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MacroAPE 1083:CNhs12013 bu f2: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;790.6165014907067;217.10478399199732;597.7635152038288;356.54005549770676!2;618.1042488700143;134.24863550575242;1126.6682060705643;83.00376...")
 
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A5;0.0335386!12184-129A6;0.0572446!10809-111A8;0.0372569!10597-108E3;0.0131322!10717-109I6;0.0265212!10455-106G5;1.63889e-05!10534-107G3;0.0533428!10429-106D6;0.000623568!10464-106H5;0.0239666!10827-111C8;0.00180884!10789-110H6;0.474139!10828-111C9;0.495123!10788-110H5;0.140679!10792-110H9;0.0751523!10765-110E9;0.699888!10829-111D1;0.25188!10830-111D2;0.428729!10831-111D3;0.0319677!10832-111D4;0.0919146!10833-111D5;0.276189!10764-110E8;0.22292!10770-110F5;0.0856872!10399-106A3;0.845453!10400-106A4;0.0347109!10405-106A9;0.0598463!10834-111D6;0.0387052!10835-111D7;0.61665!10836-111D8;0.0645265!10837-111D9;0.00202539!10699-109G6;0.136933!10802-111A1;0.0690873!10796-110I4;0.0111956!10010-101C1;0.0127818!10810-111A9;0.000160233!10421-106C7;0.000725255!10708-109H6;0.670772!12235-129G3;0.00184467!12236-129G4;0.355731!12237-129G5;0.175208!10167-103B5;0.554499!10151-102I7;0.616069!10428-106D5;0.603542!10795-110I3;0.0188763!10805-111A4;0.13481!10052-101G7;0.000561428!10189-103D9;0.000837309!10589-108D4;0.00151532!10425-106D2;0.000130709!10427-106D4;0.0221699!10702-109G9;0.341645!10432-106D9;0.139883!10496-107C1;9.33851e-05!10718-109I7;0.00236058!10011-101C2;0.53049!10053-101G8;0.00270816!10686-109F2;0.0839677!10084-102B3;0.130437!10012-101C3;0.277307!10085-102B4;0.281549!10482-107A5;0.655697!10419-106C5;1.27431e-05!10080-102A8;1.54116e-05!10760-110E4;0.0541402!10709-109H7;0.00048734!10710-109H8;0.000412173!10703-109H1;0.0078009!10719-109I8;2.30924e-05!10642-109A3;1.92633e-05!10177-103C6;0.00440869!10164-103B2;0.432142!10173-103C2;0.579847!10166-103B4;0.940953!10083-102B2;0.995374!10188-103D8;0.753888!10552-107I3;0.344079!10553-107I4;0.0143448!10013-101C4;2.66284e-05!10536-107G5;0.00729645!10618-108G6;0.0119396!10423-106C9;0.00239361!10785-110H2;0.0155401!12238-129G6;0.00846578!12239-129G7;0.00101723!12240-129G8;0.0457739!10416-106C2;0.000194685!10801-110I9;0.771082!10766-110F1;0.232609!10824-111C5;0.184122!10825-111C6;0.0226657!10826-111C7;0.0222501!10454-106G4;0.027942!10409-106B4;0.0596397!10638-108I8;0.0588115!10636-108I6;1.14239e-05!10513-107D9;0.0140621!10420-106C6;0.00181156!10082-102B1;0.000214315!10014-101C5;0.0109356!10070-101I7;0.00367837!10452-106G2;0.0078486!10453-106G3;0.00904915!10449-106F8;0.00296584!10042-101F6;0.00306141!10069-101I6;0.0654968!10193-103E4;0.000438786!10631-108I1;0.368953!10438-106E6;0.0759014!10488-107B2;0.00210486!10196-103E7;0.0279002!10071-101I8;0.0170468!10071-101I8;0.000894089!10041-101F5;0.576859!10451-106G1;0.00187662!10450-106F9;0.000246528!10604-108F1;4.87134e-05!10605-108F2;0.00481532!10606-108F3;0.00259554!10603-108E9;0.00225846!10497-107C2;0.00300572!10448-106F7;0.00155774!10643-109A4;0.0177839!10426-106D3;0.00376796!10431-106D8;0.00071662!10197-103E8;0.000907051!10443-106F2;0.000296788!10815-111B5;0.0708212!10816-111B6;0.0211594!10817-111B7;0.00608966!10015-101C6;0.0105623!10410-106B5;0.00224657!10054-101G9;0.027579!10758-110E2;0.00324501!10711-109H9;0.00945124!10040-101F4;0.00240481!10470-106I2;0.596182!10415-106C1;2.72979e-05!10198-103E9;0.00893389!10614-108G2;0.00105069!10612-108F9;0.0225977!10549-107H9;2.40744e-06!10615-108G3;0.00106894!10487-107B1;0.00017384!10433-106E1;0.0787201!10688-109F4;0.00262759!10444-106F3;0.00128005!10444-106F3;0.00655819!10485-107A8;0.00296216!10413-106B8;0.0043284!10175-103C4;0.0527625!10161-103A8;0.372804!12131-128D7;0.208554!10624-108H3;0.0174591!10712-109I1;0.164267!10205-103F7;0.927924!10206-103F8;0.00067713!10207-103F9;0.00241758!10050-101G5;0.0258132!10051-101G6;0.000798481!10016-101C7;8.37968e-05!10046-101G1;0.000788274!10778-110G4;0.0028012!10633-108I3;0.149945!10818-111B8;0.0151435!10819-111B9;0.0790931!10820-111C1;0.0802977!10484-107A7;0.0735441!10808-111A7;0.000142624!10169-103B7;0.154979!10153-102I9;0.508276!13425-144D5;0.461997!13433-144E4;6.7713e-05!13437-144E8;5.77823e-06!11904-125F5;2.21474e-05!11905-125F6;0.317614!10039-101F3;0.19583!10791-110H8;0.56998!10017-101C8;0.000308883!10045-101F9;0.00432956!10509-107D5;0.0291293!10839-111E2;0.00201715!10692-109F8;0.0226551!10079-102A7;0.00183627!10078-102A6;8.52926e-05!10721-110A1;0.000220551!10569-108B2;0.00915111!10570-108B3;0.0375096!10571-108B4;0.00340648!10647-109A8;0.0571139!10752-110D5;0.0200452!10782-110G8;0.00443524!10726-110A6;0.138064!10018-101C9;0.0110099!10086-102B5;0.000979693!10182-103D2;7.2906e-05!10165-103B3;0.392165!10499-107C4;0.166389!10408-106B3;0.00317187!10019-101D1;0.00154792!10068-101I5;0.000602101!10075-102A3;0.00899238!10077-102A5;7.75207e-05!10727-110A7;0.000205502!10775-110G1;0.155964!10412-106B7;0.0991239!12231-129F8;0.00532471!12232-129F9;0.48724!12233-129G1;0.17827!12234-129G2;0.20839!10414-106B9;0.763484!10170-103B8;1.05374e-06!10183-103D3;0.762279!10150-102I6;0.611837!10174-103C3;0.53535!10155-103A2;0.0568006!10038-101F2;0.0674829!10838-111E1;0.055905!10759-110E3;0.00438325!10514-107E1;4.12636e-05!10465-106H6;0.000439884!10691-109F7;0.000440619!10843-111E6;0.0349814!10844-111E7;0.000460229!11747-123G1;0.00284075!11748-123G2;0.728309!11749-123G3;0.359489!11750-123G4;0.144008!11751-123G5;0.0317638!11840-124H4;0.00175283!11752-123G6;0.00645269!11753-123G7;0.192161!11754-123G8;0.0244908!11755-123G9;0.440186!11756-123H1;0.995246!11833-124G6;0.741461!11760-123H5;0.629991!11836-124G9;0.925065!11758-123H3;0.122562!11835-124G8;0.0798918!11762-123H7;0.00909889!11838-124H2;0.00703164!11757-123H2;0.0683272!11759-123H4;0.111717!11761-123H6;0.240779!11842-124H6;0.32309!11837-124H1;0.0146191!10568-108B1;0.0311533!13230-141I8;0.0739419!13231-141I9;0.0239726!10696-109G3;0.0999433!10493-107B7;0.267557!10494-107B8;0.00810326!10850-111F4;9.64008e-05!10851-111F5;0.0248261!10852-111F6;0.0054517!10853-111F7;0.216981!10854-111F8;0.0107329!10855-111F9;0.0121031!10856-111G1;0.809589!10847-111F1;0.000945042!10846-111E9;0.00960517!10848-111F2;0.00104947!10845-111E8;0.0144527!10857-111G2;6.29597e-05!10858-111G3;0.0653403!10156-103A3;0.087055!11901-125F2;0.514522!11902-125F3;0.550874!11903-125F4;0.232387!10689-109F5;0.251289!10648-109A9;0.00537666!10784-110H1;0.000571653!10744-110C6;0.000560971!10772-110F7;0.567388!10474-106I6;0.0287269!10600-108E6;0.987724!10684-109E9;0.0153586!12226-129F3;0.0521495!12227-129F4;0.0369245!10508-107D4;0.297252!10539-107G8;0.0103882!10607-108F4;0.0104233!10555-107I6;0.000190086!10774-110F9;0.00963806!10637-108I7;0.00219848!10663-109C6;0.000387669!10728-110A8;0.000469931!10729-110A9;0.00230273!10430-106D7;0.813455!10730-110B1;6.71964e-05!10813-111B3;0.000185871!10812-111B2;0.920135!10037-101F1;0.208202!10172-103C1;0.494317!10163-103B1;0.770132!10076-102A4;0.516486!10073-102A1;0.598255!10036-101E9;0.409649!10195-103E6;0.512492!10277-104E7;0.415487!10434-106E2;0.213971!10550-107I1;0.00176577!10545-107H5;7.22822e-05!10544-107H4;0.00653524!10704-109H2;0.00812428!10510-107D6;0.458391!10558-107I9;0.00788348!10020-101D2;0.0109225!10732-110B3;0.00706294!10049-101G4;0.0451905!10698-109G5;0.0816626!10437-106E5;0.0113865!10417-106C3;0.000450129!10035-101E8;0.00488134!10171-103B9;0.552579!10157-103A4;0.653335!10034-101E7;0.524982!10072-101I9;0.505469!10199-103F1;0.431867!10200-103F2;0.00251543!10697-109G4;0.000385805!10723-110A3;0.00106015!10179-103C8;0.00383431!10160-103A7;0.244689!10180-103C9;0.375605!10162-103A9;0.40521!10021-101D3;0.773265!10840-111E3;2.48194e-05!10706-109H4;0.169272!10033-101E6;0.0987948!10032-101E5;0.256087!10490-107B4;0.475322!10439-106E7;0.000482483!10022-101D4;1.41207e-09!10176-103C5;0.00473039!10469-106I1;0.733532!10067-101I4;0.0144689!10411-106B6;0.173141!10471-106I3;0.324851!10030-101E3;0.0789984!10475-106I7;0.0246641!10787-110H4;0.00021913!10477-106I9;0.00179556!10695-109G2;0.0682317!11771-123I7;0.803927!11772-123I8;0.000476124!11773-123I9;0.0134488!10093-102C3;0.114046!10442-106F1;0.00992147!10442-106F1;0.126733!10201-103F3;0.123433!10639-108I9;0.00304961!11843-124H7;0.00443745!11841-124H5;0.00315375!10693-109F9;0.0049016!10436-106E4;0.00107052!10483-107A6;0.0398474!10282-104F3;0.0296609!10023-101D5;0.000784167!10066-101I3;0.000251763!10065-101I2;0.00019062!10800-110I8;0.00117381!10610-108F7;1.72848e-05!10841-111E4;0.00167485!10541-107H1;0.000476944!10842-111E5;2.82903e-06!10562-108A4;0.0020433!10024-101D6;0.000262356!10064-101I1;0.000919373!10609-108F6;4.59872e-05!10048-101G3;0.00653388!10781-110G7;0.00900528!10181-103D1;0.0138919!10159-103A6;0.128921!10056-101H2;0.0669094!10737-110B8;0.0948879!10025-101D7;0.714169!10044-101F8;0.000502834!10424-106D1;0.00041787!10463-106H4;0.168594!10616-108G4;0.000904223!10486-107A9;0.00914323!10062-101H8;0.00989215!10202-103F4;0.0272573!10158-103A5;0.00247165!10441-106E9;0.0187372!10031-101E4;0.00154417!10063-101H9;0.424374!10063-101H9;0.502274!11763-123H8;0.00128097!11765-123I1;0.00625062!11768-123I4;0.00168239!10807-111A6;0.00843713!10790-110H7;0.0107484!10798-110I6;0.00135239!10786-110H3;0.0448426!10591-108D6;0.000527761!10593-108D8;0.000456213!10590-108D5;0.0050481!10026-101D8;0.000225394!10096-102C6;0.00183181!10168-103B6;0.616082!10154-103A1;0.201785!10209-103G2;0.186535!10061-101H7;0.000776264!10027-101D9;0.000561253!10043-101F7;0.426934!10783-110G9;0.0292953!10028-101E1;0.0255448!10060-101H6;0.0499252!10203-103F5;0.0166987!10059-101H5;0.000644553!10047-101G2;0.000197281!10029-101E2;0.000657757!10058-101H4;0.000588423!10418-106C4;0.000500872!10492-107B6;2.35733e-05!10694-109G1;0.00325529!10797-110I5;0.286645!10057-101H3;0.000320125!10100-102D1;0.000246787!10055-101H1;0.0157238!10204-103F6;0.0491146!10191-103E2;0.123313!10563-108A5;7.30944e-05
|name=CNhs12013_bu_f2
|name=CNhs12013_bu_f2
|tomtom_result=PPARG::RXRA#MA0065.2;1;0.00120427;0.573235;1;12;AGGGGCAGGAGG;GTAGGGCAAAGGTCA;+!Trl#MA0205.1;-1;0.00541783;2.57889;1;10;AGGGGCAGGAGG;GAGAGAGCAA;-!HNF4A#MA0114.1;-1;0.0062933;2.99561;1;11;AGGGGCAGGAGG;AGGCCAAAGGTCA;+!ELK1#MA0028.1;-1;0.00701131;3.33738;1;10;AGGGGCAGGAGG;GAGCCGGAAG;+!Klf4#MA0039.1;1;0.00900592;4.28682;1;9;AGGGGCAGGAGG;TAAAGGAAGG;+!ESR1#MA0112.2;-1;0.0107782;5.13041;1;11;AGGGGCAGGAGG;AGGTCAGGGTGACCTGGGCC;-!ESR2#MA0258.1;1;0.0107788;5.13071;1;12;AGGGGCAGGAGG;CAAGGTCACGGTGACCTG;+!Pax4#MA0068.1;4;0.0121527;5.78468;1;12;AGGGGCAGGAGG;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!BAS1#MA0278.1;8;0.0131115;6.24109;1;12;AGGGGCAGGAGG;GCACAGCCAGAGTCAAGTCAA;+!TFAP2A#MA0003.1;-3;0.0135149;6.43311;1;9;AGGGGCAGGAGG;GCCCGGGGG;+!Hand1::Tcfe2a#MA0092.1;-1;0.0137203;6.53084;1;10;AGGGGCAGGAGG;ATGCCAGACC;-!RXR::RAR_DR5#MA0159.1;-1;0.0146236;6.96083;1;11;AGGGGCAGGAGG;AGGTCATGGAGAGGTCA;+!YJL103C#MA0427.1;-1;0.0190571;9.0712;1;11;AGGGGCAGGAGG;AGCTCCGGAGA;+!SOK2#MA0385.1;0;0.0201398;9.58654;1;11;AGGGGCAGGAGG;ACCTGCAGGCA;+!SFL1#MA0377.1;2;0.0206826;9.84492;1;12;AGGGGCAGGAGG;TAGAGAATAGAAGAAATAAAA;+!Tcfcp2l1#MA0145.1;6;0.0209611;9.97751;1;8;AGGGGCAGGAGG;CCAGTTCAAACCAG;+!Ar#MA0007.1;3;0.0209933;9.9928;1;12;AGGGGCAGGAGG;GGCGGGTACACGATGTTCTTAT;-
}}
}}

Latest revision as of 12:49, 7 September 2012

Full Name: CNhs12013_bu_f2

Motif matrix
POACGT
1790.6165014907067217.10478399199732597.7635152038288356.54005549770676
2618.1042488700143134.248635505752421126.668206070564383.00376573790751
3807.985672129503257.886022248223654891.3542501209417204.79891168557074
4513.490697552885590.051061520276661286.550786602384771.9323105086915
5550.1810603611797590.7802506199738743.987601570546677.07594363254034
60.01962.02485618423770.00.0
71962.02485618423770.00.00.0
828.165249467619123.575744793143011926.69217385055663.591688072918794
9755.4847750957617345.3025319157416791.493660835672669.74388833706348
10929.0842614667048209.62906003989056653.5386337928021169.77290088484028
11480.04112527571203169.391444265739921030.1888363079854282.4034503348017
12596.282515025393425.8968132410124712.7421548886063227.10337302922872

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
PPARG::RXRA#MA0065.210.001204270.573235112AGGGGCAGGAGGGTAGGGCAAAGGTCA+
Trl#MA0205.1-10.005417832.57889110AGGGGCAGGAGGGAGAGAGCAA-
HNF4A#MA0114.1-10.00629332.99561111AGGGGCAGGAGGAGGCCAAAGGTCA+
ELK1#MA0028.1-10.007011313.33738110AGGGGCAGGAGGGAGCCGGAAG+
Klf4#MA0039.110.009005924.2868219AGGGGCAGGAGGTAAAGGAAGG+
ESR1#MA0112.2-10.01077825.13041111AGGGGCAGGAGGAGGTCAGGGTGACCTGGGCC-
ESR2#MA0258.110.01077885.13071112AGGGGCAGGAGGCAAGGTCACGGTGACCTG+
Pax4#MA0068.140.01215275.78468112AGGGGCAGGAGGGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
BAS1#MA0278.180.01311156.24109112AGGGGCAGGAGGGCACAGCCAGAGTCAAGTCAA+
TFAP2A#MA0003.1-30.01351496.4331119AGGGGCAGGAGGGCCCGGGGG+
Hand1::Tcfe2a#MA0092.1-10.01372036.53084110AGGGGCAGGAGGATGCCAGACC-
RXR::RAR_DR5#MA0159.1-10.01462366.96083111AGGGGCAGGAGGAGGTCATGGAGAGGTCA+
YJL103C#MA0427.1-10.01905719.0712111AGGGGCAGGAGGAGCTCCGGAGA+
SOK2#MA0385.100.02013989.58654111AGGGGCAGGAGGACCTGCAGGCA+
SFL1#MA0377.120.02068269.84492112AGGGGCAGGAGGTAGAGAATAGAAGAAATAAAA+
Tcfcp2l1#MA0145.160.02096119.9775118AGGGGCAGGAGGCCAGTTCAAACCAG+
Ar#MA0007.130.02099339.9928112AGGGGCAGGAGGGGCGGGTACACGATGTTCTTAT-
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