UBERON:0005284: Difference between revisions
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0000955 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:39, 27 June 2012
| Name: | brain vasculature | ||
|---|---|---|---|
| Definition: | "A vasculature that is part of a brain [Obol]." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Synonyms: | "vasculature of brain" EXACT [FMA:242007] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004121(ectoderm-derived structure),UBERON:0006876(vasculature of organ) |
|---|---|
| part_of: | UBERON:0000955(brain) |
Children
| part of: | CL:0002590 (smooth muscle cell of the brain vasculature) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11234-116D1 (Smooth Muscle Cells - Brain Vascular, donor1)
- 11315-117D1 (Smooth Muscle Cells - Brain Vascular, donor2)
- 11391-118C5 (Smooth Muscle Cells - Brain Vascular, donor3)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005284 (brain vasculature), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_ffd3dea9a43079bc317ec4fd54a7d4c3 | p58@NAV1 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_ffd3dea9a43079bc317ec4fd54a7d4c3 | p58@NAV1 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_ffd3dea9a43079bc317ec4fd54a7d4c3 | p55@NAV1 |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_ffd3dea9a43079bc317ec4fd54a7d4c3 | p55@NAV1 |
| 1.35e-59 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_fa1dd048e0fb727f9e18fc7ea7bb1b1d | p@chr3:146517344..146517356, + |
| 1.35e-59 | FFCP PHASE2:Hg19::chr8:128902571..128902583,+#_fa1dd048e0fb727f9e18fc7ea7bb1b1d | p15@PVT1 |
| 1.35e-59 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_fa1dd048e0fb727f9e18fc7ea7bb1b1d | p@chr3:146517344..146517356, + |
| 1.35e-59 | FFCP PHASE1:Hg19::chr8:128902571..128902583,+#_fa1dd048e0fb727f9e18fc7ea7bb1b1d | p15@PVT1 |
| 1.16e-57 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_00332a1483dc206f79ac0b05d56000cf | p20@RIMS1 |
| 1.16e-57 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_00332a1483dc206f79ac0b05d56000cf | p20@RIMS1 |
| 2.87e-53 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_d6095e4e02363ac8ed279ebd63e20e9f | p@chr8:24997361..24997368, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_d6095e4e02363ac8ed279ebd63e20e9f | p@chr8:24997361..24997368, - |
| 2.98e-45 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_325c3f8c602182a540b98d6924225086 | p7@OBFC1 |
| 2.98e-45 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_325c3f8c602182a540b98d6924225086 | p7@OBFC1 |
| 4.35e-40 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_166df9a8c1cb0c9163c7c18542e89f48 | p20@EBF1 |
| 4.35e-40 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_166df9a8c1cb0c9163c7c18542e89f48 | p20@EBF1 |
| 2.26e-36 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_dae9454ae191acc128f6f0ad66d406dd | p7@METTL11A |
| 2.26e-36 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_dae9454ae191acc128f6f0ad66d406dd | p7@METTL11A |
| 6.73e-36 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_ee669761cb68a75bad17fa08d20cc13b | p@chr11:60640905..60640919, + |
| 6.73e-36 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_ee669761cb68a75bad17fa08d20cc13b | p@chr11:60640905..60640919, + |
| 6.54e-34 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_307e449deee8f136c818cf5af157ba38 | p6@CCDC86 |
| 6.54e-34 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_307e449deee8f136c818cf5af157ba38 | p6@CCDC86 |
| 6.26e-33 | FFCP PHASE2:Hg19::chr12:15942091..15942108,-#_40e7887ed7b0201cdf247278bce94c43 | p13@EPS8 |
| 6.26e-33 | FFCP PHASE1:Hg19::chr12:15942091..15942108,-#_40e7887ed7b0201cdf247278bce94c43 | p13@EPS8 |
| 1.15e-32 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_6ce8eee7a2550994f213caba8e26a4d4 | p@chr1:236203048..236203055, - |
| 1.15e-32 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_6ce8eee7a2550994f213caba8e26a4d4 | p@chr1:236203048..236203055, - |
| 1.43e-32 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_f98c3d9f191cec7c1fc0ede9a0312c1c | p30@PRKCH |
| 1.43e-32 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_f98c3d9f191cec7c1fc0ede9a0312c1c | p30@PRKCH |
| 1.59e-32 | FFCP PHASE1:Hg19::chr6:72970389..72970411,+#_198db5c0c26483699a3b58d4d8d64903 | p6@RIMS1 |
| 1.59e-32 | FFCP PHASE2:Hg19::chr6:72970389..72970411,+#_198db5c0c26483699a3b58d4d8d64903 | p6@RIMS1 |
| 2.34e-32 | FFCP PHASE2:Hg19::chr11:60680219..60680235,+#_4d6d26b58c350bf42b13f27ab9648ce3 | p@chr11:60680219..60680235, + |
| 2.34e-32 | FFCP PHASE1:Hg19::chr11:60680219..60680235,+#_4d6d26b58c350bf42b13f27ab9648ce3 | p@chr11:60680219..60680235, + |
| 4.9e-31 | FFCP PHASE2:Hg19::chr6:35656232..35656237,-#_d934d9098d9112e2beca177f0e52ab66 | p@chr6:35656232..35656237, - |
| 4.9e-31 | FFCP PHASE1:Hg19::chr6:35656232..35656237,-#_d934d9098d9112e2beca177f0e52ab66 | p@chr6:35656232..35656237, - |
| 3.66e-28 | FFCP PHASE2:Hg19::chr6:72970412..72970435,+#_3887ec02605c2470d2e2fab42cd64389 | p11@RIMS1 |
| 3.66e-28 | FFCP PHASE1:Hg19::chr6:72970412..72970435,+#_3887ec02605c2470d2e2fab42cd64389 | p11@RIMS1 |
| 5.82e-28 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_f8027ba052a4aa2dedd0fa1332545d36 | p3@AB464362 |
| 5.82e-28 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_f8027ba052a4aa2dedd0fa1332545d36 | p3@AB464362 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_5db76fe47bd85abcf3ab6f9d3d696553 | p73@SEPT9 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr5:149532703..149532711,+#_5db76fe47bd85abcf3ab6f9d3d696553 | p@chr5:149532703..149532711, + |
| 3.11e-27 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_5db76fe47bd85abcf3ab6f9d3d696553 | p73@SEPT9 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr5:149532703..149532711,+#_5db76fe47bd85abcf3ab6f9d3d696553 | p@chr5:149532703..149532711, + |
| 1.98e-26 | FFCP PHASE2:Hg19::chrX:31284990..31284993,-#_bc3b8df2e67b772d2bebe503308c9132 | p17@DMD |
| 1.98e-26 | FFCP PHASE1:Hg19::chrX:31284990..31284993,-#_bc3b8df2e67b772d2bebe503308c9132 | p17@DMD |
| 4.67e-24 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_c0acf4ce17ad4513ffe314152a9af5d0 | p6@ZIC4 |
| 4.67e-24 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_c0acf4ce17ad4513ffe314152a9af5d0 | p6@ZIC4 |
| 1.44e-23 | FFCP PHASE1:Hg19::chr3:147128048..147128057,+#_4bfca8b9fe1f0a3b1c82af3ab5fa0d8e | p4@AB464362 |
| 1.44e-23 | FFCP PHASE2:Hg19::chr3:147128048..147128057,+#_4bfca8b9fe1f0a3b1c82af3ab5fa0d8e | p4@AB464362 |
| 1.44e-23 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_4bfca8b9fe1f0a3b1c82af3ab5fa0d8e | p@chr12:15941738..15941768, + |
| 1.44e-23 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_4bfca8b9fe1f0a3b1c82af3ab5fa0d8e | p@chr12:15941738..15941768, + |
| 1.51e-23 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_b9e12fd51d578c3249d4e86e8a71bd00 | p@chr2:238066183..238066194, - |
| 1.51e-23 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_b9e12fd51d578c3249d4e86e8a71bd00 | p@chr2:238066183..238066194, - |
| 1.61e-23 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_27aef1055d81e4cdb64e9002292a2ea1 | p@chr5:149537789..149537803, - |
| 1.61e-23 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_27aef1055d81e4cdb64e9002292a2ea1 | p@chr5:149537789..149537803, - |
| 6.34e-23 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_4fab3121f9bf1ef0fb0d638cee431960 | p@chr12:279773..279812, + |
| 6.34e-23 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_4fab3121f9bf1ef0fb0d638cee431960 | p@chr12:279773..279812, + |
| 6.83e-23 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_6b1748f7a2b2812a626ac91737d3a014 | p@chr3:147112699..147112713, - |
| 6.83e-23 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_6b1748f7a2b2812a626ac91737d3a014 | p@chr3:147112699..147112713, - |
| 1.09e-22 | FFCP PHASE1:Hg19::chr3:147127489..147127503,+#_fbb302d93e1e2ed632408907a0164db9 | p11@ZIC1 |
| 1.09e-22 | FFCP PHASE2:Hg19::chr3:147127489..147127503,+#_fbb302d93e1e2ed632408907a0164db9 | p11@ZIC1 |
| 1.24e-22 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_f403097f47d212ef3abb4bba05899951 | p16@ZIC1 |
| 1.24e-22 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_f403097f47d212ef3abb4bba05899951 | p16@ZIC1 |
| 1.11e-21 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_c70c00363ffd709da4789d1b6b6de9d7 | p@chr3:147088197..147088208, - |
| 1.11e-21 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_c70c00363ffd709da4789d1b6b6de9d7 | p@chr3:147088197..147088208, - |
| 1.59e-21 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_0c8ef70d56fc386ac02f13412e218cd1 | p@chr17:1013251..1013277, - |
| 1.59e-21 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_0c8ef70d56fc386ac02f13412e218cd1 | p@chr17:1013251..1013277, - |
| 4.92e-21 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_93f352a6b1296f0a0afca3005ddbbaa0 | p7@FLVCR2 |
| 4.92e-21 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_93f352a6b1296f0a0afca3005ddbbaa0 | p7@FLVCR2 |
| 8.13e-21 | FFCP PHASE2:Hg19::chr6:94508854..94508876,-#_b16d3d3dc482ab96a85a832048a2e20e | p@chr6:94508854..94508876, - |
| 8.13e-21 | FFCP PHASE1:Hg19::chr6:94508854..94508876,-#_b16d3d3dc482ab96a85a832048a2e20e | p@chr6:94508854..94508876, - |
| 9.93e-21 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_0b3c8a95ef8d323e9023f93e7c8f8d26 | p@chr16:65159735..65159744, - |
| 9.93e-21 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_0b3c8a95ef8d323e9023f93e7c8f8d26 | p@chr16:65159735..65159744, - |
| 1.1e-20 | FFCP PHASE1:Hg19::chr3:147141109..147141123,-#_1340e549ed7593acb79bfea42444c322 | p@chr3:147141109..147141123, - |
| 1.1e-20 | FFCP PHASE2:Hg19::chr3:147141109..147141123,-#_1340e549ed7593acb79bfea42444c322 | p@chr3:147141109..147141123, - |
| 1.11e-20 | FFCP PHASE1:Hg19::chr3:79817162..79817175,-#_e3d60983ea90e54cc32722d7573099ef | p6@ROBO1 |
| 1.11e-20 | FFCP PHASE2:Hg19::chr3:79817162..79817175,-#_e3d60983ea90e54cc32722d7573099ef | p6@ROBO1 |
| 2.65e-20 | FFCP PHASE1:Hg19::chr5:30104120..30104173,-#_a34ef39421152b01d3c46e4d208a15ee | p@chr5:30104120..30104173, - |
| 2.65e-20 | FFCP PHASE2:Hg19::chr5:30104120..30104173,-#_a34ef39421152b01d3c46e4d208a15ee | p@chr5:30104120..30104173, - |
| 4.41e-20 | FFCP PHASE1:Hg19::chr3:147124697..147124729,+#_25acdd92304b26c4cbd686c327db6d58 | p@chr3:147124697..147124729, + |
| 4.41e-20 | FFCP PHASE2:Hg19::chr3:147124697..147124729,+#_25acdd92304b26c4cbd686c327db6d58 | p@chr3:147124697..147124729, + |
| 2.78e-19 | FFCP PHASE1:Hg19::chr3:147111317..147111328,+#_276d72bb317f1a631d3243ce620f722d | p8@ZIC1 |
| 2.78e-19 | FFCP PHASE2:Hg19::chr3:147111317..147111328,+#_276d72bb317f1a631d3243ce620f722d | p8@ZIC1 |
| 5.62e-19 | FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_f6cf0a3c4a1569760ac9e7253fd547c8 | p@chr4:152090554..152090566, + |
| 5.62e-19 | FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_f6cf0a3c4a1569760ac9e7253fd547c8 | p@chr4:152090554..152090566, + |
| 6.4e-19 | FFCP PHASE1:Hg19::chr11:111685389..111685410,-#_956ecee8851c9825dde09a27494f3f42 | p7@ALG9 |
| 6.4e-19 | FFCP PHASE2:Hg19::chr11:111685389..111685410,-#_956ecee8851c9825dde09a27494f3f42 | p7@ALG9 |
| 1.31e-18 | FFCP PHASE2:Hg19::chr11:60640875..60640891,+#_015c0c9abced127f3a74253044089f24 | p@chr11:60640875..60640891, + |
| 1.31e-18 | FFCP PHASE1:Hg19::chr11:60640875..60640891,+#_015c0c9abced127f3a74253044089f24 | p@chr11:60640875..60640891, + |
| 1.35e-18 | FFCP PHASE1:Hg19::chr17:48346424..48346435,+#_e262cc7375cf60b8a38e2cd682216371 | p@chr17:48346424..48346435, + |
| 1.35e-18 | FFCP PHASE2:Hg19::chr17:48346424..48346435,+#_e262cc7375cf60b8a38e2cd682216371 | p@chr17:48346424..48346435, + |
| 1.62e-18 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_382b49c2a229169f0fbcbca623fb3383 | p@chr11:60680190..60680212, + |
| 1.62e-18 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_382b49c2a229169f0fbcbca623fb3383 | p@chr11:60680190..60680212, + |
| 1.77e-18 | FFCP PHASE2:Hg19::chr11:73020686..73020697,+#_44b3ecb5c21da197d334e6b3b53038ea | p23@ARHGEF17 |
| 1.77e-18 | FFCP PHASE1:Hg19::chr11:73020686..73020697,+#_44b3ecb5c21da197d334e6b3b53038ea | p23@ARHGEF17 |
| 2.11e-18 | FFCP PHASE1:Hg19::chr3:147139152..147139163,+#_1029558b3e3f4016d04b1f32ed9b9735 | p15@ZIC1 |
| 2.11e-18 | FFCP PHASE2:Hg19::chr3:147139152..147139163,+#_1029558b3e3f4016d04b1f32ed9b9735 | p15@ZIC1 |
| 4.71e-18 | FFCP PHASE1:Hg19::chr3:147131841..147131863,+#_a4d4b48c923b706ced617bd51e2a9775 | p@chr3:147131841..147131863, + |
| 4.71e-18 | FFCP PHASE2:Hg19::chr3:147131841..147131863,+#_a4d4b48c923b706ced617bd51e2a9775 | p@chr3:147131841..147131863, + |
| 8.03e-18 | FFCP PHASE1:Hg19::chr3:147111285..147111298,+#_9318f09aaf4a6af9d0b8552f64048903 | p10@ZIC1 |
| 8.03e-18 | FFCP PHASE2:Hg19::chr3:147111285..147111298,+#_9318f09aaf4a6af9d0b8552f64048903 | p10@ZIC1 |
