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MacroAPE 1083:NR2C2 Hela-TR4-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;196;81;356;38!2;441;5;216;9!3;46;1;611;13!4;16;3;584;68!5;10;39;71;551!6;13;546;75;37!7;653;1;14;3!8;380;10;268;13!9;603;1;66;1!10;15;1;650;...")
 
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2-129A4;0.190873!12183-129A5;0.18992!12184-129A6;0.252321!10809-111A8;0.54961!10597-108E3;0.429199!10717-109I6;0.948942!10455-106G5;0.638209!10534-107G3;0.00722675!10429-106D6;0.0137397!10464-106H5;0.38899!10827-111C8;0.0408488!10789-110H6;5.91452e-05!10828-111C9;0.0042887!10788-110H5;0.13557!10792-110H9;0.00323259!10765-110E9;0.023837!10829-111D1;0.00642788!10830-111D2;0.000156243!10831-111D3;0.117849!10832-111D4;0.0349245!10833-111D5;0.00373428!10764-110E8;0.000614482!10770-110F5;0.000387752!10399-106A3;4.3879e-05!10400-106A4;0.00224789!10405-106A9;0.0021811!10834-111D6;0.00108612!10835-111D7;3.98017e-05!10836-111D8;0.00138179!10837-111D9;0.00591787!10699-109G6;0.0185291!10802-111A1;0.0745405!10796-110I4;0.0215938!10010-101C1;0.000265315!10810-111A9;0.0906616!10421-106C7;0.430832!10708-109H6;0.17138!12235-129G3;0.623609!12236-129G4;0.805846!12237-129G5;0.125622!10167-103B5;0.404794!10151-102I7;0.00165086!10428-106D5;0.000407824!10795-110I3;1.5116e-05!10805-111A4;0.0765982!10052-101G7;0.921632!10189-103D9;0.0231878!10589-108D4;0.201791!10425-106D2;2.19572e-05!10427-106D4;0.00110146!10702-109G9;0.316166!10432-106D9;0.00971281!10496-107C1;0.374476!10718-109I7;0.00204906!10011-101C2;0.000492707!10053-101G8;0.0309717!10686-109F2;0.639248!10084-102B3;0.031635!10012-101C3;0.227196!10085-102B4;0.000690553!10482-107A5;0.00400934!10419-106C5;0.620203!10080-102A8;0.255414!10760-110E4;0.516879!10709-109H7;0.165781!10710-109H8;0.0780022!10703-109H1;0.000355526!10719-109I8;0.988605!10642-109A3;0.547752!10177-103C6;0.00139724!10164-103B2;0.0705658!10173-103C2;0.0117008!10166-103B4;0.0135925!10083-102B2;0.000608144!10188-103D8;0.00567055!10552-107I3;0.000846815!10553-107I4;0.0200313!10013-101C4;0.612239!10536-107G5;0.0018037!10618-108G6;0.0115262!10423-106C9;0.0201624!10785-110H2;0.0228438!12238-129G6;0.0115975!12239-129G7;0.257034!12240-129G8;0.00449594!10416-106C2;0.15341!10801-110I9;0.000247639!10766-110F1;0.000305488!10824-111C5;0.00441744!10825-111C6;0.00372843!10826-111C7;0.00280748!10454-106G4;0.00495028!10409-106B4;0.000772132!10638-108I8;0.00615752!10636-108I6;0.113205!10513-107D9;0.234036!10420-106C6;1.66571e-09!10082-102B1;0.265805!10014-101C5;0.00872812!10070-101I7;4.90632e-06!10452-106G2;0.169662!10453-106G3;0.743403!10449-106F8;0.254121!10042-101F6;0.189808!10069-101I6;0.0180209!10193-103E4;0.0136433!10631-108I1;0.0740072!10438-106E6;0.0320392!10488-107B2;0.275061!10196-103E7;0.00416952!10071-101I8;0.739592!10071-101I8;0.0227433!10041-101F5;2.02559e-05!10451-106G1;0.0537852!10450-106F9;0.645278!10604-108F1;0.562623!10605-108F2;0.896693!10606-108F3;0.941869!10603-108E9;0.512466!10497-107C2;0.182505!10448-106F7;0.230547!10643-109A4;0.409031!10426-106D3;0.00962355!10431-106D8;0.833225!10197-103E8;0.49108!10443-106F2;0.257397!10815-111B5;0.468575!10816-111B6;0.0173636!10817-111B7;0.080953!10015-101C6;0.0198366!10410-106B5;0.636573!10054-101G9;0.355655!10758-110E2;0.30147!10711-109H9;0.13809!10040-101F4;0.638213!10470-106I2;0.000165056!10415-106C1;0.0229322!10198-103E9;0.99998!10614-108G2;0.160702!10612-108F9;0.894385!10549-107H9;0.000982101!10615-108G3;0.422857!10487-107B1;0.00866855!10433-106E1;0.0024944!10688-109F4;0.464265!10444-106F3;0.136353!10444-106F3;0.00203269!10485-107A8;0.00126829!10413-106B8;0.03149!10175-103C4;0.00437681!10161-103A8;0.26192!12131-128D7;0.0596116!10624-108H3;0.736289!10712-109I1;0.0155079!10205-103F7;0.159265!10206-103F8;0.719979!10207-103F9;0.285599!10050-101G5;0.637533!10051-101G6;0.000146073!10016-101C7;0.000231836!10046-101G1;0.0165692!10778-110G4;0.604755!10633-108I3;0.00412868!10818-111B8;2.07509e-08!10819-111B9;1.44638e-14!10820-111C1;1.77012e-14!10484-107A7;1.19983e-15!10808-111A7;0.000261124!10169-103B7;0.0425037!10153-102I9;0.00162832!13425-144D5;0.00139021!13433-144E4;0.526717!13437-144E8;0.186913!11904-125F5;0.585393!11905-125F6;0.366047!10039-101F3;0.188502!10791-110H8;0.000255253!10017-101C8;0.187464!10045-101F9;3.82229e-07!10509-107D5;0.147407!10839-111E2;0.174827!10692-109F8;0.000411166!10079-102A7;0.00024449!10078-102A6;0.00907438!10721-110A1;0.00047645!10569-108B2;0.181001!10570-108B3;0.493671!10571-108B4;0.741049!10647-109A8;0.0749097!10752-110D5;0.00762726!10782-110G8;0.157112!10726-110A6;0.0261781!10018-101C9;0.0191119!10086-102B5;1.6558e-28!10182-103D2;4.00008e-21!10165-103B3;0.0270217!10499-107C4;0.0183028!10408-106B3;0.0183354!10019-101D1;0.00880243!10068-101I5;0.48506!10075-102A3;0.113515!10077-102A5;0.918223!10727-110A7;0.0780966!10775-110G1;0.0517592!10412-106B7;0.201916!12231-129F8;0.399462!12232-129F9;0.141105!12233-129G1;0.0992973!12234-129G2;0.131587!10414-106B9;0.069042!10170-103B8;0.774784!10183-103D3;0.00457013!10150-102I6;0.00351325!10174-103C3;0.000404235!10155-103A2;0.583118!10038-101F2;0.0113366!10838-111E1;0.0136526!10759-110E3;0.455277!10514-107E1;0.0963257!10465-106H6;0.904628!10691-109F7;0.545065!10843-111E6;0.27739!10844-111E7;0.814398!11747-123G1;0.298694!11748-123G2;0.0139013!11749-123G3;0.0078738!11750-123G4;0.154657!11751-123G5;0.00627851!11840-124H4;0.0569385!11752-123G6;0.0391931!11753-123G7;0.0122941!11754-123G8;0.00121285!11755-123G9;0.00279199!11756-123H1;0.00902406!11833-124G6;0.0011879!11760-123H5;0.0383095!11836-124G9;0.00146693!11758-123H3;0.0149135!11835-124G8;0.0266997!11762-123H7;0.00588043!11838-124H2;0.0198823!11757-123H2;0.0013666!11759-123H4;0.049875!11761-123H6;0.000101878!11842-124H6;0.00162784!11837-124H1;3.53608e-05!10568-108B1;0.00555824!13230-141I8;0.623506!13231-141I9;0.0559183!10696-109G3;0.0179398!10493-107B7;0.0131693!10494-107B8;0.56429!10850-111F4;0.49991!10851-111F5;0.690752!10852-111F6;0.547552!10853-111F7;0.79633!10854-111F8;0.0867378!10855-111F9;0.023177!10856-111G1;0.00224299!10847-111F1;0.358602!10846-111E9;0.162648!10848-111F2;0.467664!10845-111E8;0.89579!10857-111G2;0.0220102!10858-111G3;0.133623!10156-103A3;0.374992!11901-125F2;0.000560004!11902-125F3;0.961916!11903-125F4;0.629687!10689-109F5;0.468554!10648-109A9;0.238783!10784-110H1;0.0785088!10744-110C6;0.9565!10772-110F7;0.194006!10474-106I6;0.0113814!10600-108E6;0.00298603!10684-109E9;0.229715!12226-129F3;0.00164455!12227-129F4;0.602818!10508-107D4;0.166788!10539-107G8;0.277501!10607-108F4;0.633716!10555-107I6;0.82168!10774-110F9;0.0603882!10637-108I7;0.895638!10663-109C6;5.34284e-06!10728-110A8;0.062856!10729-110A9;4.09157e-05!10430-106D7;0.0163316!10730-110B1;0.449812!10813-111B3;0.771364!10812-111B2;0.00231343!10037-101F1;0.221329!10172-103C1;0.000304922!10163-103B1;0.0109257!10076-102A4;0.000215504!10073-102A1;0.000622394!10036-101E9;0.000944377!10195-103E6;0.000937521!10277-104E7;0.000912327!10434-106E2;0.103846!10550-107I1;0.875792!10545-107H5;0.26961!10544-107H4;0.467754!10704-109H2;0.983618!10510-107D6;0.146953!10558-107I9;0.00229782!10020-101D2;0.00272162!10732-110B3;0.290834!10049-101G4;0.0036346!10698-109G5;4.77875e-05!10437-106E5;0.0257202!10417-106C3;0.879531!10035-101E8;0.352309!10171-103B9;0.000124231!10157-103A4;0.00739441!10034-101E7;0.000510194!10072-101I9;0.000343127!10199-103F1;0.000305456!10200-103F2;0.282302!10697-109G4;0.202613!10723-110A3;0.0276646!10179-103C8;0.218779!10160-103A7;0.124201!10180-103C9;0.0498301!10162-103A9;0.213338!10021-101D3;0.0454584!10840-111E3;0.984396!10706-109H4;0.0885823!10033-101E6;0.187505!10032-101E5;0.00188026!10490-107B4;0.00149215!10439-106E7;0.19246!10022-101D4;0.49109!10176-103C5;0.0325978!10469-106I1;0.00402484!10067-101I4;0.208146!10411-106B6;0.14041!10471-106I3;0.101919!10030-101E3;0.912594!10475-106I7;0.113254!10787-110H4;0.956725!10477-106I9;0.116929!10695-109G2;0.419692!11771-123I7;0.0020649!11772-123I8;0.0740755!11773-123I9;0.238945!10093-102C3;0.00335579!10442-106F1;0.955645!10442-106F1;0.47312!10201-103F3;0.24055!10639-108I9;0.659342!11843-124H7;0.899979!11841-124H5;0.166446!10693-109F9;0.763296!10436-106E4;0.0182395!10483-107A6;0.000530286!10282-104F3;1.16416e-05!10023-101D5;7.08052e-06!10066-101I3;0.00514751!10065-101I2;0.0178471!10800-110I8;0.819258!10610-108F7;0.281163!10841-111E4;0.36307!10541-107H1;0.817552!10842-111E5;0.585322!10562-108A4;0.600106!10024-101D6;0.268731!10064-101I1;4.90549e-10!10609-108F6;0.000593826!10048-101G3;0.172114!10781-110G7;0.00209971!10181-103D1;0.685321!10159-103A6;0.0960672!10056-101H2;0.0161157!10737-110B8;0.0161665!10025-101D7;0.0161025!10044-101F8;0.131922!10424-106D1;0.40905!10463-106H4;0.127583!10616-108G4;0.64396!10486-107A9;0.37553!10062-101H8;0.172865!10202-103F4;0.103811!10158-103A5;0.281593!10441-106E9;0.24973!10031-101E4;0.809106!10063-101H9;0.00188612!10063-101H9;1.83675e-05!11763-123H8;0.0255015!11765-123I1;0.00939061!11768-123I4;0.1181!10807-111A6;0.152692!10790-110H7;0.959551!10798-110I6;0.498155!10786-110H3;0.119703!10591-108D6;0.932601!10593-108D8;0.486286!10590-108D5;0.643233!10026-101D8;0.0271155!10096-102C6;0.846022!10168-103B6;0.168215!10154-103A1;0.104067!10209-103G2;0.0256517!10061-101H7;0.0205373!10027-101D9;0.42222!10043-101F7;0.982956!10783-110G9;0.496901!10028-101E1;0.370795!10060-101H6;0.719478!10203-103F5;0.715012!10059-101H5;0.0120667!10047-101G2;0.0259207!10029-101E2;0.237569!10058-101H4;0.875562!10418-106C4;0.969023!10492-107B6;0.0212948!10694-109G1;0.218107!10797-110I5;1.25974e-05!10057-101H3;0.100077!10100-102D1;0.756906!10055-101H1;0.0026166!10204-103F6;0.00181823!10191-103E2;0.0825121!10563-108A5;0.0971863
|name=NR2C2_Hela-TR4-ChIP-Seq/Homer
|name=NR2C2_Hela-TR4-ChIP-Seq/Homer
|tomtom_result=PPARG::RXRA#MA0065.2;3;7.58048e-11;3.60831e-08;7.18431e-08;14;GAGGTCAAAGGTCA;CTAGGGGTCAAAGGTCATCG;+!NR1H2::RXRA#MA0115.1;1;9.44661e-10;4.49659e-07;4.47646e-07;14;GAGGTCAAAGGTCA;AAAGGTCAAAGGTCAAC;+!NR2F1#MA0017.1;0;2.88299e-08;1.3723e-05;9.10775e-06;14;GAGGTCAAAGGTCA;AGGTTCAAAGGTCA;-!HNF4A#MA0114.1;-1;4.68541e-08;2.23025e-05;1.11014e-05;13;GAGGTCAAAGGTCA;AGGCCAAAGGTCA;+!PPARG::RXRA#MA0065.2;1;7.36e-08;3.50336e-05;1.39507e-05;14;GAGGTCAAAGGTCA;GTAGGGCAAAGGTCA;+!Esrrb#MA0141.1;-2;0.000244072;0.116178;0.0385528;12;GAGGTCAAAGGTCA;AGCTCAAGGTCA;+!NR4A2#MA0160.1;-7;0.000771434;0.367203;0.104445;7;GAGGTCAAAGGTCA;AAGGTCAC;+!INSM1#MA0155.1;-2;0.00293856;1.39875;0.348123;12;GAGGTCAAAGGTCA;TGTCAGGGGGCG;+!RORA_1#MA0071.1;-4;0.00354615;1.68797;0.373425;10;GAGGTCAAAGGTCA;ATCAAGGTCA;+!pan#MA0237.1;-2;0.00798062;3.79877;0.756354;8;GAGGTCAAAGGTCA;GATCAAAG;-!USV1#MA0413.1;3;0.011543;5.49446;0.942076;14;GAGGTCAAAGGTCA;CACAAATTCAGGGGGAATTT;-!ZAP1#MA0440.1;-1;0.0120596;5.74035;0.942076;13;GAGGTCAAAGGTCA;ACCTTAAAGGTCATG;+!ESR1#MA0112.2;-3;0.0129223;6.15103;0.942076;11;GAGGTCAAAGGTCA;GGCCCAGGTCACCCTGACCT;+!exd#MA0222.1;-2;0.0152013;7.23582;0.995524;8;GAGGTCAAAGGTCA;TGTCAAAA;-!tll#MA0459.1;-6;0.0173398;8.25372;0.995524;8;GAGGTCAAAGGTCA;AAAAGTCAAA;+!usp#MA0016.1;0;0.0180625;8.59776;0.995524;10;GAGGTCAAAGGTCA;GGGGTCACGG;+
}}
}}

Latest revision as of 13:31, 7 September 2012

Full Name: NR2C2_Hela-TR4-ChIP-Seq/Homer

Motif matrix
POACGT
11968135638
244152169
346161113
416358468
5103971551
6135467537
76531143
83801026813
96031661
101516505
119557582
1213288550
13195495449
1460794114

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PPARG::RXRA#MA0065.237.58048e-113.60831e-087.18431e-0814GAGGTCAAAGGTCACTAGGGGTCAAAGGTCATCG+
NR1H2::RXRA#MA0115.119.44661e-104.49659e-074.47646e-0714GAGGTCAAAGGTCAAAAGGTCAAAGGTCAAC+
NR2F1#MA0017.102.88299e-081.3723e-059.10775e-0614GAGGTCAAAGGTCAAGGTTCAAAGGTCA-
HNF4A#MA0114.1-14.68541e-082.23025e-051.11014e-0513GAGGTCAAAGGTCAAGGCCAAAGGTCA+
PPARG::RXRA#MA0065.217.36e-083.50336e-051.39507e-0514GAGGTCAAAGGTCAGTAGGGCAAAGGTCA+
Esrrb#MA0141.1-20.0002440720.1161780.038552812GAGGTCAAAGGTCAAGCTCAAGGTCA+
NR4A2#MA0160.1-70.0007714340.3672030.1044457GAGGTCAAAGGTCAAAGGTCAC+
INSM1#MA0155.1-20.002938561.398750.34812312GAGGTCAAAGGTCATGTCAGGGGGCG+
RORA_1#MA0071.1-40.003546151.687970.37342510GAGGTCAAAGGTCAATCAAGGTCA+
pan#MA0237.1-20.007980623.798770.7563548GAGGTCAAAGGTCAGATCAAAG-
USV1#MA0413.130.0115435.494460.94207614GAGGTCAAAGGTCACACAAATTCAGGGGGAATTT-
ZAP1#MA0440.1-10.01205965.740350.94207613GAGGTCAAAGGTCAACCTTAAAGGTCATG+
ESR1#MA0112.2-30.01292236.151030.94207611GAGGTCAAAGGTCAGGCCCAGGTCACCCTGACCT+
exd#MA0222.1-20.01520137.235820.9955248GAGGTCAAAGGTCATGTCAAAA-
tll#MA0459.1-60.01733988.253720.9955248GAGGTCAAAGGTCAAAAAGTCAAA+
usp#MA0016.100.01806258.597760.99552410GAGGTCAAAGGTCAGGGGTCACGG+
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:NR2C2_Hela-TR4-ChIP-Seq/Homer&oldid=2134033"