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MacroAPE 1083:Motif CTGGNG: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;56;0;0!02;0;0;0;56!03;0;0;56;0!04;0;0;56;0!05;56;0;0;0!06;0;0;56;0 |macroape_1083_sample_pvalues=11376-118A8;0.231899!11327-117E4;0.1945...")
 
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1C8;0.23348!10789-110H6;0.192815!10828-111C9;0.163884!10788-110H5;0.112395!10792-110H9;0.253466!10765-110E9;0.119364!10829-111D1;0.236769!10830-111D2;0.212715!10831-111D3;0.115747!10832-111D4;0.130273!10833-111D5;0.185162!10764-110E8;0.204272!10770-110F5;0.0486543!10399-106A3;0.287702!10400-106A4;0.147617!10405-106A9;0.161443!10834-111D6;0.130488!10835-111D7;0.116396!10836-111D8;0.227088!10837-111D9;0.177559!10699-109G6;0.129887!10802-111A1;0.398221!10796-110I4;0.214878!10010-101C1;0.183239!10810-111A9;0.240251!10421-106C7;0.235515!10708-109H6;0.157914!12235-129G3;0.159361!12236-129G4;0.781513!12237-129G5;0.991502!10167-103B5;0.98384!10151-102I7;0.0633814!10428-106D5;0.09625!10795-110I3;0.837809!10805-111A4;0.234524!10052-101G7;0.196015!10189-103D9;0.322264!10589-108D4;0.557195!10425-106D2;0.380132!10427-106D4;0.686336!10702-109G9;0.252452!10432-106D9;0.0843469!10496-107C1;0.191732!10718-109I7;0.182096!10011-101C2;0.174849!10053-101G8;0.259968!10686-109F2;0.0256349!10084-102B3;0.496917!10012-101C3;0.0995201!10085-102B4;0.119757!10482-107A5;0.120149!10419-106C5;0.203028!10080-102A8;0.20847!10760-110E4;0.460942!10709-109H7;0.227913!10710-109H8;0.288827!10703-109H1;0.186825!10719-109I8;0.293027!10642-109A3;0.357874!10177-103C6;0.68178!10164-103B2;0.0716367!10173-103C2;0.0748822!10166-103B4;0.245495!10083-102B2;0.175353!10188-103D8;0.159459!10552-107I3;0.131933!10553-107I4;0.329961!10013-101C4;0.406499!10536-107G5;0.251976!10618-108G6;0.328867!10423-106C9;0.0959383!10785-110H2;0.0772628!12238-129G6;0.131578!12239-129G7;0.821108!12240-129G8;0.521284!10416-106C2;0.823496!10801-110I9;0.149661!10766-110F1;0.160878!10824-111C5;0.185568!10825-111C6;0.27984!10826-111C7;0.243474!10454-106G4;0.27006!10409-106B4;0.267835!10638-108I8;0.173176!10636-108I6;0.101204!10513-107D9;0.0953722!10420-106C6;0.177025!10082-102B1;0.332651!10014-101C5;0.726414!10070-101I7;0.450521!10452-106G2;0.468436!10453-106G3;0.291914!10449-106F8;0.276016!10042-101F6;0.289256!10069-101I6;0.1357!10193-103E4;0.128576!10631-108I1;0.0740033!10438-106E6;0.165134!10488-107B2;0.35635!10196-103E7;0.267026!10071-101I8;0.370189!10071-101I8;0.32162!10041-101F5;0.141665!10451-106G1;0.264734!10450-106F9;0.182275!10604-108F1;0.168012!10605-108F2;0.096032!10606-108F3;0.146366!10603-108E9;0.256796!10497-107C2;0.141366!10448-106F7;0.0923132!10643-109A4;0.391057!10426-106D3;0.123519!10431-106D8;0.134535!10197-103E8;0.13574!10443-106F2;0.294037!10815-111B5;0.156241!10816-111B6;0.27013!10817-111B7;0.272197!10015-101C6;0.246847!10410-106B5;0.375294!10054-101G9;0.184518!10758-110E2;0.228029!10711-109H9;0.17134!10040-101F4;0.292055!10470-106I2;0.0829363!10415-106C1;0.215919!10198-103E9;0.30698!10614-108G2;0.334753!10612-108F9;0.187713!10549-107H9;0.159343!10615-108G3;0.231962!10487-107B1;0.345514!10433-106E1;0.145551!10688-109F4;0.124332!10444-106F3;0.35935!10444-106F3;0.579701!10485-107A8;0.637095!10413-106B8;0.578726!10175-103C4;0.518114!10161-103A8;0.0807717!12131-128D7;0.14006!10624-108H3;0.146025!10712-109I1;0.44639!10205-103F7;0.111127!10206-103F8;0.144206!10207-103F9;0.125587!10050-101G5;0.114904!10051-101G6;0.492284!10016-101C7;0.225719!10046-101G1;0.28066!10778-110G4;0.181233!10633-108I3;0.0936947!10818-111B8;0.243602!10819-111B9;0.183391!10820-111C1;0.200855!10484-107A7;0.19808!10808-111A7;0.153418!10169-103B7;0.385871!10153-102I9;0.0629921!13425-144D5;0.107532!13433-144E4;0.213726!13437-144E8;0.178154!11904-125F5;0.208397!11905-125F6;0.442894!10039-101F3;0.215059!10791-110H8;0.0947023!10017-101C8;0.228441!10045-101F9;0.831587!10509-107D5;0.616489!10839-111E2;0.328086!10692-109F8;0.221284!10079-102A7;0.100121!10078-102A6;0.199341!10721-110A1;0.234792!10569-108B2;0.177263!10570-108B3;0.00471352!10571-108B4;0.0299436!10647-109A8;0.00958103!10752-110D5;0.413235!10782-110G8;0.059563!10726-110A6;0.273732!10018-101C9;0.339117!10086-102B5;0.663607!10182-103D2;0.882777!10165-103B3;0.14367!10499-107C4;0.129188!10408-106B3;0.126191!10019-101D1;0.368121!10068-101I5;0.534557!10075-102A3;0.340778!10077-102A5;0.688817!10727-110A7;0.707567!10775-110G1;0.359681!10412-106B7;0.181662!12231-129F8;0.415468!12232-129F9;0.176829!12233-129G1;0.197715!12234-129G2;0.141715!10414-106B9;0.23987!10170-103B8;0.386586!10183-103D3;0.0858343!10150-102I6;0.0645928!10174-103C3;0.0987974!10155-103A2;0.258792!10038-101F2;0.179136!10838-111E1;0.177945!10759-110E3;0.478337!10514-107E1;0.0459463!10465-106H6;0.801739!10691-109F7;0.967842!10843-111E6;0.540889!10844-111E7;0.216842!11747-123G1;0.257668!11748-123G2;0.244563!11749-123G3;0.122761!11750-123G4;0.0870558!11751-123G5;0.032322!11840-124H4;0.0297395!11752-123G6;0.0320624!11753-123G7;0.0287958!11754-123G8;0.0311871!11755-123G9;0.0675871!11756-123H1;0.0563551!11833-124G6;0.0814649!11760-123H5;0.133567!11836-124G9;0.204122!11758-123H3;0.045011!11835-124G8;0.0859228!11762-123H7;0.225475!11838-124H2;0.11232!11757-123H2;0.0879493!11759-123H4;0.0829373!11761-123H6;0.0886703!11842-124H6;0.185524!11837-124H1;0.0510055!10568-108B1;0.111645!13230-141I8;0.819137!13231-141I9;0.0891882!10696-109G3;0.0815202!10493-107B7;0.285382!10494-107B8;0.209849!10850-111F4;0.0751853!10851-111F5;0.0811492!10852-111F6;0.794861!10853-111F7;0.972066!10854-111F8;0.222841!10855-111F9;0.435441!10856-111G1;0.362086!10847-111F1;0.283476!10846-111E9;0.408501!10848-111F2;0.488997!10845-111E8;0.180409!10857-111G2;0.187123!10858-111G3;0.0704311!10156-103A3;0.233456!11901-125F2;0.0961352!11902-125F3;0.645028!11903-125F4;0.347196!10689-109F5;0.392791!10648-109A9;0.551961!10784-110H1;0.180129!10744-110C6;0.119089!10772-110F7;0.329844!10474-106I6;0.127303!10600-108E6;0.265494!10684-109E9;0.483242!12226-129F3;0.397238!12227-129F4;0.31937!10508-107D4;0.661288!10539-107G8;0.389338!10607-108F4;0.54069!10555-107I6;0.51642!10774-110F9;0.466687!10637-108I7;0.358374!10663-109C6;0.567275!10728-110A8;0.391935!10729-110A9;0.350498!10430-106D7;0.141299!10730-110B1;0.222086!10813-111B3;0.426591!10812-111B2;0.0484103!10037-101F1;0.322759!10172-103C1;0.0938115!10163-103B1;0.0638863!10076-102A4;0.119231!10073-102A1;0.106743!10036-101E9;0.180008!10195-103E6;0.126626!10277-104E7;0.0825487!10434-106E2;0.134633!10550-107I1;0.153817!10545-107H5;0.120824!10544-107H4;0.432642!10704-109H2;0.290683!10510-107D6;0.0882968!10558-107I9;0.165889!10020-101D2;0.714511!10732-110B3;0.217199!10049-101G4;0.526136!10698-109G5;0.951219!10437-106E5;0.0833853!10417-106C3;0.667898!10035-101E8;0.312255!10171-103B9;0.0937823!10157-103A4;0.055206!10034-101E7;0.0969359!10072-101I9;0.0958609!10199-103F1;0.176606!10200-103F2;0.572455!10697-109G4;0.213309!10723-110A3;0.967023!10179-103C8;0.529384!10160-103A7;0.100946!10180-103C9;0.13622!10162-103A9;0.587376!10021-101D3;0.43165!10840-111E3;0.558724!10706-109H4;0.274794!10033-101E6;0.479475!10032-101E5;0.11849!10490-107B4;0.102386!10439-106E7;0.0956488!10022-101D4;0.0801892!10176-103C5;0.304675!10469-106I1;0.0440697!10067-101I4;0.237798!10411-106B6;0.289186!10471-106I3;0.317216!10030-101E3;0.379875!10475-106I7;0.320104!10787-110H4;0.3119!10477-106I9;0.205812!10695-109G2;0.635921!11771-123I7;0.100748!11772-123I8;0.410673!11773-123I9;0.586259!10093-102C3;0.534176!10442-106F1;0.544198!10442-106F1;0.496823!10201-103F3;0.525574!10639-108I9;0.315432!11843-124H7;0.6723!11841-124H5;0.0337434!10693-109F9;0.0759326!10436-106E4;0.0778129!10483-107A6;0.152334!10282-104F3;0.27006!10023-101D5;0.280101!10066-101I3;0.212769!10065-101I2;0.168812!10800-110I8;0.180433!10610-108F7;0.181156!10841-111E4;0.100996!10541-107H1;0.37928!10842-111E5;0.206169!10562-108A4;0.393945!10024-101D6;0.440099!10064-101I1;0.512611!10609-108F6;0.471816!10048-101G3;0.340859!10781-110G7;0.13668!10181-103D1;0.589646!10159-103A6;0.140881!10056-101H2;0.147959!10737-110B8;0.165452!10025-101D7;0.076586!10044-101F8;0.851604!10424-106D1;0.597183!10463-106H4;0.307571!10616-108G4;0.28521!10486-107A9;0.232852!10062-101H8;0.188861!10202-103F4;0.528079!10158-103A5;0.478836!10441-106E9;0.140854!10031-101E4;0.376497!10063-101H9;0.114857!10063-101H9;0.171984!11763-123H8;0.242383!11765-123I1;0.0192464!11768-123I4;0.0479629!10807-111A6;0.0484762!10790-110H7;0.289044!10798-110I6;0.337947!10786-110H3;0.349902!10591-108D6;0.350771!10593-108D8;0.275207!10590-108D5;0.364658!10026-101D8;0.255969!10096-102C6;0.575179!10168-103B6;0.273474!10154-103A1;0.110167!10209-103G2;0.121294!10061-101H7;0.347501!10027-101D9;0.1848!10043-101F7;0.30692!10783-110G9;0.77534!10028-101E1;0.855024!10060-101H6;0.368642!10203-103F5;0.147517!10059-101H5;0.327094!10047-101G2;0.247881!10029-101E2;0.745836!10058-101H4;0.47188!10418-106C4;0.180336!10492-107B6;0.25295!10694-109G1;0.432127!10797-110I5;0.0752228!10057-101H3;0.216597!10100-102D1;0.227867!10055-101H1;0.190986!10204-103F6;0.279433!10191-103E2;0.346081!10563-108A5;0.261235
|name=motif_CTGGNG
|name=motif_CTGGNG
|tomtom_result=ZNF354C#MA0130.1;0;0.00811382;3.86218;1;6;CTGGAG;GTGGAT;-!ABF2#MA0266.1;1;0.0102183;4.86391;1;6;CTGGAG;TCTAGAG;-!tin#MA0247.1;2;0.0112946;5.37625;1;6;CTGGAG;CACTTGAG;-!EBF1#MA0154.1;3;0.0121975;5.806;1;6;CTGGAG;TCCCTTGGGT;-!SIP4#MA0380.1;1;0.0125936;5.99455;1;6;CTGGAG;TCCGGAG;-!CAT8#MA0280.1;0;0.0129833;6.18005;1;6;CTGGAG;CCGGAA;+!YLR278C#MA0430.1;0;0.0135397;6.44489;1;6;CTGGAG;CCGGAGTT;+!ECM22#MA0292.1;1;0.0144033;6.85598;1;6;CTGGAG;TCCGGAG;-!XBP1#MA0414.1;0;0.0153923;7.32673;1;6;CTGGAG;CTCGAGA;+!Stat3#MA0144.1;4;0.016755;7.97539;1;6;CTGGAG;CTTCCTGGAA;-!Myf#MA0055.1;6;0.0182616;8.69251;1;6;CTGGAG;CAGCAGCTGCTG;+
}}
}}

Latest revision as of 13:21, 7 September 2012

Full Name: motif_CTGGNG

Motif matrix
POACGT
0105600
0200056
0300560
0400560
0556000
0600560

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ZNF354C#MA0130.100.008113823.8621816CTGGAGGTGGAT-
ABF2#MA0266.110.01021834.8639116CTGGAGTCTAGAG-
tin#MA0247.120.01129465.3762516CTGGAGCACTTGAG-
EBF1#MA0154.130.01219755.80616CTGGAGTCCCTTGGGT-
SIP4#MA0380.110.01259365.9945516CTGGAGTCCGGAG-
CAT8#MA0280.100.01298336.1800516CTGGAGCCGGAA+
YLR278C#MA0430.100.01353976.4448916CTGGAGCCGGAGTT+
ECM22#MA0292.110.01440336.8559816CTGGAGTCCGGAG-
XBP1#MA0414.100.01539237.3267316CTGGAGCTCGAGA+
Stat3#MA0144.140.0167557.9753916CTGGAGCTTCCTGGAA-
Myf#MA0055.160.01826168.6925116CTGGAGCAGCAGCTGCTG+
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