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MacroAPE 1083:CNhs10643 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;415.9242294090719;4638.076860424858;970.6336695865039;582.1146598793019!2;696.1879744358498;1868.9147229278421;2129.1031506883282;1912.54357...")
 
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46!10455-106G5;0.648705!10534-107G3;0.0012379!10429-106D6;0.0030862!10464-106H5;0.00369485!10827-111C8;0.0317271!10789-110H6;0.00416262!10828-111C9;0.000743271!10788-110H5;0.0296673!10792-110H9;0.0019501!10765-110E9;0.000988922!10829-111D1;0.0353563!10830-111D2;0.00333997!10831-111D3;0.0124888!10832-111D4;0.00918137!10833-111D5;0.00616363!10764-110E8;0.000935299!10770-110F5;0.00227135!10399-106A3;0.0128215!10400-106A4;0.00271136!10405-106A9;0.00266003!10834-111D6;0.00504812!10835-111D7;0.0151439!10836-111D8;0.0712028!10837-111D9;0.0178529!10699-109G6;0.00594144!10802-111A1;0.00584926!10796-110I4;0.00192506!10010-101C1;0.798421!10810-111A9;0.000579362!10421-106C7;0.122638!10708-109H6;0.040512!12235-129G3;0.992208!12236-129G4;0.218681!12237-129G5;0.273388!10167-103B5;0.237488!10151-102I7;0.333552!10428-106D5;0.163619!10795-110I3;0.347013!10805-111A4;0.0135309!10052-101G7;0.708507!10189-103D9;0.00381049!10589-108D4;0.138157!10425-106D2;0.122468!10427-106D4;0.726443!10702-109G9;0.000763745!10432-106D9;0.534914!10496-107C1;0.588193!10718-109I7;0.310463!10011-101C2;0.0249969!10053-101G8;0.0063985!10686-109F2;0.262112!10084-102B3;0.350919!10012-101C3;0.145725!10085-102B4;0.157107!10482-107A5;0.403138!10419-106C5;0.919549!10080-102A8;0.63511!10760-110E4;0.00279235!10709-109H7;0.936991!10710-109H8;0.919051!10703-109H1;0.770524!10719-109I8;0.22358!10642-109A3;0.0560599!10177-103C6;0.511371!10164-103B2;0.301741!10173-103C2;0.327785!10166-103B4;0.565351!10083-102B2;0.290383!10188-103D8;0.319415!10552-107I3;0.118725!10553-107I4;0.0777795!10013-101C4;0.644047!10536-107G5;0.00297885!10618-108G6;0.682947!10423-106C9;0.865193!10785-110H2;0.533867!12238-129G6;0.126899!12239-129G7;0.0836328!12240-129G8;0.370208!10416-106C2;0.0850041!10801-110I9;0.00349545!10766-110F1;0.000486434!10824-111C5;0.000856485!10825-111C6;0.0452424!10826-111C7;0.0434656!10454-106G4;0.0460031!10409-106B4;0.00619447!10638-108I8;0.000222599!10636-108I6;0.141964!10513-107D9;0.216737!10420-106C6;0.641651!10082-102B1;0.0283102!10014-101C5;0.013859!10070-101I7;0.0090122!10452-106G2;0.030907!10453-106G3;0.0259455!10449-106F8;0.00387305!10042-101F6;0.00323723!10069-101I6;0.0634951!10193-103E4;0.0275645!10631-108I1;0.243887!10438-106E6;0.00112899!10488-107B2;0.961587!10196-103E7;0.879069!10071-101I8;0.0440488!10071-101I8;0.0691223!10041-101F5;0.596202!10451-106G1;0.00127447!10450-106F9;0.00695558!10604-108F1;0.124712!10605-108F2;0.642525!10606-108F3;0.797555!10603-108E9;0.687126!10497-107C2;0.720474!10448-106F7;0.314778!10643-109A4;0.829946!10426-106D3;0.708928!10431-106D8;0.264246!10197-103E8;0.898688!10443-106F2;0.0566008!10815-111B5;0.402813!10816-111B6;0.101901!10817-111B7;0.111342!10015-101C6;0.120312!10410-106B5;0.0005685!10054-101G9;0.603657!10758-110E2;0.0189287!10711-109H9;0.122457!10040-101F4;0.0101977!10470-106I2;0.27002!10415-106C1;0.165505!10198-103E9;0.728472!10614-108G2;0.00278063!10612-108F9;0.445899!10549-107H9;0.516563!10615-108G3;0.128474!10487-107B1;0.235046!10433-106E1;0.122965!10688-109F4;0.739534!10444-106F3;0.45213!10444-106F3;0.163711!10485-107A8;0.127007!10413-106B8;0.835228!10175-103C4;0.0356619!10161-103A8;0.282852!12131-128D7;0.105695!10624-108H3;0.301783!10712-109I1;0.665433!10205-103F7;0.000337143!10206-103F8;0.00353005!10207-103F9;0.0171802!10050-101G5;0.0591854!10051-101G6;0.00964749!10016-101C7;0.00921148!10046-101G1;0.0137804!10778-110G4;0.0259611!10633-108I3;0.770184!10818-111B8;0.475978!10819-111B9;0.122554!10820-111C1;0.126034!10484-107A7;0.13345!10808-111A7;0.465049!10169-103B7;0.000305384!10153-102I9;0.301144!13425-144D5;0.142667!13433-144E4;0.255453!13437-144E8;0.388948!11904-125F5;0.115291!11905-125F6;0.490779!10039-101F3;0.614951!10791-110H8;0.21518!10017-101C8;0.574099!10045-101F9;0.0638783!10509-107D5;0.0288732!10839-111E2;0.354657!10692-109F8;0.256395!10079-102A7;0.70538!10078-102A6;0.0225151!10721-110A1;0.0125445!10569-108B2;0.518402!10570-108B3;0.25716!10571-108B4;0.286812!10647-109A8;0.214531!10752-110D5;0.977549!10782-110G8;0.0249016!10726-110A6;0.15302!10018-101C9;0.56585!10086-102B5;0.0631786!10182-103D2;0.0570896!10165-103B3;0.110311!10499-107C4;0.113498!10408-106B3;0.881072!10019-101D1;0.603741!10068-101I5;0.000926747!10075-102A3;0.0225638!10077-102A5;0.000670075!10727-110A7;0.968722!10775-110G1;0.00425956!10412-106B7;0.000397891!12231-129F8;0.602452!12232-129F9;0.129796!12233-129G1;0.159224!12234-129G2;0.179561!10414-106B9;0.473814!10170-103B8;0.180532!10183-103D3;0.469258!10150-102I6;0.358471!10174-103C3;0.223238!10155-103A2;0.0397583!10038-101F2;0.0262578!10838-111E1;0.0140985!10759-110E3;0.245262!10514-107E1;0.977421!10465-106H6;0.00667812!10691-109F7;0.230471!10843-111E6;0.23804!10844-111E7;0.103676!11747-123G1;0.200758!11748-123G2;0.677696!11749-123G3;0.837917!11750-123G4;0.723154!11751-123G5;0.676206!11840-124H4;0.63579!11752-123G6;0.857677!11753-123G7;0.685719!11754-123G8;0.377907!11755-123G9;0.582087!11756-123H1;0.266333!11833-124G6;0.618718!11760-123H5;0.160985!11836-124G9;0.466104!11758-123H3;0.682225!11835-124G8;0.804254!11762-123H7;0.677228!11838-124H2;0.549676!11757-123H2;0.179527!11759-123H4;0.463182!11761-123H6;0.382593!11842-124H6;0.833481!11837-124H1;0.980884!10568-108B1;0.633406!13230-141I8;0.734225!13231-141I9;0.947294!10696-109G3;0.63171!10493-107B7;0.121443!10494-107B8;0.236505!10850-111F4;0.966698!10851-111F5;0.4193!10852-111F6;0.464115!10853-111F7;0.123073!10854-111F8;0.698738!10855-111F9;0.993657!10856-111G1;0.0737808!10847-111F1;0.306335!10846-111E9;0.103004!10848-111F2;0.472575!10845-111E8;0.463041!10857-111G2;0.460481!10858-111G3;0.473239!10156-103A3;0.791483!11901-125F2;0.220173!11902-125F3;0.480255!11903-125F4;0.754534!10689-109F5;0.280668!10648-109A9;0.124183!10784-110H1;0.3829!10744-110C6;0.58582!10772-110F7;0.00586338!10474-106I6;0.0179159!10600-108E6;0.00103696!10684-109E9;0.439268!12226-129F3;0.0333371!12227-129F4;0.697983!10508-107D4;0.0111354!10539-107G8;0.147918!10607-108F4;0.668722!10555-107I6;0.0224543!10774-110F9;0.180355!10637-108I7;0.00268382!10663-109C6;0.0790933!10728-110A8;0.234684!10729-110A9;0.0472179!10430-106D7;0.360916!10730-110B1;0.0376914!10813-111B3;0.0853264!10812-111B2;0.560076!10037-101F1;0.249411!10172-103C1;0.224313!10163-103B1;0.651754!10076-102A4;0.17136!10073-102A1;0.282584!10036-101E9;0.791069!10195-103E6;0.160804!10277-104E7;0.22963!10434-106E2;0.30385!10550-107I1;0.631067!10545-107H5;0.671234!10544-107H4;0.332717!10704-109H2;0.458728!10510-107D6;0.306328!10558-107I9;0.249561!10020-101D2;0.871689!10732-110B3;0.0118963!10049-101G4;0.23921!10698-109G5;0.895588!10437-106E5;0.805314!10417-106C3;0.715293!10035-101E8;0.50682!10171-103B9;0.240895!10157-103A4;0.447842!10034-101E7;0.229919!10072-101I9;0.202341!10199-103F1;0.847315!10200-103F2;0.118374!10697-109G4;0.00243874!10723-110A3;0.098813!10179-103C8;0.591071!10160-103A7;0.532543!10180-103C9;0.747509!10162-103A9;0.935326!10021-101D3;0.697841!10840-111E3;0.0476643!10706-109H4;0.00241843!10033-101E6;0.197418!10032-101E5;0.102618!10490-107B4;0.202334!10439-106E7;0.960016!10022-101D4;0.947453!10176-103C5;0.00589912!10469-106I1;0.380248!10067-101I4;0.987561!10411-106B6;0.0250105!10471-106I3;0.521315!10030-101E3;0.528623!10475-106I7;0.00646905!10787-110H4;0.153055!10477-106I9;0.163041!10695-109G2;0.222392!11771-123I7;0.0852357!11772-123I8;0.0483775!11773-123I9;0.0224301!10093-102C3;0.0144217!10442-106F1;0.195453!10442-106F1;0.000345562!10201-103F3;0.00111696!10639-108I9;0.0349693!11843-124H7;0.722056!11841-124H5;0.799824!10693-109F9;0.301812!10436-106E4;0.552926!10483-107A6;0.923008!10282-104F3;0.0421903!10023-101D5;0.26897!10066-101I3;0.00587078!10065-101I2;0.0742661!10800-110I8;0.0487134!10610-108F7;0.246505!10841-111E4;0.810275!10541-107H1;0.0796682!10842-111E5;0.0381695!10562-108A4;0.244478!10024-101D6;0.649792!10064-101I1;0.0172466!10609-108F6;0.301664!10048-101G3;0.0703442!10781-110G7;0.00544682!10181-103D1;0.72682!10159-103A6;0.0509535!10056-101H2;0.07325!10737-110B8;0.052488!10025-101D7;0.381414!10044-101F8;0.147889!10424-106D1;0.023514!10463-106H4;0.000315842!10616-108G4;0.492914!10486-107A9;0.555144!10062-101H8;0.0521895!10202-103F4;0.00181574!10158-103A5;0.0528615!10441-106E9;0.0515105!10031-101E4;0.199271!10063-101H9;0.0962185!10063-101H9;0.6743!11763-123H8;0.0598706!11765-123I1;0.426314!11768-123I4;0.0967988!10807-111A6;0.322892!10790-110H7;0.170896!10798-110I6;0.0645279!10786-110H3;0.912421!10591-108D6;0.842222!10593-108D8;0.307208!10590-108D5;0.869829!10026-101D8;0.255437!10096-102C6;0.941544!10168-103B6;0.164905!10154-103A1;0.25496!10209-103G2;0.170637!10061-101H7;0.0159495!10027-101D9;0.0864204!10043-101F7;0.115108!10783-110G9;0.452228!10028-101E1;0.367414!10060-101H6;0.125477!10203-103F5;0.0220836!10059-101H5;0.00277184!10047-101G2;0.0189099!10029-101E2;0.00796314!10058-101H4;0.00411901!10418-106C4;0.00848225!10492-107B6;0.711481!10694-109G1;0.503907!10797-110I5;0.586028!10057-101H3;0.387249!10100-102D1;0.0336778!10055-101H1;0.018444!10204-103F6;0.0417684!10191-103E2;0.0327396!10563-108A5;0.0856893
|name=CNhs10643_bu_f2
|name=CNhs10643_bu_f2
|tomtom_result=Trl#MA0205.1;-1;0.00190118;0.90496;1;10;CGCGCTCTGCCC;TTGCTCTCTC;+!PPARG::RXRA#MA0065.2;0;0.00396045;1.88517;1;12;CGCGCTCTGCCC;TGACCTTTGCCCTAC;-!SP1#MA0079.2;-3;0.00399996;1.90398;1;9;CGCGCTCTGCCC;CCCCGCCCCC;+!Pax4#MA0068.1;18;0.00605692;2.88309;1;12;CGCGCTCTGCCC;GAAAAATTTCCCATACTCCACTCCCCCCCC;+!BAS1#MA0278.1;11;0.00692273;3.29522;1;10;CGCGCTCTGCCC;TTGACTTGACTCTGGCTGTGC;-!GAL4#MA0299.1;1;0.00722825;3.44065;1;12;CGCGCTCTGCCC;GAGTACTGTTCCCCG;-!CHA4#MA0283.1;-3;0.00808123;3.84667;1;8;CGCGCTCTGCCC;TCTCCGCC;-!RXR::RAR_DR5#MA0159.1;4;0.00852912;4.05986;1;12;CGCGCTCTGCCC;TGACCTCTCCGTGACCT;-!HNF4A#MA0114.1;0;0.0110706;5.2696;1;12;CGCGCTCTGCCC;TGACCTTTGGCCT;-!YGR067C#MA0425.1;2;0.0115925;5.51805;1;12;CGCGCTCTGCCC;ACCCCACTTTTTTG;+!Zfx#MA0146.1;1;0.0152827;7.27456;1;12;CGCGCTCTGCCC;GGGGCCGAGGCCTG;+!abi4#MA0123.1;-4;0.0194569;9.26148;1;8;CGCGCTCTGCCC;CGGTGCCCCC;+!IME1#MA0320.1;-4;0.0195898;9.32475;1;8;CGCGCTCTGCCC;CTCGGCGG;-!SUT1#MA0399.1;-4;0.0204243;9.72198;1;7;CGCGCTCTGCCC;CCCCGCG;-
}}
}}

Latest revision as of 12:57, 7 September 2012

Full Name: CNhs10643_bu_f2

Motif matrix
POACGT
1415.92422940907194638.076860424858970.6336695865039582.1146598793019
2696.18797443584981868.91472292784212129.10315068832821912.5435712477174
3398.22162419770773040.2118657673532357.4594923217714810.8564370128994
4223.10344432250651926.30299386600592842.8825542184931614.4604268927335
513.0510271694074836490.42563096033765.6016991127483437.67106205723906
6217.6525892463612303.070636405251104.439207473966263981.586986174162
70.06593.5387026149498.4368662223452324.773850462435108
8213.08619955799718.5175257154217571382.89006121397875002.2556328123355
932.361316380663352102.89661410961934211.0148639682260.4766248412553
1051.274425212081926376.698106889591107.1916716322331471.58521556582002
11658.86067352885552714.44911741401531424.89727526384511808.5423530930186
12283.865638132389344146.708155529661413.617004430465762.5586212072217

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.1-10.001901180.90496110CGCGCTCTGCCCTTGCTCTCTC+
PPARG::RXRA#MA0065.200.003960451.88517112CGCGCTCTGCCCTGACCTTTGCCCTAC-
SP1#MA0079.2-30.003999961.9039819CGCGCTCTGCCCCCCCGCCCCC+
Pax4#MA0068.1180.006056922.88309112CGCGCTCTGCCCGAAAAATTTCCCATACTCCACTCCCCCCCC+
BAS1#MA0278.1110.006922733.29522110CGCGCTCTGCCCTTGACTTGACTCTGGCTGTGC-
GAL4#MA0299.110.007228253.44065112CGCGCTCTGCCCGAGTACTGTTCCCCG-
CHA4#MA0283.1-30.008081233.8466718CGCGCTCTGCCCTCTCCGCC-
RXR::RAR_DR5#MA0159.140.008529124.05986112CGCGCTCTGCCCTGACCTCTCCGTGACCT-
HNF4A#MA0114.100.01107065.2696112CGCGCTCTGCCCTGACCTTTGGCCT-
YGR067C#MA0425.120.01159255.51805112CGCGCTCTGCCCACCCCACTTTTTTG+
Zfx#MA0146.110.01528277.27456112CGCGCTCTGCCCGGGGCCGAGGCCTG+
abi4#MA0123.1-40.01945699.2614818CGCGCTCTGCCCCGGTGCCCCC+
IME1#MA0320.1-40.01958989.3247518CGCGCTCTGCCCCTCGGCGG-
SUT1#MA0399.1-40.02042439.7219817CGCGCTCTGCCCCCCCGCG-
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