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MacroAPE 1083:Motif CCNGAT: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;3984;0;0!02;0;3984;0;0!03;996;996;996;996!04;0;0;3984;0!05;3984;0;0;0!06;0;0;0;3984 |macroape_1083_sample_pvalues=11376-118A8;0.694683!1...")
 
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9878!10788-110H5;0.855901!10792-110H9;0.701636!10765-110E9;0.861277!10829-111D1;0.921409!10830-111D2;0.845735!10831-111D3;0.51408!10832-111D4;0.533831!10833-111D5;0.77171!10764-110E8;0.92676!10770-110F5;0.852172!10399-106A3;0.780905!10400-106A4;0.715364!10405-106A9;0.699539!10834-111D6;0.717107!10835-111D7;0.559625!10836-111D8;0.816126!10837-111D9;0.767666!10699-109G6;0.176285!10802-111A1;0.186944!10796-110I4;0.51099!10010-101C1;0.926559!10810-111A9;0.730975!10421-106C7;0.713071!10708-109H6;0.946038!12235-129G3;0.96576!12236-129G4;0.79258!12237-129G5;0.993707!10167-103B5;0.808896!10151-102I7;0.694108!10428-106D5;0.817448!10795-110I3;0.955651!10805-111A4;0.759344!10052-101G7;0.526266!10189-103D9;0.904223!10589-108D4;0.792907!10425-106D2;0.510091!10427-106D4;0.608291!10702-109G9;0.702348!10432-106D9;0.826088!10496-107C1;0.987084!10718-109I7;0.788534!10011-101C2;0.678386!10053-101G8;0.660283!10686-109F2;0.28851!10084-102B3;0.992713!10012-101C3;0.668178!10085-102B4;0.823319!10482-107A5;0.940159!10419-106C5;0.487282!10080-102A8;0.871962!10760-110E4;0.581337!10709-109H7;0.838844!10710-109H8;0.767449!10703-109H1;0.483952!10719-109I8;0.533349!10642-109A3;0.985992!10177-103C6;0.992976!10164-103B2;0.632454!10173-103C2;0.630584!10166-103B4;0.642228!10083-102B2;0.914149!10188-103D8;0.661087!10552-107I3;0.793934!10553-107I4;0.491844!10013-101C4;0.536963!10536-107G5;0.576401!10618-108G6;0.898308!10423-106C9;0.704573!10785-110H2;0.613409!12238-129G6;0.589161!12239-129G7;0.942852!12240-129G8;0.743837!10416-106C2;0.734237!10801-110I9;0.572844!10766-110F1;0.933906!10824-111C5;0.296776!10825-111C6;0.678166!10826-111C7;0.694059!10454-106G4;0.607044!10409-106B4;0.69636!10638-108I8;0.199889!10636-108I6;0.713203!10513-107D9;0.602242!10420-106C6;0.466399!10082-102B1;0.654659!10014-101C5;0.984142!10070-101I7;0.977093!10452-106G2;0.800901!10453-106G3;0.427354!10449-106F8;0.640064!10042-101F6;0.610137!10069-101I6;0.703468!10193-103E4;0.978412!10631-108I1;0.562168!10438-106E6;0.657042!10488-107B2;0.717508!10196-103E7;0.625886!10071-101I8;0.900084!10071-101I8;0.938353!10041-101F5;0.918212!10451-106G1;0.184412!10450-106F9;0.399687!10604-108F1;0.550095!10605-108F2;0.850307!10606-108F3;0.909247!10603-108E9;0.855105!10497-107C2;0.659398!10448-106F7;0.824116!10643-109A4;0.776478!10426-106D3;0.833744!10431-106D8;0.818296!10197-103E8;0.807665!10443-106F2;0.998208!10815-111B5;0.55822!10816-111B6;0.485208!10817-111B7;0.647436!10015-101C6;0.51773!10410-106B5;0.906009!10054-101G9;0.99142!10758-110E2;0.883231!10711-109H9;0.641212!10040-101F4;0.842412!10470-106I2;0.796168!10415-106C1;0.584062!10198-103E9;0.698571!10614-108G2;0.624682!10612-108F9;0.933611!10549-107H9;0.884925!10615-108G3;0.715196!10487-107B1;0.45056!10433-106E1;0.949042!10688-109F4;0.365042!10444-106F3;0.642546!10444-106F3;0.672338!10485-107A8;0.759429!10413-106B8;0.948676!10175-103C4;0.710663!10161-103A8;0.547948!12131-128D7;0.724375!10624-108H3;0.839973!10712-109I1;0.970979!10205-103F7;0.910084!10206-103F8;0.597863!10207-103F9;0.812114!10050-101G5;0.301192!10051-101G6;0.831517!10016-101C7;0.939514!10046-101G1;0.788837!10778-110G4;0.44732!10633-108I3;0.629765!10818-111B8;0.741167!10819-111B9;0.586244!10820-111C1;0.612472!10484-107A7;0.626888!10808-111A7;0.831637!10169-103B7;0.932426!10153-102I9;0.772306!13425-144D5;0.845383!13433-144E4;0.766567!13437-144E8;0.744303!11904-125F5;0.835467!11905-125F6;0.541655!10039-101F3;0.788596!10791-110H8;0.779484!10017-101C8;0.366043!10045-101F9;0.768505!10509-107D5;0.758213!10839-111E2;0.988778!10692-109F8;0.258422!10079-102A7;0.582616!10078-102A6;0.79189!10721-110A1;0.91289!10569-108B2;0.302821!10570-108B3;0.494971!10571-108B4;0.237834!10647-109A8;0.704874!10752-110D5;0.908362!10782-110G8;0.653577!10726-110A6;0.843851!10018-101C9;0.684123!10086-102B5;0.92574!10182-103D2;0.875335!10165-103B3;0.690889!10499-107C4;0.672252!10408-106B3;0.386633!10019-101D1;0.701555!10068-101I5;0.515348!10075-102A3;0.284141!10077-102A5;0.625113!10727-110A7;0.179324!10775-110G1;0.628884!10412-106B7;0.750378!12231-129F8;0.79235!12232-129F9;0.940016!12233-129G1;0.94601!12234-129G2;0.870945!10414-106B9;0.840861!10170-103B8;0.860582!10183-103D3;0.749424!10150-102I6;0.818381!10174-103C3;0.88913!10155-103A2;0.586066!10038-101F2;0.698713!10838-111E1;0.729043!10759-110E3;0.738764!10514-107E1;0.875764!10465-106H6;0.696184!10691-109F7;0.97617!10843-111E6;0.387062!10844-111E7;0.952509!11747-123G1;0.94151!11748-123G2;0.392767!11749-123G3;0.434434!11750-123G4;0.377191!11751-123G5;0.596606!11840-124H4;0.655378!11752-123G6;0.992752!11753-123G7;0.901141!11754-123G8;0.459326!11755-123G9;0.264273!11756-123H1;0.384768!11833-124G6;0.369529!11760-123H5;0.684103!11836-124G9;0.151714!11758-123H3;0.228099!11835-124G8;0.320094!11762-123H7;0.747771!11838-124H2;0.189256!11757-123H2;0.775206!11759-123H4;0.444643!11761-123H6;0.450413!11842-124H6;0.378049!11837-124H1;0.440736!10568-108B1;0.48103!13230-141I8;0.783819!13231-141I9;0.632953!10696-109G3;0.533955!10493-107B7;0.903114!10494-107B8;0.997365!10850-111F4;0.661403!10851-111F5;0.36266!10852-111F6;0.862409!10853-111F7;0.4303!10854-111F8;0.606752!10855-111F9;0.831932!10856-111G1;0.811463!10847-111F1;0.800511!10846-111E9;0.237789!10848-111F2;0.650812!10845-111E8;0.936803!10857-111G2;0.615886!10858-111G3;0.249714!10156-103A3;0.467622!11901-125F2;0.854323!11902-125F3;0.41107!11903-125F4;0.224288!10689-109F5;0.406803!10648-109A9;0.739007!10784-110H1;0.351687!10744-110C6;0.715136!10772-110F7;0.398355!10474-106I6;0.829097!10600-108E6;0.334592!10684-109E9;0.676393!12226-129F3;0.435273!12227-129F4;0.661064!10508-107D4;0.786223!10539-107G8;0.586875!10607-108F4;0.886414!10555-107I6;0.813674!10774-110F9;0.972982!10637-108I7;0.973008!10663-109C6;0.421122!10728-110A8;0.897077!10729-110A9;0.748314!10430-106D7;0.881606!10730-110B1;0.828505!10813-111B3;0.638098!10812-111B2;0.468746!10037-101F1;0.946161!10172-103C1;0.745309!10163-103B1;0.790512!10076-102A4;0.864517!10073-102A1;0.765997!10036-101E9;0.91051!10195-103E6;0.743366!10277-104E7;0.819967!10434-106E2;0.582314!10550-107I1;0.50161!10545-107H5;0.549417!10544-107H4;0.560817!10704-109H2;0.699796!10510-107D6;0.818901!10558-107I9;0.786285!10020-101D2;0.726774!10732-110B3;0.351653!10049-101G4;0.93784!10698-109G5;0.934734!10437-106E5;0.778179!10417-106C3;0.113899!10035-101E8;0.883122!10171-103B9;0.728206!10157-103A4;0.693648!10034-101E7;0.867426!10072-101I9;0.746112!10199-103F1;0.830036!10200-103F2;0.938296!10697-109G4;0.964292!10723-110A3;0.997383!10179-103C8;0.760116!10160-103A7;0.965907!10180-103C9;0.699346!10162-103A9;0.703258!10021-101D3;0.790454!10840-111E3;0.55987!10706-109H4;0.395573!10033-101E6;0.71416!10032-101E5;0.739764!10490-107B4;0.732051!10439-106E7;0.46255!10022-101D4;0.428157!10176-103C5;0.627961!10469-106I1;0.624572!10067-101I4;0.751794!10411-106B6;0.622286!10471-106I3;0.536765!10030-101E3;0.791464!10475-106I7;0.762471!10787-110H4;0.895588!10477-106I9;0.965413!10695-109G2;0.511759!11771-123I7;0.596498!11772-123I8;0.397349!11773-123I9;0.636066!10093-102C3;0.705111!10442-106F1;0.974882!10442-106F1;0.494911!10201-103F3;0.48863!10639-108I9;0.888929!11843-124H7;0.585676!11841-124H5;0.30909!10693-109F9;0.488088!10436-106E4;0.532942!10483-107A6;0.87663!10282-104F3;0.858037!10023-101D5;0.580153!10066-101I3;0.583683!10065-101I2;0.521085!10800-110I8;0.715511!10610-108F7;0.74132!10841-111E4;0.673709!10541-107H1;0.893454!10842-111E5;0.774296!10562-108A4;0.988896!10024-101D6;0.545319!10064-101I1;0.986289!10609-108F6;0.934015!10048-101G3;0.951333!10781-110G7;0.516031!10181-103D1;0.702499!10159-103A6;0.757188!10056-101H2;0.627675!10737-110B8;0.974518!10025-101D7;0.915674!10044-101F8;0.188332!10424-106D1;0.172953!10463-106H4;0.359264!10616-108G4;0.654346!10486-107A9;0.656934!10062-101H8;0.889943!10202-103F4;0.626206!10158-103A5;0.796383!10441-106E9;0.648443!10031-101E4;0.808299!10063-101H9;0.728663!10063-101H9;0.800119!11763-123H8;0.920037!11765-123I1;0.40362!11768-123I4;0.552761!10807-111A6;0.584403!10790-110H7;0.690848!10798-110I6;0.903276!10786-110H3;0.987683!10591-108D6;0.79659!10593-108D8;0.959435!10590-108D5;0.709558!10026-101D8;0.834006!10096-102C6;0.902309!10168-103B6;0.446118!10154-103A1;0.676427!10209-103G2;0.697506!10061-101H7;0.966844!10027-101D9;0.926511!10043-101F7;0.842005!10783-110G9;0.74457!10028-101E1;0.867286!10060-101H6;0.916758!10203-103F5;0.902326!10059-101H5;0.842038!10047-101G2;0.940507!10029-101E2;0.883573!10058-101H4;0.946681!10418-106C4;0.815049!10492-107B6;0.998384!10694-109G1;0.675476!10797-110I5;0.344576!10057-101H3;0.784535!10100-102D1;0.800134!10055-101H1;0.455934!10204-103F6;0.46239!10191-103E2;0.651004!10563-108A5;0.926449
|name=motif_CCNGAT
|name=motif_CCNGAT
|tomtom_result=ASH1#MA0276.1;0;0.000617835;0.294089;0.588178;6;CCAGAT;CCCGATCCGG;-!ASG1#MA0275.1;0;0.00198585;0.945265;0.717637;6;CCAGAT;CCGGAA;+!RDS2#MA0362.1;1;0.00375405;1.78693;0.893463;6;CCAGAT;CCCCGAG;-!CAT8#MA0280.1;0;0.00534093;2.54228;1;6;CCAGAT;CCGGAA;+!ECM22#MA0292.1;1;0.00653062;3.10858;1;6;CCAGAT;TCCGGAG;-!MCM1#MA0331.1;0;0.00945334;4.49979;1;6;CCAGAT;CCCAATTAGGAA;+!YER184C#MA0424.1;2;0.0100056;4.76268;1;6;CCAGAT;TTCCGGAG;-!AG#MA0005.1;1;0.0120355;5.72888;1;6;CCAGAT;ACCAAATTTGG;-!Hand1::Tcfe2a#MA0092.1;3;0.0127271;6.05808;1;6;CCAGAT;ATGCCAGACC;-!TAL1::TCF3#MA0091.1;1;0.0145701;6.93538;1;6;CCAGAT;AACAGATGGTCG;-
}}
}}

Latest revision as of 12:48, 7 September 2012

Full Name: motif_CCNGAT

Motif matrix
POACGT
010398400
020398400
03996996996996
040039840
053984000
060003984

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
ASH1#MA0276.100.0006178350.2940890.5881786CCAGATCCCGATCCGG-
ASG1#MA0275.100.001985850.9452650.7176376CCAGATCCGGAA+
RDS2#MA0362.110.003754051.786930.8934636CCAGATCCCCGAG-
CAT8#MA0280.100.005340932.5422816CCAGATCCGGAA+
ECM22#MA0292.110.006530623.1085816CCAGATTCCGGAG-
MCM1#MA0331.100.009453344.4997916CCAGATCCCAATTAGGAA+
YER184C#MA0424.120.01000564.7626816CCAGATTTCCGGAG-
AG#MA0005.110.01203555.7288816CCAGATACCAAATTTGG-
Hand1::Tcfe2a#MA0092.130.01272716.0580816CCAGATATGCCAGACC-
TAL1::TCF3#MA0091.110.01457016.9353816CCAGATAACAGATGGTCG-
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