Personal tools

Data source: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
Line 86: Line 86:
** hg19: https://fantom5-collaboration.gsc.riken.jp/webdav/home/seb/FREEZE_PHASE1/cluster_classify/tc.decompose_smoothing_merged.permissive_peaks_pos.bed.gz
** hg19: https://fantom5-collaboration.gsc.riken.jp/webdav/home/seb/FREEZE_PHASE1/cluster_classify/tc.decompose_smoothing_merged.permissive_peaks_pos.bed.gz
** mm9: https://fantom5-collaboration.gsc.riken.jp/webdav/home/seb/FREEZE_PHASE1/cluster_classify/mm9.permissive_dpi_cluster.pos.bed.gz
** mm9: https://fantom5-collaboration.gsc.riken.jp/webdav/home/seb/FREEZE_PHASE1/cluster_classify/mm9.permissive_dpi_cluster.pos.bed.gz
* T. Lassmann tss-like classifier (score):
** hg19: https://fantom5-collaboration.gsc.riken.jp/webdav/home/Lassmann/TSS_classification/Final/TSS_human.bed.gz
** mm9: https://fantom5-collaboration.gsc.riken.jp/webdav/home/Lassmann/TSS_classification/Final/TSS_mouse.bed.gz


=== CAGE peak expression (for the ones with the robust threshold) ===
=== CAGE peak expression (for the ones with the robust threshold) ===

Revision as of 17:23, 3 July 2012

Data sources used in the database(s)


old info on the top page


FANTOM5 Resource Browser

CAGE peaks

Co expression cluster

Gene

Motifs

Sample information

Ontology

Network

FANTOM5 BioMart

CAGE peak annotation (for the ones with the permissive threshold)

CAGE peak expression (for the ones with the robust threshold)