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MacroAPE 1083:POU5F1 mES-Oct4-ChIP-Seq/Homer: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;5793;326;326;353!2;7;7;7;6777!3;7;292;7;6492!4;1054;7;7;5730!5;727;7;6057;7!6;54;6730;7;7!7;6777;7;7;7!8;7;27;7;6757!9;4595;320;850;1033!10;...")
 
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597-108E3;0.750093!10717-109I6;0.0650658!10455-106G5;0.00438923!10534-107G3;0.0076856!10429-106D6;0.125349!10464-106H5;0.604667!10827-111C8;0.691704!10789-110H6;0.824099!10828-111C9;0.233654!10788-110H5;0.36208!10792-110H9;0.977307!10765-110E9;0.312258!10829-111D1;0.484036!10830-111D2;0.856334!10831-111D3;0.929836!10832-111D4;0.942791!10833-111D5;0.095898!10764-110E8;0.564516!10770-110F5;0.276873!10399-106A3;0.661453!10400-106A4;0.821362!10405-106A9;0.785274!10834-111D6;0.922202!10835-111D7;0.883556!10836-111D8;0.806367!10837-111D9;0.352604!10699-109G6;0.924337!10802-111A1;0.880066!10796-110I4;0.884084!10010-101C1;0.780445!10810-111A9;0.00951429!10421-106C7;0.613641!10708-109H6;0.105059!12235-129G3;0.833753!12236-129G4;0.651195!12237-129G5;0.216689!10167-103B5;0.490686!10151-102I7;0.848373!10428-106D5;0.780979!10795-110I3;0.768969!10805-111A4;0.146674!10052-101G7;0.280398!10189-103D9;0.15437!10589-108D4;0.00501915!10425-106D2;0.86719!10427-106D4;0.885433!10702-109G9;0.0192522!10432-106D9;0.135191!10496-107C1;0.925975!10718-109I7;0.2658!10011-101C2;0.162999!10053-101G8;0.460169!10686-109F2;0.258194!10084-102B3;0.274376!10012-101C3;0.81891!10085-102B4;0.855363!10482-107A5;0.572411!10419-106C5;0.463193!10080-102A8;0.74656!10760-110E4;0.701866!10709-109H7;0.927656!10710-109H8;0.154694!10703-109H1;0.0099151!10719-109I8;0.0896724!10642-109A3;0.00957059!10177-103C6;0.918544!10164-103B2;0.679316!10173-103C2;0.396535!10166-103B4;0.709692!10083-102B2;0.910283!10188-103D8;0.929308!10552-107I3;0.783155!10553-107I4;0.737095!10013-101C4;0.979969!10536-107G5;0.721183!10618-108G6;0.142949!10423-106C9;0.338841!10785-110H2;0.57472!12238-129G6;0.277411!12239-129G7;0.436438!12240-129G8;0.709975!10416-106C2;0.718927!10801-110I9;0.968467!10766-110F1;0.860081!10824-111C5;0.662918!10825-111C6;0.0180428!10826-111C7;0.02558!10454-106G4;0.0376415!10409-106B4;0.302348!10638-108I8;0.966889!10636-108I6;0.424162!10513-107D9;0.0767413!10420-106C6;0.0606844!10082-102B1;0.579297!10014-101C5;0.116943!10070-101I7;0.311626!10452-106G2;0.271707!10453-106G3;0.00652074!10449-106F8;0.0432917!10042-101F6;0.0510436!10069-101I6;0.654689!10193-103E4;0.0210393!10631-108I1;0.548403!10438-106E6;0.0184058!10488-107B2;0.395451!10196-103E7;0.488957!10071-101I8;0.928909!10071-101I8;0.972697!10041-101F5;0.388647!10451-106G1;0.591357!10450-106F9;0.21618!10604-108F1;0.960181!10605-108F2;0.837055!10606-108F3;0.604233!10603-108E9;0.751675!10497-107C2;0.892957!10448-106F7;0.781524!10643-109A4;0.0586097!10426-106D3;0.67189!10431-106D8;0.117112!10197-103E8;0.0915152!10443-106F2;0.145978!10815-111B5;0.423237!10816-111B6;0.483887!10817-111B7;0.201323!10015-101C6;0.621655!10410-106B5;0.248108!10054-101G9;0.835032!10758-110E2;0.696775!10711-109H9;0.361455!10040-101F4;0.173509!10470-106I2;0.481133!10415-106C1;0.00904581!10198-103E9;0.412742!10614-108G2;0.663609!10612-108F9;0.768684!10549-107H9;0.0188666!10615-108G3;0.955075!10487-107B1;0.435292!10433-106E1;0.729341!10688-109F4;0.09003!10444-106F3;0.810279!10444-106F3;0.539119!10485-107A8;0.517787!10413-106B8;0.550133!10175-103C4;0.00173085!10161-103A8;0.487143!12131-128D7;0.419472!10624-108H3;0.491334!10712-109I1;0.625178!10205-103F7;0.0801399!10206-103F8;0.00381203!10207-103F9;0.00355996!10050-101G5;0.132038!10051-101G6;0.74685!10016-101C7;0.0242164!10046-101G1;0.0335864!10778-110G4;0.093148!10633-108I3;0.557031!10818-111B8;0.0646734!10819-111B9;0.459657!10820-111C1;0.43776!10484-107A7;0.474432!10808-111A7;0.500885!10169-103B7;0.068378!10153-102I9;0.577648!13425-144D5;0.765912!13433-144E4;1.77617e-07!13437-144E8;6.23077e-08!11904-125F5;1.40555e-06!11905-125F6;0.487549!10039-101F3;0.0401145!10791-110H8;0.635387!10017-101C8;0.813346!10045-101F9;0.538229!10509-107D5;0.126757!10839-111E2;0.0640508!10692-109F8;0.654067!10079-102A7;0.258238!10078-102A6;0.00813531!10721-110A1;0.0158588!10569-108B2;0.543829!10570-108B3;0.00795939!10571-108B4;0.0562325!10647-109A8;0.0569001!10752-110D5;0.860593!10782-110G8;0.219997!10726-110A6;0.00765116!10018-101C9;0.728439!10086-102B5;3.19302e-05!10182-103D2;0.561753!10165-103B3;0.997598!10499-107C4;0.716984!10408-106B3;0.432036!10019-101D1;0.995543!10068-101I5;0.00535748!10075-102A3;0.59075!10077-102A5;0.195316!10727-110A7;0.0137325!10775-110G1;0.0196362!10412-106B7;0.00795613!12231-129F8;0.325373!12232-129F9;0.0347862!12233-129G1;0.0017882!12234-129G2;0.00735451!10414-106B9;0.000839314!10170-103B8;0.12933!10183-103D3;0.367545!10150-102I6;0.754649!10174-103C3;0.905577!10155-103A2;0.782356!10038-101F2;0.915453!10838-111E1;0.928055!10759-110E3;0.867993!10514-107E1;0.0955381!10465-106H6;0.130242!10691-109F7;0.0257225!10843-111E6;0.911737!10844-111E7;0.0191055!11747-123G1;0.0658004!11748-123G2;0.00566777!11749-123G3;0.0335556!11750-123G4;0.00185587!11751-123G5;0.000329307!11840-124H4;0.000262063!11752-123G6;0.002261!11753-123G7;0.0024833!11754-123G8;0.000639774!11755-123G9;0.0154958!11756-123H1;0.493818!11833-124G6;0.109515!11760-123H5;0.0468286!11836-124G9;0.411293!11758-123H3;0.00830089!11835-124G8;0.00973991!11762-123H7;0.496837!11838-124H2;0.250889!11757-123H2;0.0536958!11759-123H4;0.00281861!11761-123H6;0.0520159!11842-124H6;0.176424!11837-124H1;0.128016!10568-108B1;0.56016!13230-141I8;0.0117383!13231-141I9;0.0533645!10696-109G3;0.015!10493-107B7;0.181761!10494-107B8;0.484329!10850-111F4;0.665786!10851-111F5;0.11025!10852-111F6;0.836734!10853-111F7;0.682298!10854-111F8;0.12834!10855-111F9;0.742365!10856-111G1;0.0696514!10847-111F1;0.959751!10846-111E9;0.762276!10848-111F2;0.801989!10845-111E8;0.859458!10857-111G2;0.5341!10858-111G3;0.802071!10156-103A3;0.233452!11901-125F2;0.762987!11902-125F3;0.0986737!11903-125F4;0.451899!10689-109F5;0.659592!10648-109A9;0.546115!10784-110H1;0.834968!10744-110C6;0.239358!10772-110F7;0.172453!10474-106I6;0.316557!10600-108E6;0.178985!10684-109E9;0.540944!12226-129F3;0.39565!12227-129F4;0.318486!10508-107D4;0.031226!10539-107G8;0.923757!10607-108F4;0.734603!10555-107I6;0.168301!10774-110F9;0.748486!10637-108I7;0.757014!10663-109C6;0.0734199!10728-110A8;0.121023!10729-110A9;0.0421135!10430-106D7;0.347073!10730-110B1;0.280057!10813-111B3;0.947704!10812-111B2;0.184232!10037-101F1;0.184316!10172-103C1;0.460287!10163-103B1;0.517138!10076-102A4;0.971086!10073-102A1;0.620813!10036-101E9;0.500878!10195-103E6;0.774217!10277-104E7;0.597118!10434-106E2;0.0436964!10550-107I1;0.822997!10545-107H5;0.198907!10544-107H4;0.196678!10704-109H2;0.222184!10510-107D6;0.552126!10558-107I9;0.0394141!10020-101D2;0.00948057!10732-110B3;0.351693!10049-101G4;0.477941!10698-109G5;0.491789!10437-106E5;0.545866!10417-106C3;0.117165!10035-101E8;0.784207!10171-103B9;0.577421!10157-103A4;0.593085!10034-101E7;0.799578!10072-101I9;0.523334!10199-103F1;0.440103!10200-103F2;0.085599!10697-109G4;0.116538!10723-110A3;0.737865!10179-103C8;0.425767!10160-103A7;0.958739!10180-103C9;0.584984!10162-103A9;0.0156977!10021-101D3;0.0230984!10840-111E3;0.534805!10706-109H4;0.0207517!10033-101E6;0.149799!10032-101E5;0.515692!10490-107B4;0.75568!10439-106E7;0.694976!10022-101D4;0.712067!10176-103C5;0.7382!10469-106I1;0.494258!10067-101I4;0.0835047!10411-106B6;0.359336!10471-106I3;0.887098!10030-101E3;0.0868748!10475-106I7;0.530476!10787-110H4;0.594907!10477-106I9;0.366684!10695-109G2;0.329724!11771-123I7;0.384934!11772-123I8;0.556167!11773-123I9;0.952513!10093-102C3;0.53372!10442-106F1;0.35045!10442-106F1;0.26142!10201-103F3;0.315531!10639-108I9;0.856295!11843-124H7;0.263671!11841-124H5;0.443822!10693-109F9;0.996112!10436-106E4;0.199428!10483-107A6;0.161297!10282-104F3;0.788391!10023-101D5;0.000344113!10066-101I3;0.00803516!10065-101I2;0.308125!10800-110I8;0.166488!10610-108F7;0.257299!10841-111E4;0.783432!10541-107H1;0.74195!10842-111E5;0.0897517!10562-108A4;0.261969!10024-101D6;0.919998!10064-101I1;0.415644!10609-108F6;0.294364!10048-101G3;0.378391!10781-110G7;0.0520473!10181-103D1;0.857127!10159-103A6;0.463495!10056-101H2;0.863288!10737-110B8;0.985843!10025-101D7;0.574953!10044-101F8;0.0164448!10424-106D1;0.00595733!10463-106H4;0.0763226!10616-108G4;0.395716!10486-107A9;0.793761!10062-101H8;0.0374515!10202-103F4;0.397037!10158-103A5;0.830061!10441-106E9;0.44585!10031-101E4;0.490439!10063-101H9;0.734819!10063-101H9;0.472955!11763-123H8;0.450054!11765-123I1;0.109007!11768-123I4;0.117453!10807-111A6;0.0145633!10790-110H7;0.00055821!10798-110I6;0.013742!10786-110H3;0.386569!10591-108D6;0.0223331!10593-108D8;0.010164!10590-108D5;0.165633!10026-101D8;0.0325774!10096-102C6;0.497788!10168-103B6;0.761728!10154-103A1;0.970756!10209-103G2;0.567038!10061-101H7;0.660763!10027-101D9;0.151985!10043-101F7;0.00285448!10783-110G9;0.000971196!10028-101E1;0.315759!10060-101H6;0.000246878!10203-103F5;0.000273161!10059-101H5;0.431379!10047-101G2;0.0702757!10029-101E2;0.00793206!10058-101H4;0.124332!10418-106C4;0.384666!10492-107B6;0.408094!10694-109G1;0.609072!10797-110I5;0.813824!10057-101H3;0.47147!10100-102D1;0.331104!10055-101H1;0.0661306!10204-103F6;0.774511!10191-103E2;0.105637!10563-108A5;0.0161632
|name=POU5F1_mES-Oct4-ChIP-Seq/Homer
|name=POU5F1_mES-Oct4-ChIP-Seq/Homer
|tomtom_result=Pou5f1#MA0142.1;0;3.04706e-07;0.00014504;0.0002897;10;ATTTGCATAA;ATTTGCATAACAAAG;-!nub#MA0453.1;3;1.25e-06;0.000595001;0.000594222;9;ATTTGCATAA;CTAATTTGCATA;-!Sox2#MA0143.1;-1;0.000337835;0.160809;0.107066;9;ATTTGCATAA;TTTGCATAACAAAGG;-!ARR1#MA0274.1;0;0.00165615;0.788325;0.377786;8;ATTTGCATAA;ACTTGAAT;+!vvl#MA0254.1;-3;0.00198677;0.945704;0.377786;6;ATTTGCATAA;TGCATA;-!fkh#MA0446.1;1;0.00291706;1.38852;0.462234;10;ATTTGCATAA;TGTTTGCTTAA;+!MATALPHA2#MA0328.1;0;0.00622443;2.96283;0.845415;9;ATTTGCATAA;AATTACATG;-!CG11617#MA0173.1;-1;0.00733653;3.49219;0.871904;7;ATTTGCATAA;TTAACAT;+!squamosa#MA0082.1;0;0.0089069;4.23968;0.892364;10;ATTTGCATAA;ATTTCCATTTTTGG;-!FOXL1#MA0033.1;-1;0.00938585;4.46767;0.892364;8;ATTTGCATAA;TATACATA;+!FOXA1#MA0148.1;1;0.0166303;7.91604;0.998691;10;ATTTGCATAA;TGTTTACTTTG;+!HMRA2#MA0318.1;-1;0.0185811;8.8446;0.998691;8;ATTTGCATAA;ATTACATG;-!Foxa2#MA0047.2;1;0.0206702;9.83901;0.998691;10;ATTTGCATAA;TGTTTACTTAGG;+
}}
}}

Latest revision as of 12:21, 7 September 2012

Full Name: POU5F1_mES-Oct4-ChIP-Seq/Homer

Motif matrix
POACGT
15793326326353
27776777
3729276492
41054775730
5727760577
654673077
76777777
872776757
945953208501033
1029517274282692

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Pou5f1#MA0142.103.04706e-070.000145040.000289710ATTTGCATAAATTTGCATAACAAAG-
nub#MA0453.131.25e-060.0005950010.0005942229ATTTGCATAACTAATTTGCATA-
Sox2#MA0143.1-10.0003378350.1608090.1070669ATTTGCATAATTTGCATAACAAAGG-
ARR1#MA0274.100.001656150.7883250.3777868ATTTGCATAAACTTGAAT+
vvl#MA0254.1-30.001986770.9457040.3777866ATTTGCATAATGCATA-
fkh#MA0446.110.002917061.388520.46223410ATTTGCATAATGTTTGCTTAA+
MATALPHA2#MA0328.100.006224432.962830.8454159ATTTGCATAAAATTACATG-
CG11617#MA0173.1-10.007336533.492190.8719047ATTTGCATAATTAACAT+
squamosa#MA0082.100.00890694.239680.89236410ATTTGCATAAATTTCCATTTTTGG-
FOXL1#MA0033.1-10.009385854.467670.8923648ATTTGCATAATATACATA+
FOXA1#MA0148.110.01663037.916040.99869110ATTTGCATAATGTTTACTTTG+
HMRA2#MA0318.1-10.01858118.84460.9986918ATTTGCATAAATTACATG-
Foxa2#MA0047.210.02067029.839010.99869110ATTTGCATAATGTTTACTTAGG+
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