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MacroAPE 1083:Motif TGNCAC: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!01;0;0;0;17376!02;0;0;17376;0!03;4344;4344;4344;4344!04;0;17376;0;0!05;17376;0;0;0!06;0;17376;0;0 |macroape_1083_sample_pvalues=11376-118A8;0...")
 
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-107G3;0.148783!10429-106D6;0.231727!10464-106H5;0.78075!10827-111C8;0.307554!10789-110H6;0.272562!10828-111C9;0.477212!10788-110H5;0.864304!10792-110H9;0.121713!10765-110E9;0.66782!10829-111D1;0.271354!10830-111D2;0.320332!10831-111D3;0.295623!10832-111D4;0.195322!10833-111D5;0.211757!10764-110E8;0.0858668!10770-110F5;0.141872!10399-106A3;0.343445!10400-106A4;0.0892527!10405-106A9;0.104833!10834-111D6;0.120003!10835-111D7;0.399286!10836-111D8;0.190278!10837-111D9;0.303312!10699-109G6;0.333166!10802-111A1;0.386913!10796-110I4;0.218031!10010-101C1;0.0487828!10810-111A9;0.0648297!10421-106C7;0.00491393!10708-109H6;0.495869!12235-129G3;0.0213506!12236-129G4;0.874559!12237-129G5;0.376128!10167-103B5;0.675049!10151-102I7;0.412903!10428-106D5;0.270688!10795-110I3;0.86993!10805-111A4;0.257247!10052-101G7;0.00529443!10189-103D9;0.0529765!10589-108D4;0.0505102!10425-106D2;0.0239007!10427-106D4;0.0349773!10702-109G9;0.946648!10432-106D9;0.188089!10496-107C1;0.0673858!10718-109I7;0.107572!10011-101C2;0.141879!10053-101G8;0.132863!10686-109F2;0.211811!10084-102B3;0.886007!10012-101C3;0.151046!10085-102B4;0.260991!10482-107A5;0.594284!10419-106C5;0.0267508!10080-102A8;0.264881!10760-110E4;0.0749208!10709-109H7;0.00198361!10710-109H8;0.0450637!10703-109H1;0.0215204!10719-109I8;0.523562!10642-109A3;0.280701!10177-103C6;0.027032!10164-103B2;0.299606!10173-103C2;0.410889!10166-103B4;0.357819!10083-102B2;0.276588!10188-103D8;0.180701!10552-107I3;0.363523!10553-107I4;0.0777681!10013-101C4;0.315681!10536-107G5;0.258268!10618-108G6;0.332617!10423-106C9;0.0218232!10785-110H2;0.019129!12238-129G6;0.0125929!12239-129G7;0.118139!12240-129G8;0.594288!10416-106C2;0.154275!10801-110I9;0.611565!10766-110F1;0.10726!10824-111C5;0.204825!10825-111C6;0.0631933!10826-111C7;0.0503102!10454-106G4;0.0718586!10409-106B4;0.0584825!10638-108I8;0.143912!10636-108I6;0.0264564!10513-107D9;0.159877!10420-106C6;0.0253897!10082-102B1;0.228489!10014-101C5;0.16686!10070-101I7;0.119243!10452-106G2;0.149914!10453-106G3;0.243443!10449-106F8;0.0963348!10042-101F6;0.0845108!10069-101I6;0.0862772!10193-103E4;0.0635778!10631-108I1;0.195922!10438-106E6;0.309989!10488-107B2;0.0175881!10196-103E7;0.0994811!10071-101I8;0.318478!10071-101I8;0.199775!10041-101F5;0.566044!10451-106G1;0.0666512!10450-106F9;0.312112!10604-108F1;0.258069!10605-108F2;0.0132866!10606-108F3;0.0236865!10603-108E9;0.0270956!10497-107C2;0.0366048!10448-106F7;0.0132352!10643-109A4;0.048173!10426-106D3;0.132134!10431-106D8;0.0246867!10197-103E8;0.0361252!10443-106F2;0.0931507!10815-111B5;0.0218314!10816-111B6;0.050548!10817-111B7;0.0705647!10015-101C6;0.0525804!10410-106B5;0.10378!10054-101G9;0.131419!10758-110E2;0.13088!10711-109H9;0.130319!10040-101F4;0.00359799!10470-106I2;0.288653!10415-106C1;0.0285466!10198-103E9;0.438505!10614-108G2;0.100802!10612-108F9;0.192415!10549-107H9;0.097563!10615-108G3;0.0368237!10487-107B1;0.210946!10433-106E1;0.25789!10688-109F4;0.251119!10444-106F3;0.0310413!10444-106F3;0.0105972!10485-107A8;0.00658219!10413-106B8;0.122796!10175-103C4;0.0402855!10161-103A8;0.135804!12131-128D7;0.0861005!10624-108H3;0.436111!10712-109I1;0.763749!10205-103F7;0.233115!10206-103F8;0.0153198!10207-103F9;0.0933934!10050-101G5;0.0146621!10051-101G6;0.0612136!10016-101C7;0.0214172!10046-101G1;0.0229595!10778-110G4;0.0252307!10633-108I3;0.247904!10818-111B8;0.0565911!10819-111B9;0.0944104!10820-111C1;0.0688319!10484-107A7;0.0866879!10808-111A7;0.492688!10169-103B7;0.430303!10153-102I9;0.411845!13425-144D5;0.267538!13433-144E4;0.00624292!13437-144E8;0.00212062!11904-125F5;0.0018981!11905-125F6;0.990477!10039-101F3;0.889267!10791-110H8;0.267092!10017-101C8;0.124731!10045-101F9;0.0688121!10509-107D5;0.071385!10839-111E2;0.2266!10692-109F8;0.113198!10079-102A7;0.0775675!10078-102A6;0.0237219!10721-110A1;0.0384143!10569-108B2;0.0501169!10570-108B3;0.296095!10571-108B4;0.179764!10647-109A8;0.533376!10752-110D5;0.00959016!10782-110G8;0.307894!10726-110A6;0.967284!10018-101C9;0.0174987!10086-102B5;0.0269304!10182-103D2;0.117833!10165-103B3;0.230621!10499-107C4;0.164185!10408-106B3;0.49131!10019-101D1;0.00247235!10068-101I5;0.0733604!10075-102A3;0.165743!10077-102A5;0.0459095!10727-110A7;0.029927!10775-110G1;0.8156!10412-106B7;0.394974!12231-129F8;0.123586!12232-129F9;0.449929!12233-129G1;0.256366!12234-129G2;0.278054!10414-106B9;0.583677!10170-103B8;0.0445223!10183-103D3;0.560075!10150-102I6;0.470814!10174-103C3;0.32115!10155-103A2;0.0808159!10038-101F2;0.0667476!10838-111E1;0.0750263!10759-110E3;0.0866808!10514-107E1;0.0292808!10465-106H6;0.0392978!10691-109F7;0.0762871!10843-111E6;0.163455!10844-111E7;0.196046!11747-123G1;0.337767!11748-123G2;0.981342!11749-123G3;0.664631!11750-123G4;0.516487!11751-123G5;0.188053!11840-124H4;0.273671!11752-123G6;0.131499!11753-123G7;0.181642!11754-123G8;0.142899!11755-123G9;0.673045!11756-123H1;0.874595!11833-124G6;0.257161!11760-123H5;0.782371!11836-124G9;0.600778!11758-123H3;0.0712182!11835-124G8;0.231375!11762-123H7;0.240188!11838-124H2;0.692185!11757-123H2;0.0359374!11759-123H4;0.49956!11761-123H6;0.511919!11842-124H6;0.218082!11837-124H1;0.320254!10568-108B1;0.26555!13230-141I8;0.455296!13231-141I9;0.0536519!10696-109G3;0.0595163!10493-107B7;0.168482!10494-107B8;0.0474186!10850-111F4;0.00778025!10851-111F5;0.001684!10852-111F6;0.349271!10853-111F7;0.304522!10854-111F8;0.0353426!10855-111F9;0.0340689!10856-111G1;0.0412164!10847-111F1;0.0337647!10846-111E9;0.581985!10848-111F2;0.0139081!10845-111E8;0.0303156!10857-111G2;0.0254894!10858-111G3;0.0736002!10156-103A3;0.382327!11901-125F2;0.286135!11902-125F3;0.747557!11903-125F4;0.430838!10689-109F5;0.27076!10648-109A9;0.223856!10784-110H1;0.0327628!10744-110C6;0.128974!10772-110F7;0.329607!10474-106I6;0.134546!10600-108E6;0.7065!10684-109E9;0.184863!12226-129F3;0.0260767!12227-129F4;0.127361!10508-107D4;0.388829!10539-107G8;0.34237!10607-108F4;0.157291!10555-107I6;0.0613753!10774-110F9;0.150488!10637-108I7;0.112559!10663-109C6;0.0489396!10728-110A8;0.0377428!10729-110A9;0.0354715!10430-106D7;0.332951!10730-110B1;0.255817!10813-111B3;0.0644323!10812-111B2;0.652637!10037-101F1;0.877547!10172-103C1;0.214756!10163-103B1;0.491347!10076-102A4;0.204321!10073-102A1;0.35897!10036-101E9;0.932356!10195-103E6;0.197188!10277-104E7;0.303268!10434-106E2;0.0462781!10550-107I1;0.12452!10545-107H5;0.043806!10544-107H4;0.0296472!10704-109H2;0.00615394!10510-107D6;0.763069!10558-107I9;0.0369805!10020-101D2;0.953669!10732-110B3;0.331722!10049-101G4;0.424355!10698-109G5;0.45797!10437-106E5;0.011634!10417-106C3;0.5738!10035-101E8;0.211166!10171-103B9;0.229806!10157-103A4;0.455716!10034-101E7;0.300937!10072-101I9;0.220665!10199-103F1;0.8259!10200-103F2;0.00552518!10697-109G4;0.0517097!10723-110A3;0.0565979!10179-103C8;0.0747403!10160-103A7;0.220739!10180-103C9;0.291757!10162-103A9;0.385295!10021-101D3;0.329091!10840-111E3;0.110408!10706-109H4;0.994745!10033-101E6;0.870752!10032-101E5;0.11797!10490-107B4;0.23295!10439-106E7;0.00556746!10022-101D4;0.123946!10176-103C5;0.212697!10469-106I1;0.443193!10067-101I4;0.193082!10411-106B6;0.477938!10471-106I3;0.683386!10030-101E3;0.502564!10475-106I7;0.132272!10787-110H4;0.0589109!10477-106I9;0.0180475!10695-109G2;0.205306!11771-123I7;0.887737!11772-123I8;0.0874796!11773-123I9;0.106656!10093-102C3;0.668114!10442-106F1;0.0043842!10442-106F1;0.0841612!10201-103F3;0.149741!10639-108I9;0.251451!11843-124H7;0.344853!11841-124H5;0.144825!10693-109F9;0.0201117!10436-106E4;0.221393!10483-107A6;0.273476!10282-104F3;0.11821!10023-101D5;0.0704763!10066-101I3;0.0559557!10065-101I2;0.101861!10800-110I8;0.0582811!10610-108F7;0.159474!10841-111E4;0.118801!10541-107H1;0.028156!10842-111E5;0.0406828!10562-108A4;0.0537016!10024-101D6;0.821842!10064-101I1;0.108779!10609-108F6;0.263186!10048-101G3;0.957427!10781-110G7;0.186134!10181-103D1;0.556126!10159-103A6;0.0762065!10056-101H2;0.0749482!10737-110B8;0.134831!10025-101D7;0.0787864!10044-101F8;0.0324943!10424-106D1;0.0334446!10463-106H4;0.439119!10616-108G4;0.0455032!10486-107A9;0.531124!10062-101H8;0.207571!10202-103F4;0.268885!10158-103A5;0.0112324!10441-106E9;0.0217137!10031-101E4;0.0259088!10063-101H9;0.197024!10063-101H9;0.960209!11763-123H8;0.162323!11765-123I1;0.597281!11768-123I4;0.670376!10807-111A6;0.746271!10790-110H7;0.00839295!10798-110I6;0.0108255!10786-110H3;0.0516931!10591-108D6;0.0269169!10593-108D8;0.00825904!10590-108D5;0.0103113!10026-101D8;0.0159867!10096-102C6;0.726129!10168-103B6;0.163021!10154-103A1;0.195045!10209-103G2;0.112591!10061-101H7;0.0277753!10027-101D9;0.0771711!10043-101F7;0.18895!10783-110G9;0.00816051!10028-101E1;0.267515!10060-101H6;0.16873!10203-103F5;0.0736048!10059-101H5;0.0358259!10047-101G2;0.0639989!10029-101E2;0.00706908!10058-101H4;0.0643378!10418-106C4;0.0569324!10492-107B6;0.0338617!10694-109G1;0.0308401!10797-110I5;0.412059!10057-101H3;0.578597!10100-102D1;0.0980303!10055-101H1;0.407422!10204-103F6;0.362177!10191-103E2;0.109817!10563-108A5;0.0227491
|name=motif_TGNCAC
|name=motif_TGNCAC
|tomtom_result=CUP9#MA0288.1;0;0.00141831;0.675117;0.988359;6;TGACAC;TGACACATT;+!Six4#MA0204.1;0;0.00207638;0.988359;0.988359;6;TGACAC;TGATAC;+!vis#MA0252.1;0;0.00402148;1.91423;1;6;TGACAC;TGACAG;+!TLX1::NFIC#MA0119.1;0;0.00732824;3.48824;1;6;TGACAC;TGGCACCATGCCAA;+!Pax2#MA0067.1;0;0.0109214;5.19858;1;6;TGACAC;AGTCACGG;+!achi#MA0207.1;1;0.0155866;7.41923;1;5;TGACAC;CTGTCA;-!TOS8#MA0408.1;2;0.0166828;7.94103;1;6;TGACAC;TTTGACAG;-!hth#MA0227.1;1;0.016889;8.03915;1;5;TGACAC;CTGTCA;-!h#MA0449.1;-1;0.0177735;8.46018;1;5;TGACAC;GGCACGTGCC;+
}}
}}

Latest revision as of 12:22, 7 September 2012

Full Name: motif_TGNCAC

Motif matrix
POACGT
0100017376
0200173760
034344434443444344
0401737600
0517376000
0601737600

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
CUP9#MA0288.100.001418310.6751170.9883596TGACACTGACACATT+
Six4#MA0204.100.002076380.9883590.9883596TGACACTGATAC+
vis#MA0252.100.004021481.9142316TGACACTGACAG+
TLX1::NFIC#MA0119.100.007328243.4882416TGACACTGGCACCATGCCAA+
Pax2#MA0067.100.01092145.1985816TGACACAGTCACGG+
achi#MA0207.110.01558667.4192315TGACACCTGTCA-
TOS8#MA0408.120.01668287.9410316TGACACTTTGACAG-
hth#MA0227.110.0168898.0391515TGACACCTGTCA-
h#MA0449.1-10.01777358.4601815TGACACGGCACGTGCC+
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