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MacroAPE 1083:Motif GNATTC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;592;0!02;148;148;148;148!03;592;0;0;0!04;0;0;0;592!05;0;0;0;592!06;0;592;0;0 |macroape_1083_sample_pvalues=11376-118A8;4.51043e-06!113...")
 
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A2;0.0140815!11693-123A1;0.0223537!11292-117A5;0.013789!11369-118A1;0.797746!11441-118I1;0.882955!10007-101B4;0.499496!11520-119H8;0.139193!11600-120H7;0.0178528!11681-122H7;0.103641!11216-116B1;0.0899233!12179-129A1;0.0161652!12180-129A2;0.000132632!12181-129A3;4.57667e-05!12176-128I7;6.62557e-05!12177-128I8;1.70141e-05!12182-129A4;3.56566e-05!12183-129A5;0.000319426!12184-129A6;0.000254115!10809-111A8;3.99796e-05!10597-108E3;0.629762!10717-109I6;0.771121!10455-106G5;0.152889!10534-107G3;0.00251771!10429-106D6;0.00963235!10464-106H5;0.00110494!10827-111C8;0.00984592!10789-110H6;0.0245885!10828-111C9;0.0148468!10788-110H5;0.00131465!10792-110H9;0.0159384!10765-110E9;0.00301614!10829-111D1;0.0038617!10830-111D2;0.00882117!10831-111D3;0.0181917!10832-111D4;0.0504593!10833-111D5;0.00305019!10764-110E8;0.00513232!10770-110F5;0.000554362!10399-106A3;0.00335408!10400-106A4;0.00413266!10405-106A9;0.0021802!10834-111D6;0.000738051!10835-111D7;0.0263073!10836-111D8;0.0602729!10837-111D9;0.0622457!10699-109G6;0.0342531!10802-111A1;0.0738099!10796-110I4;0.171304!10010-101C1;0.682155!10810-111A9;0.680811!10421-106C7;0.676034!10708-109H6;5.99687e-06!12235-129G3;0.12644!12236-129G4;6.8709e-05!12237-129G5;0.153766!10167-103B5;0.0039204!10151-102I7;0.956803!10428-106D5;0.853973!10795-110I3;0.328328!10805-111A4;0.0417325!10052-101G7;0.452505!10189-103D9;0.192152!10589-108D4;0.60016!10425-106D2;0.0291865!10427-106D4;0.126163!10702-109G9;0.00590505!10432-106D9;0.00499297!10496-107C1;0.0215859!10718-109I7;0.901462!10011-101C2;0.00944395!10053-101G8;0.109184!10686-109F2;1.76181e-05!10084-102B3;6.79665e-06!10012-101C3;0.814338!10085-102B4;0.854771!10482-107A5;0.749451!10419-106C5;0.51651!10080-102A8;0.575212!10760-110E4;0.265577!10709-109H7;0.79742!10710-109H8;0.8954!10703-109H1;0.455344!10719-109I8;0.00100604!10642-109A3;0.100739!10177-103C6;0.864616!10164-103B2;0.983041!10173-103C2;0.707922!10166-103B4;0.86558!10083-102B2;0.933762!10188-103D8;0.847203!10552-107I3;0.923685!10553-107I4;0.812913!10013-101C4;0.380976!10536-107G5;0.108359!10618-108G6;0.749351!10423-106C9;0.267006!10785-110H2;0.177375!12238-129G6;0.12931!12239-129G7;2.68492e-06!12240-129G8;5.59592e-10!10416-106C2;0.000313287!10801-110I9;0.00140057!10766-110F1;0.0233464!10824-111C5;0.0554906!10825-111C6;0.275674!10826-111C7;0.251438!10454-106G4;0.288213!10409-106B4;0.303559!10638-108I8;0.0408804!10636-108I6;0.563607!10513-107D9;0.223356!10420-106C6;0.214849!10082-102B1;0.0909946!10014-101C5;0.327443!10070-101I7;0.24861!10452-106G2;0.44331!10453-106G3;0.0287706!10449-106F8;0.000738097!10042-101F6;0.00205047!10069-101I6;0.992724!10193-103E4;0.0526592!10631-108I1;0.746149!10438-106E6;0.00211382!10488-107B2;0.282783!10196-103E7;0.59325!10071-101I8;0.340098!10071-101I8;0.444109!10041-101F5;0.800239!10451-106G1;0.742268!10450-106F9;0.320848!10604-108F1;0.481544!10605-108F2;0.261957!10606-108F3;0.527156!10603-108E9;0.296406!10497-107C2;0.581151!10448-106F7;0.558698!10643-109A4;0.972471!10426-106D3;0.517885!10431-106D8;0.431907!10197-103E8;0.316474!10443-106F2;0.422696!10815-111B5;0.0104266!10816-111B6;0.603064!10817-111B7;0.595281!10015-101C6;0.625948!10410-106B5;0.0933417!10054-101G9;0.409745!10758-110E2;0.434646!10711-109H9;0.432219!10040-101F4;0.816486!10470-106I2;0.696302!10415-106C1;0.382557!10198-103E9;0.0118943!10614-108G2;0.267142!10612-108F9;0.86266!10549-107H9;0.556102!10615-108G3;0.683503!10487-107B1;0.0889244!10433-106E1;0.656335!10688-109F4;0.0753467!10444-106F3;0.340518!10444-106F3;0.418753!10485-107A8;0.369535!10413-106B8;0.50071!10175-103C4;0.898494!10161-103A8;0.980477!12131-128D7;0.72605!10624-108H3;0.0885001!10712-109I1;0.271763!10205-103F7;4.03341e-05!10206-103F8;0.105775!10207-103F9;0.190342!10050-101G5;0.106204!10051-101G6;0.00274704!10016-101C7;0.160069!10046-101G1;0.158687!10778-110G4;0.116433!10633-108I3;1.64762e-05!10818-111B8;0.225459!10819-111B9;0.765394!10820-111C1;0.789023!10484-107A7;0.838998!10808-111A7;0.660871!10169-103B7;0.0727644!10153-102I9;0.917383!13425-144D5;0.952861!13433-144E4;0.909335!13437-144E8;0.8542!11904-125F5;0.811203!11905-125F6;0.257416!10039-101F3;0.23626!10791-110H8;0.780932!10017-101C8;0.613737!10045-101F9;0.823019!10509-107D5;0.133242!10839-111E2;0.299558!10692-109F8;0.577822!10079-102A7;0.132118!10078-102A6;0.195329!10721-110A1;0.146634!10569-108B2;0.112946!10570-108B3;0.1735!10571-108B4;0.0862601!10647-109A8;0.111839!10752-110D5;0.128407!10782-110G8;0.0159962!10726-110A6;0.00110044!10018-101C9;0.196593!10086-102B5;0.270781!10182-103D2;0.377328!10165-103B3;0.903117!10499-107C4;0.838256!10408-106B3;0.714655!10019-101D1;0.38114!10068-101I5;0.67547!10075-102A3;0.200458!10077-102A5;0.925768!10727-110A7;0.0167825!10775-110G1;0.00126624!10412-106B7;0.01923!12231-129F8;0.302607!12232-129F9;0.539081!12233-129G1;0.711458!12234-129G2;0.618949!10414-106B9;0.786651!10170-103B8;0.0453556!10183-103D3;0.78121!10150-102I6;0.882935!10174-103C3;0.839488!10155-103A2;0.813127!10038-101F2;0.960703!10838-111E1;0.87331!10759-110E3;0.470612!10514-107E1;0.352125!10465-106H6;0.594017!10691-109F7;0.36096!10843-111E6;0.0383567!10844-111E7;0.00126291!11747-123G1;0.101547!11748-123G2;0.00754737!11749-123G3;0.00054389!11750-123G4;0.0164397!11751-123G5;0.0234587!11840-124H4;0.00995885!11752-123G6;0.0210859!11753-123G7;0.0676749!11754-123G8;0.0071561!11755-123G9;0.00285914!11756-123H1;0.01041!11833-124G6;2.43793e-07!11760-123H5;0.153162!11836-124G9;0.000130332!11758-123H3;0.00164354!11835-124G8;0.00284546!11762-123H7;0.00259682!11838-124H2;0.000836032!11757-123H2;0.000176257!11759-123H4;0.00225022!11761-123H6;0.000255042!11842-124H6;0.00128278!11837-124H1;0.018071!10568-108B1;0.000103381!13230-141I8;0.0237341!13231-141I9;0.0188006!10696-109G3;0.0298112!10493-107B7;0.192152!10494-107B8;0.219623!10850-111F4;0.104103!10851-111F5;0.269823!10852-111F6;0.322218!10853-111F7;0.358126!10854-111F8;0.272803!10855-111F9;0.481254!10856-111G1;0.35135!10847-111F1;0.665451!10846-111E9;0.16909!10848-111F2;0.300082!10845-111E8;0.84865!10857-111G2;0.698663!10858-111G3;0.676815!10156-103A3;0.533133!11901-125F2;0.905474!11902-125F3;0.00411324!11903-125F4;0.00930327!10689-109F5;0.049042!10648-109A9;0.796792!10784-110H1;0.819989!10744-110C6;0.132357!10772-110F7;6.60744e-05!10474-106I6;0.00187659!10600-108E6;8.85941e-06!10684-109E9;0.0454072!12226-129F3;0.26467!12227-129F4;0.504183!10508-107D4;0.548956!10539-107G8;0.140996!10607-108F4;0.252886!10555-107I6;0.533241!10774-110F9;0.524034!10637-108I7;0.652243!10663-109C6;0.666137!10728-110A8;0.520947!10729-110A9;0.93015!10430-106D7;1.02504e-05!10730-110B1;0.0699534!10813-111B3;0.0165156!10812-111B2;0.00381901!10037-101F1;0.0675034!10172-103C1;0.823661!10163-103B1;0.976845!10076-102A4;0.953815!10073-102A1;0.802491!10036-101E9;0.77221!10195-103E6;0.725425!10277-104E7;0.93127!10434-106E2;0.79846!10550-107I1;0.758562!10545-107H5;0.849981!10544-107H4;0.477094!10704-109H2;0.315875!10510-107D6;0.00532138!10558-107I9;0.819295!10020-101D2;0.975906!10732-110B3;0.137583!10049-101G4;0.00223301!10698-109G5;0.551803!10437-106E5;0.140524!10417-106C3;0.455441!10035-101E8;0.000193039!10171-103B9;0.765503!10157-103A4;0.934705!10034-101E7;0.910992!10072-101I9;0.851685!10199-103F1;0.986353!10200-103F2;0.909801!10697-109G4;0.119086!10723-110A3;0.462378!10179-103C8;0.026738!10160-103A7;0.855022!10180-103C9;0.670635!10162-103A9;0.229618!10021-101D3;0.31622!10840-111E3;0.0294193!10706-109H4;0.00634636!10033-101E6;0.0415251!10032-101E5;0.661031!10490-107B4;0.712836!10439-106E7;0.591896!10022-101D4;0.331295!10176-103C5;0.178412!10469-106I1;0.699622!10067-101I4;0.0326951!10411-106B6;0.14429!10471-106I3;0.322286!10030-101E3;0.624767!10475-106I7;0.92085!10787-110H4;0.0621132!10477-106I9;0.799314!10695-109G2;0.690738!11771-123I7;0.00247537!11772-123I8;0.409135!11773-123I9;0.29457!10093-102C3;0.0697649!10442-106F1;0.468999!10442-106F1;0.470042!10201-103F3;0.386106!10639-108I9;0.0325546!11843-124H7;0.00478543!11841-124H5;0.569977!10693-109F9;0.581225!10436-106E4;0.870987!10483-107A6;0.617464!10282-104F3;0.630489!10023-101D5;0.354212!10066-101I3;0.349745!10065-101I2;0.11239!10800-110I8;0.119384!10610-108F7;0.00391045!10841-111E4;0.160331!10541-107H1;0.808869!10842-111E5;0.038843!10562-108A4;0.0931302!10024-101D6;0.0929423!10064-101I1;0.794122!10609-108F6;0.291853!10048-101G3;0.0973354!10781-110G7;0.0653571!10181-103D1;0.0572287!10159-103A6;0.709263!10056-101H2;0.959984!10737-110B8;0.457859!10025-101D7;3.4381e-05!10044-101F8;0.125698!10424-106D1;0.489432!10463-106H4;0.0143609!10616-108G4;0.880562!10486-107A9;0.0165154!10062-101H8;0.61799!10202-103F4;0.0814819!10158-103A5;0.682179!10441-106E9;0.627585!10031-101E4;0.368512!10063-101H9;0.765957!10063-101H9;0.859555!11763-123H8;0.535822!11765-123I1;0.00370506!11768-123I4;0.0180894!10807-111A6;0.00340342!10790-110H7;0.983569!10798-110I6;0.754124!10786-110H3;0.52071!10591-108D6;0.118828!10593-108D8;0.569979!10590-108D5;0.0812232!10026-101D8;0.507629!10096-102C6;0.991188!10168-103B6;0.273845!10154-103A1;0.823858!10209-103G2;0.720518!10061-101H7;0.265758!10027-101D9;0.257376!10043-101F7;0.000251377!10783-110G9;0.0170453!10028-101E1;0.257785!10060-101H6;0.890791!10203-103F5;0.135455!10059-101H5;0.0915549!10047-101G2;0.0406108!10029-101E2;0.534452!10058-101H4;0.584358!10418-106C4;0.161831!10492-107B6;0.242445!10694-109G1;0.6773!10797-110I5;0.00354557!10057-101H3;0.661683!10100-102D1;0.00511238!10055-101H1;0.103658!10204-103F6;0.0552599!10191-103E2;0.232149!10563-108A5;0.869294
|name=motif_GNATTC
|name=motif_GNATTC
|tomtom_result=REL#MA0101.1;3;0.00738074;3.51323;1;6;GAATTC;GGGGATTTCC;+!TEC1#MA0406.1;0;0.00797452;3.79587;1;6;GAATTC;ACATTCCC;+!NFKB1#MA0105.1;2;0.0116905;5.56466;1;6;GAATTC;GGGGATTCCCC;+!NF-kappaB#MA0061.1;2;0.0118039;5.61865;1;6;GAATTC;GGGAATTTCC;+!dl_2#MA0023.1;3;0.0127373;6.06297;1;6;GAATTC;GGGGATTTCC;+!lin-14#MA0261.1;0;0.017351;8.25907;1;6;GAATTC;GTGTTC;-
}}
}}

Latest revision as of 12:43, 7 September 2012

Full Name: motif_GNATTC

Motif matrix
POACGT
01005920
02148148148148
03592000
04000592
05000592
06059200

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
REL#MA0101.130.007380743.5132316GAATTCGGGGATTTCC+
TEC1#MA0406.100.007974523.7958716GAATTCACATTCCC+
NFKB1#MA0105.120.01169055.5646616GAATTCGGGGATTCCCC+
NF-kappaB#MA0061.120.01180395.6186516GAATTCGGGAATTTCC+
dl_2#MA0023.130.01273736.0629716GAATTCGGGGATTTCC+
lin-14#MA0261.100.0173518.2590716GAATTCGTGTTC-
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