;0.000826246;10;CGCCCTTTAA;CCCCGCCTTTTATAC;-!SMP1#MA0383.1;0;0.0025945;1.23498;0.823322;10;CGCCCTTTAA;TGCTAATTTAATTATAGGTAA;-!NHP6B#MA0346.1;0;0.00601063;2.86106;1;10;CGCCCTTTAA;TCATATTATATATAAATAAA;-!GIS1#MA0306.1;-1;0.00997195;4.74665;1;9;CGCCCTTTAA;ACCCCTAAA;+!AG#MA0005.1;-1;0.0125821;5.98907;1;9;CGCCCTTTAA;ACCAAATTTGG;-!MCM1#MA0331.1;-2;0.0126441;6.01858;1;8;CGCCCTTTAA;CCCAATTAGGAA;+!HAP4#MA0315.1;0;0.0131712;6.26948;1;10;CGCCCTTTAA;TCGCCTCTGATTGGT;-!YER130C#MA0423.1;0;0.0155571;7.40519;1;9;CGCCCTTTAA;ACCCCTATT;+!Klf4#MA0039.1;1;0.0178658;8.50412;1;9;CGCCCTTTAA;CCTTCCTTTA;-!YAP6#MA0418.1;-2;0.0196788;9.36709;1;8;CGCCCTTTAA;GTCGCTTACGTAATCAGACC;-
}}
}}

Latest revision as of 13:33, 7 September 2012

Full Name: 12-CSCCYTTTWA,CNhs11049,BestGuess:GTF2A1,2.p2.SwissRegulon.nucfreq(0.675210679139049),T:631.0(25.69%),B:7523.0(16.72%),P:1e-28

Motif matrix
POACGT
143.539306.666187.40793.388
221.454248.614275.74785.185
322.716356.515232.83918.93
48.834397.5327.133197.503
511.989307.92816.406294.677
621.454148.285180.466281.426
768.779125.5697.572429.08
8214.5429.02610.096377.338
9282.68829.02642.908276.378
10435.3940.384128.72426.502

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
TBP#MA0108.221.73581e-060.0008262460.00082624610CGCCCTTTAACCCCGCCTTTTATAC-
TBP#MA0108.221.73581e-060.0008262460.00082624610CGCCCTTTAACCCCGCCTTTTATAC-
SMP1#MA0383.100.00259451.234980.82332210CGCCCTTTAATGCTAATTTAATTATAGGTAA-
NHP6B#MA0346.100.006010632.86106110CGCCCTTTAATCATATTATATATAAATAAA-
GIS1#MA0306.1-10.009971954.7466519CGCCCTTTAAACCCCTAAA+
AG#MA0005.1-10.01258215.9890719CGCCCTTTAAACCAAATTTGG-
MCM1#MA0331.1-20.01264416.0185818CGCCCTTTAACCCAATTAGGAA+
HAP4#MA0315.100.01317126.26948110CGCCCTTTAATCGCCTCTGATTGGT-
YER130C#MA0423.100.01555717.4051919CGCCCTTTAAACCCCTATT+
Klf4#MA0039.110.01786588.5041219CGCCCTTTAACCTTCCTTTA-
YAP6#MA0418.1-20.01967889.3670918CGCCCTTTAAGTCGCTTACGTAATCAGACC-
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