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MacroAPE 1083:RAGAGAGAGAGAG,motif269: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;939.3;298.96;723.16;60.6!2;1454.4;2.02;507.02;56.56!3;337.34;96.96;1567.52;18.18!4;1494.8;40.4;385.82;98.98!5;349.46;145.44;1506.92;18.18!6;...")
 
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606502!12183-129A5;0.344839!12184-129A6;0.547539!10809-111A8;0.459307!10597-108E3;0.57283!10717-109I6;0.717005!10455-106G5;0.214861!10534-107G3;0.27825!10429-106D6;0.468048!10464-106H5;0.567773!10827-111C8;0.308837!10789-110H6;0.493411!10828-111C9;0.142677!10788-110H5;0.383314!10792-110H9;0.470925!10765-110E9;0.847894!10829-111D1;0.736854!10830-111D2;0.504088!10831-111D3;0.364104!10832-111D4;0.178722!10833-111D5;0.694824!10764-110E8;0.965027!10770-110F5;0.682709!10399-106A3;0.156827!10400-106A4;0.602946!10405-106A9;0.496693!10834-111D6;0.534772!10835-111D7;0.579552!10836-111D8;0.252653!10837-111D9;0.31779!10699-109G6;0.334093!10802-111A1;0.304824!10796-110I4;0.675007!10010-101C1;0.993039!10810-111A9;0.60691!10421-106C7;0.677282!10708-109H6;0.827444!12235-129G3;0.210393!12236-129G4;0.0117048!12237-129G5;0.00726553!10167-103B5;0.0140423!10151-102I7;0.00433131!10428-106D5;0.00515794!10795-110I3;0.969675!10805-111A4;0.785364!10052-101G7;0.117686!10189-103D9;0.261408!10589-108D4;0.345512!10425-106D2;0.104302!10427-106D4;0.00844757!10702-109G9;0.565247!10432-106D9;0.0228934!10496-107C1;0.03022!10718-109I7;0.794981!10011-101C2;0.771683!10053-101G8;0.331819!10686-109F2;0.687464!10084-102B3;0.349172!10012-101C3;0.00572847!10085-102B4;0.00540653!10482-107A5;0.0029411!10419-106C5;0.581093!10080-102A8;0.424264!10760-110E4;0.40514!10709-109H7;0.19826!10710-109H8;0.300698!10703-109H1;0.736112!10719-109I8;0.0334807!10642-109A3;0.238715!10177-103C6;0.298773!10164-103B2;0.00146237!10173-103C2;0.0042019!10166-103B4;0.000564669!10083-102B2;0.000372052!10188-103D8;0.00117331!10552-107I3;0.00563636!10553-107I4;0.314517!10013-101C4;0.124876!10536-107G5;0.27245!10618-108G6;0.210586!10423-106C9;0.780442!10785-110H2;0.514921!12238-129G6;0.293909!12239-129G7;0.0299113!12240-129G8;0.00951262!10416-106C2;0.243771!10801-110I9;0.325972!10766-110F1;0.698591!10824-111C5;0.679719!10825-111C6;0.877197!10826-111C7;0.854275!10454-106G4;0.941443!10409-106B4;0.977284!10638-108I8;0.894332!10636-108I6;0.776331!10513-107D9;0.854573!10420-106C6;0.878161!10082-102B1;0.699033!10014-101C5;0.275107!10070-101I7;0.146844!10452-106G2;0.257193!10453-106G3;0.934609!10449-106F8;0.563182!10042-101F6;0.446254!10069-101I6;0.0017297!10193-103E4;0.343381!10631-108I1;0.003594!10438-106E6;0.995333!10488-107B2;0.892164!10196-103E7;0.348754!10071-101I8;0.0811282!10071-101I8;0.099097!10041-101F5;0.00235369!10451-106G1;0.441248!10450-106F9;0.977653!10604-108F1;0.553875!10605-108F2;0.042608!10606-108F3;0.240882!10603-108E9;0.0150226!10497-107C2;0.0114431!10448-106F7;0.776291!10643-109A4;0.88691!10426-106D3;0.422248!10431-106D8;0.0423541!10197-103E8;0.00403782!10443-106F2;0.051089!10815-111B5;0.0749727!10816-111B6;0.643049!10817-111B7;0.266583!10015-101C6;0.554391!10410-106B5;0.314435!10054-101G9;0.485046!10758-110E2;0.000248409!10711-109H9;0.23009!10040-101F4;0.184074!10470-106I2;0.00530175!10415-106C1;0.759664!10198-103E9;0.0776478!10614-108G2;0.100316!10612-108F9;0.196436!10549-107H9;0.842816!10615-108G3;0.734019!10487-107B1;0.116709!10433-106E1;0.701829!10688-109F4;0.0584372!10444-106F3;0.347085!10444-106F3;0.0368836!10485-107A8;0.0210806!10413-106B8;0.237328!10175-103C4;0.0385141!10161-103A8;0.00383283!12131-128D7;0.00323831!10624-108H3;0.130071!10712-109I1;0.00867908!10205-103F7;0.739862!10206-103F8;0.0500578!10207-103F9;0.0792573!10050-101G5;0.462512!10051-101G6;0.100395!10016-101C7;0.00372224!10046-101G1;0.11631!10778-110G4;0.127578!10633-108I3;0.246953!10818-111B8;0.95263!10819-111B9;0.606581!10820-111C1;0.618388!10484-107A7;0.627931!10808-111A7;0.112711!10169-103B7;0.917668!10153-102I9;0.00176704!13425-144D5;0.00201164!13433-144E4;0.297683!13437-144E8;0.476551!11904-125F5;0.764413!11905-125F6;0.0926262!10039-101F3;0.224482!10791-110H8;0.00499123!10017-101C8;0.569848!10045-101F9;0.0032498!10509-107D5;0.0111434!10839-111E2;0.0837836!10692-109F8;0.611142!10079-102A7;0.0203526!10078-102A6;0.0542411!10721-110A1;0.177396!10569-108B2;0.983742!10570-108B3;0.618231!10571-108B4;0.127033!10647-109A8;0.484941!10752-110D5;0.266625!10782-110G8;0.714558!10726-110A6;0.174336!10018-101C9;0.174602!10086-102B5;0.00424016!10182-103D2;0.0638745!10165-103B3;0.00127778!10499-107C4;0.00177823!10408-106B3;0.287676!10019-101D1;0.319493!10068-101I5;0.147632!10075-102A3;0.0577918!10077-102A5;0.0566157!10727-110A7;0.708409!10775-110G1;0.0491484!10412-106B7;0.924494!12231-129F8;0.0897139!12232-129F9;0.75611!12233-129G1;0.999797!12234-129G2;0.894931!10414-106B9;0.592543!10170-103B8;0.0783921!10183-103D3;0.00623257!10150-102I6;0.00188916!10174-103C3;0.00226818!10155-103A2;0.000109259!10038-101F2;0.00018203!10838-111E1;0.000943365!10759-110E3;0.396711!10514-107E1;0.317402!10465-106H6;0.901303!10691-109F7;0.958946!10843-111E6;0.0833145!10844-111E7;0.144581!11747-123G1;0.0174874!11748-123G2;0.0238594!11749-123G3;0.136514!11750-123G4;0.188025!11751-123G5;0.645561!11840-124H4;0.945368!11752-123G6;0.523387!11753-123G7;0.155089!11754-123G8;0.73129!11755-123G9;0.196797!11756-123H1;0.0611795!11833-124G6;0.00417607!11760-123H5;0.0371396!11836-124G9;0.0154821!11758-123H3;0.0587617!11835-124G8;0.0362993!11762-123H7;0.0196246!11838-124H2;0.104447!11757-123H2;0.0564717!11759-123H4;0.00981128!11761-123H6;0.0350236!11842-124H6;0.219736!11837-124H1;0.0886311!10568-108B1;0.00443863!13230-141I8;0.901619!13231-141I9;0.112452!10696-109G3;0.106381!10493-107B7;0.13837!10494-107B8;0.161377!10850-111F4;0.0161205!10851-111F5;0.0537923!10852-111F6;0.0174035!10853-111F7;0.0368976!10854-111F8;0.00499606!10855-111F9;0.0865495!10856-111G1;0.333676!10847-111F1;0.278504!10846-111E9;0.030259!10848-111F2;0.0200999!10845-111E8;0.0923898!10857-111G2;0.997132!10858-111G3;0.619614!10156-103A3;0.0271091!11901-125F2;0.00196861!11902-125F3;0.994264!11903-125F4;0.863943!10689-109F5;0.804723!10648-109A9;0.0385801!10784-110H1;0.839964!10744-110C6;0.0942409!10772-110F7;0.331945!10474-106I6;0.392925!10600-108E6;0.0135297!10684-109E9;0.00379471!12226-129F3;0.897699!12227-129F4;0.0875178!10508-107D4;0.701924!10539-107G8;0.031006!10607-108F4;0.0566142!10555-107I6;0.230832!10774-110F9;0.111029!10637-108I7;0.385327!10663-109C6;0.189152!10728-110A8;0.171638!10729-110A9;0.746024!10430-106D7;0.15!10730-110B1;0.280342!10813-111B3;0.0119649!10812-111B2;0.258941!10037-101F1;0.35332!10172-103C1;0.00689655!10163-103B1;0.00269368!10076-102A4;0.00173173!10073-102A1;0.00463288!10036-101E9;0.00156091!10195-103E6;0.00483877!10277-104E7;0.00402473!10434-106E2;0.0125113!10550-107I1;0.295626!10545-107H5;0.432758!10544-107H4;0.0505974!10704-109H2;0.121572!10510-107D6;0.301042!10558-107I9;0.0555426!10020-101D2;0.455824!10732-110B3;0.0306141!10049-101G4;0.376734!10698-109G5;0.0982677!10437-106E5;0.431932!10417-106C3;0.0180333!10035-101E8;0.0902648!10171-103B9;0.00629923!10157-103A4;0.00287007!10034-101E7;0.00179245!10072-101I9;0.00495455!10199-103F1;0.00081567!10200-103F2;0.0132612!10697-109G4;0.287863!10723-110A3;0.78805!10179-103C8;0.0778879!10160-103A7;1.62802e-05!10180-103C9;1.72553e-06!10162-103A9;0.000421109!10021-101D3;0.000140232!10840-111E3;0.272665!10706-109H4;0.0806381!10033-101E6;0.109497!10032-101E5;0.00252!10490-107B4;0.00547105!10439-106E7;0.314162!10022-101D4;0.0615682!10176-103C5;0.154806!10469-106I1;0.00877116!10067-101I4;0.575316!10411-106B6;0.0577851!10471-106I3;0.609229!10030-101E3;0.649111!10475-106I7;0.000699194!10787-110H4;0.0585304!10477-106I9;0.596918!10695-109G2;0.732021!11771-123I7;0.238162!11772-123I8;0.0296077!11773-123I9;0.0396137!10093-102C3;0.138857!10442-106F1;0.00168532!10442-106F1;0.351757!10201-103F3;0.351426!10639-108I9;0.07296!11843-124H7;0.390207!11841-124H5;0.464045!10693-109F9;0.730483!10436-106E4;0.727655!10483-107A6;0.536181!10282-104F3;0.694933!10023-101D5;0.0603153!10066-101I3;0.213331!10065-101I2;0.39183!10800-110I8;0.142359!10610-108F7;0.202464!10841-111E4;0.0262465!10541-107H1;0.751173!10842-111E5;0.360393!10562-108A4;0.0818151!10024-101D6;5.06177e-05!10064-101I1;0.121874!10609-108F6;0.115795!10048-101G3;0.0256335!10781-110G7;0.438495!10181-103D1;0.00524968!10159-103A6;0.000570604!10056-101H2;0.00104101!10737-110B8;0.00284938!10025-101D7;0.00596409!10044-101F8;0.564449!10424-106D1;0.672708!10463-106H4;0.776302!10616-108G4;0.723393!10486-107A9;0.238849!10062-101H8;0.721128!10202-103F4;0.349664!10158-103A5;0.106119!10441-106E9;0.00600582!10031-101E4;0.759779!10063-101H9;0.00595321!10063-101H9;0.000820324!11763-123H8;0.0694492!11765-123I1;0.0367247!11768-123I4;0.427713!10807-111A6;0.206611!10790-110H7;0.28196!10798-110I6;0.632601!10786-110H3;0.941436!10591-108D6;0.0963155!10593-108D8;0.680692!10590-108D5;0.953398!10026-101D8;0.746824!10096-102C6;0.401513!10168-103B6;0.123708!10154-103A1;0.00263771!10209-103G2;0.00176051!10061-101H7;0.0192946!10027-101D9;0.078093!10043-101F7;0.115811!10783-110G9;0.202716!10028-101E1;0.0754206!10060-101H6;0.0293242!10203-103F5;0.0780227!10059-101H5;0.063094!10047-101G2;0.050093!10029-101E2;0.0616886!10058-101H4;0.201694!10418-106C4;0.144103!10492-107B6;0.182282!10694-109G1;0.0121948!10797-110I5;0.0104459!10057-101H3;0.20157!10100-102D1;0.0805954!10055-101H1;0.255503!10204-103F6;0.375423!10191-103E2;0.805252!10563-108A5;0.247724
|name=RAGAGAGAGAGAG,motif269,CNhs12311,T:2020.0(48.38%),B:26386.9(38.54%),P:1e-37
|name=RAGAGAGAGAGAG,motif269,CNhs12311,T:2020.0(48.38%),B:26386.9(38.54%),P:1e-37
|tomtom_result=Trl#MA0205.1;-2;1.85862e-05;0.00884703;0.0176941;10;AAGAGAGAGAGAG;GAGAGAGCAA;-!Klf4#MA0039.1;-1;0.00564782;2.68836;1;10;AAGAGAGAGAGAG;TAAAGGAAGG;+!Gata1#MA0035.2;-1;0.0103612;4.93195;1;11;AAGAGAGAGAGAG;ACAGATAAGAA;+!id1#MA0120.1;-1;0.0103657;4.93407;1;12;AAGAGAGAGAGAG;CGAAAAGGAAAA;-!HMG-I/Y#MA0045.1;1;0.0142133;6.76551;1;13;AAGAGAGAGAGAG;CAACAAATGGAAAAAC;+
}}
}}

Latest revision as of 12:31, 7 September 2012

Full Name: RAGAGAGAGAGAG,motif269,CNhs12311,T:2020.0(48.38%),B:26386.9(38.54%),P:1e-37

Motif matrix
POACGT
1939.3298.96723.1660.6
21454.42.02507.0256.56
3337.3496.961567.5218.18
41494.840.4385.8298.98
5349.46145.441506.9218.18
61551.3640.4373.754.54
7478.74133.321389.7618.18
81714.9828.28236.3440.4
9551.46153.521306.948.08
101323.1107.06466.62123.22
11397.94179.781426.1216.16
121468.5492.92395.9262.62
13468.64117.161397.8436.36

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Trl#MA0205.1-21.85862e-050.008847030.017694110AAGAGAGAGAGAGGAGAGAGCAA-
Klf4#MA0039.1-10.005647822.68836110AAGAGAGAGAGAGTAAAGGAAGG+
Gata1#MA0035.2-10.01036124.93195111AAGAGAGAGAGAGACAGATAAGAA+
id1#MA0120.1-10.01036574.93407112AAGAGAGAGAGAGCGAAAAGGAAAA-
HMG-I/Y#MA0045.110.01421336.76551113AAGAGAGAGAGAGCAACAAATGGAAAAAC+
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