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|part_of=UBERON:0001894
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
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Revision as of 13:32, 27 June 2012

Name:regional part of diencephalon
Definition:"A regional part of brain that is part of a diencephalon [Obol]." [OBOL:automatic]
Xrefs:
links:

FMA:62005

NIF_GrossAnatomy:birnlex_1685
Synonyms: "anatomical structure of brain of between brain" EXACT [OBOL:automatic]
"anatomical structure of brain of diencephalon" EXACT [OBOL:automatic]
"anatomical structure of brain of interbrain" EXACT [OBOL:automatic]
"anatomical structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"between brain anatomical structure of brain" EXACT [OBOL:automatic]
"between brain biological structure of brain" EXACT [OBOL:automatic]
"between brain brain anatomical structure" EXACT [OBOL:automatic]
"between brain brain biological structure" EXACT [OBOL:automatic]
"between brain neuraxis segment" EXACT [OBOL:automatic]
"between brain regional part of brain" EXACT [OBOL:automatic]
"between brain segment of brain" EXACT [OBOL:automatic]
"biological structure of brain of between brain" EXACT [OBOL:automatic]
"biological structure of brain of diencephalon" EXACT [OBOL:automatic]
"biological structure of brain of interbrain" EXACT [OBOL:automatic]
"biological structure of brain of mature diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of between brain" EXACT [OBOL:automatic]
"brain anatomical structure of diencephalon" EXACT [OBOL:automatic]
"brain anatomical structure of interbrain" EXACT [OBOL:automatic]
"brain anatomical structure of mature diencephalon" EXACT [OBOL:automatic]
"brain biological structure of between brain" EXACT [OBOL:automatic]
"brain biological structure of diencephalon" EXACT [OBOL:automatic]
"brain biological structure of interbrain" EXACT [OBOL:automatic]
"brain biological structure of mature diencephalon" EXACT [OBOL:automatic]
"diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"diencephalon biological structure of brain" EXACT [OBOL:automatic]
"diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"diencephalon brain biological structure" EXACT [OBOL:automatic]
"diencephalon neuraxis segment" EXACT [OBOL:automatic]
"diencephalon regional part of brain" EXACT [OBOL:automatic]
"diencephalon segment" EXACT [FMA:62005]
"diencephalon segment of brain" EXACT [OBOL:automatic]
"interbrain anatomical structure of brain" EXACT [OBOL:automatic]
"interbrain biological structure of brain" EXACT [OBOL:automatic]
"interbrain brain anatomical structure" EXACT [OBOL:automatic]
"interbrain brain biological structure" EXACT [OBOL:automatic]
"interbrain neuraxis segment" EXACT [OBOL:automatic]
"interbrain regional part of brain" EXACT [OBOL:automatic]
"interbrain segment of brain" EXACT [OBOL:automatic]
"mature diencephalon anatomical structure of brain" EXACT [OBOL:automatic]
"mature diencephalon biological structure of brain" EXACT [OBOL:automatic]
"mature diencephalon brain anatomical structure" EXACT [OBOL:automatic]
"mature diencephalon brain biological structure" EXACT [OBOL:automatic]
"mature diencephalon neuraxis segment" EXACT [OBOL:automatic]
"mature diencephalon regional part of brain" EXACT [OBOL:automatic]
"mature diencephalon segment of brain" EXACT [OBOL:automatic]
"neuraxis segment of between brain" EXACT [OBOL:automatic]
"neuraxis segment of diencephalon" EXACT [OBOL:automatic]
"neuraxis segment of interbrain" EXACT [OBOL:automatic]
"neuraxis segment of mature diencephalon" EXACT [OBOL:automatic]
"regional part of brain of between brain" EXACT [OBOL:automatic]
"regional part of brain of diencephalon" EXACT [OBOL:automatic]
"regional part of brain of interbrain" EXACT [OBOL:automatic]
"regional part of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of brain of between brain" EXACT [OBOL:automatic]
"segment of brain of diencephalon" EXACT [OBOL:automatic]
"segment of brain of interbrain" EXACT [OBOL:automatic]
"segment of brain of mature diencephalon" EXACT [OBOL:automatic]
"segment of diencephalon" EXACT [NIF_GrossAnatomy:birnlex_1685]
Alt_id: UBERON:NIF_GrossAnatomy_birnlex_1685-FMA_62005

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0002780(regional part of forebrain)
part_of:UBERON:0001894(diencephalon)



Children

is a:UBERON:0001897 (dorsal plus ventral thalamus),UBERON:0001899 (epithalamus),UBERON:0002757 (regional part of epithalamus),UBERON:0010225 (thalamic complex)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002784 (regional part of diencephalon), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
2.76e-110FFCP PHASE1:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
2.76e-110FFCP PHASE2:Hg19::chr15:75122737..75122741,+#_79d90823136ff9090c698e3c2def78c6p@chr15:75122737..75122741, +
1.55e-98FFCP PHASE2:Hg19::chr8:135504314..135504320,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504314..135504320, -
1.55e-98FFCP PHASE1:Hg19::chr13:68306577..68306607,+#_d4b612b81135e7d6f100ad68e256a789p@chr13:68306577..68306607, +
1.55e-98FFCP PHASE1:Hg19::chr8:135474173..135474185,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135474173..135474185, -
1.55e-98FFCP PHASE1:Hg19::chr11:18041244..18041266,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18041244..18041266, -
1.55e-98FFCP PHASE2:Hg19::chr10:80984180..80984190,-#_d4b612b81135e7d6f100ad68e256a789p@chr10:80984180..80984190, -
1.55e-98FFCP PHASE1:Hg19::chr12:55422858..55422866,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:55422858..55422866, +
1.55e-98FFCP PHASE2:Hg19::chr12:121088132..121088135,+#_d4b612b81135e7d6f100ad68e256a789p15@CABP1
1.55e-98FFCP PHASE2:Hg19::chr1:57907030..57907050,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57907030..57907050, +
1.55e-98FFCP PHASE2:Hg19::chr7:9782665..9782674,+#_d4b612b81135e7d6f100ad68e256a789p@chr7:9782665..9782674, +
1.55e-98FFCP PHASE1:Hg19::chr2:17185958..17185998,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17185958..17185998, +
1.55e-98FFCP PHASE2:Hg19::chr2:216447425..216447432,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000457625
1.55e-98FFCP PHASE2:Hg19::chr3:192894646..192894653,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000414895
1.55e-98FFCP PHASE2:Hg19::chr6:158734173..158734183,+#_d4b612b81135e7d6f100ad68e256a789p7@TULP4
1.55e-98FFCP PHASE2:Hg19::chr8:135473983..135473986,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473983..135473986, -
1.55e-98FFCP PHASE2:Hg19::chr12:60826120..60826127,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:60826120..60826127, +
1.55e-98FFCP PHASE1:Hg19::chr8:135473472..135473477,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473472..135473477, -
1.55e-98FFCP PHASE2:Hg19::chr1:99860753..99860764,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99860753..99860764, -
1.55e-98FFCP PHASE1:Hg19::chr15:55470984..55471009,-#_d4b612b81135e7d6f100ad68e256a789p@chr15:55470984..55471009, -
1.55e-98FFCP PHASE2:Hg19::chr5:119799576..119799585,+#_d4b612b81135e7d6f100ad68e256a789p10@PRR16
1.55e-98FFCP PHASE1:Hg19::chr5:135732714..135732721,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000514282
1.55e-98FFCP PHASE1:Hg19::chr3:54952462..54952471,-#_d4b612b81135e7d6f100ad68e256a789p@chr3:54952462..54952471, -
1.55e-98FFCP PHASE2:Hg19::chr18:56963107..56963117,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56963107..56963117, -
1.55e-98FFCP PHASE1:Hg19::chr11:18067951..18067954,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18067951..18067954, -
1.55e-98FFCP PHASE2:Hg19::chr11:18041244..18041266,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18041244..18041266, -
1.55e-98FFCP PHASE1:Hg19::chr17:55484129..55484139,+#_d4b612b81135e7d6f100ad68e256a789p@chr17:55484129..55484139, +
1.55e-98FFCP PHASE1:Hg19::chrX:33146501..33146521,-#_d4b612b81135e7d6f100ad68e256a789p32@DMD
1.55e-98FFCP PHASE1:Hg19::chr1:45782019..45782028,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:45782019..45782028, +
1.55e-98FFCP PHASE1:Hg19::chr18:56963107..56963117,-#_d4b612b81135e7d6f100ad68e256a789p@chr18:56963107..56963117, -
1.55e-98FFCP PHASE2:Hg19::chr11:18067904..18067908,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18067904..18067908, -
1.55e-98FFCP PHASE1:Hg19::chr13:52650530..52650533,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:52650530..52650533, -
1.55e-98FFCP PHASE1:Hg19::chr1:57907030..57907050,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57907030..57907050, +
1.55e-98FFCP PHASE2:Hg19::chr2:17185712..17185735,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17185712..17185735, +
1.55e-98FFCP PHASE2:Hg19::chr8:135515957..135515964,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135515957..135515964, +
1.55e-98FFCP PHASE2:Hg19::chr7:75864329..75864335,+#_d4b612b81135e7d6f100ad68e256a789p11@SRRM3
1.55e-98FFCP PHASE1:Hg19::chr17:6328202..6328224,-#_d4b612b81135e7d6f100ad68e256a789p1@BC014398
1.55e-98FFCP PHASE2:Hg19::chr8:87755821..87755822,-#_d4b612b81135e7d6f100ad68e256a789p10@CNGB3
1.55e-98FFCP PHASE1:Hg19::chr12:121088121..121088131,+#_d4b612b81135e7d6f100ad68e256a789p11@CABP1
1.55e-98FFCP PHASE1:Hg19::chr8:135504314..135504320,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504314..135504320, -
1.55e-98FFCP PHASE2:Hg19::chr16:18066345..18066365,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066345..18066365, -
1.55e-98FFCP PHASE2:Hg19::chr17:6328202..6328224,-#_d4b612b81135e7d6f100ad68e256a789p1@BC014398
1.55e-98FFCP PHASE2:Hg19::chr8:135499228..135499260,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135499228..135499260, -
1.55e-98FFCP PHASE2:Hg19::chr5:135732714..135732721,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000514282
1.55e-98FFCP PHASE1:Hg19::chr12:49621641..49621650,+#_d4b612b81135e7d6f100ad68e256a789p22@TUBA1C
1.55e-98FFCP PHASE2:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:92310419..92310432, +
1.55e-98FFCP PHASE2:Hg19::chr13:56628548..56628553,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:56628548..56628553, -
1.55e-98FFCP PHASE1:Hg19::chr8:135473983..135473986,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473983..135473986, -
1.55e-98FFCP PHASE2:Hg19::chr12:15134610..15134617,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:15134610..15134617, +
1.55e-98FFCP PHASE2:Hg19::chr7:36878535..36878540,+#_d4b612b81135e7d6f100ad68e256a789p4@ENST00000439998
1.55e-98FFCP PHASE1:Hg19::chr7:9782665..9782674,+#_d4b612b81135e7d6f100ad68e256a789p@chr7:9782665..9782674, +
1.55e-98FFCP PHASE2:Hg19::chr2:108616342..108616384,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:108616342..108616384, +
1.55e-98FFCP PHASE1:Hg19::chr2:216447425..216447432,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000457625
1.55e-98FFCP PHASE2:Hg19::chr2:44903714..44903719,+#_d4b612b81135e7d6f100ad68e256a789p8@CAMKMT
1.55e-98FFCP PHASE2:Hg19::chr12:56582028..56582062,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:56582028..56582062, +
1.55e-98FFCP PHASE2:Hg19::chr7:9194488..9194491,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9194488..9194491, -
1.55e-98FFCP PHASE1:Hg19::chr3:192894646..192894653,-#_d4b612b81135e7d6f100ad68e256a789p2@ENST00000414895
1.55e-98FFCP PHASE1:Hg19::chr12:6954834..6954841,+#_d4b612b81135e7d6f100ad68e256a789p9@GNB3
1.55e-98FFCP PHASE2:Hg19::chr2:17075761..17075773,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17075761..17075773, +
1.55e-98FFCP PHASE1:Hg19::chr6:158734173..158734183,+#_d4b612b81135e7d6f100ad68e256a789p7@TULP4
1.55e-98FFCP PHASE1:Hg19::chr13:21399081..21399087,+#_d4b612b81135e7d6f100ad68e256a789p@chr13:21399081..21399087, +
1.55e-98FFCP PHASE2:Hg19::chr13:52650486..52650491,-#_d4b612b81135e7d6f100ad68e256a789p@chr13:52650486..52650491, -
1.55e-98FFCP PHASE2:Hg19::chr7:120969099..120969104,+#_d4b612b81135e7d6f100ad68e256a789p3@WNT16
1.55e-98FFCP PHASE1:Hg19::chr2:17141934..17141935,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17141934..17141935, +
1.55e-98FFCP PHASE2:Hg19::chr15:55470964..55470974,-#_d4b612b81135e7d6f100ad68e256a789p@chr15:55470964..55470974, -
1.55e-98FFCP PHASE1:Hg19::chr1:99860753..99860764,-#_d4b612b81135e7d6f100ad68e256a789p@chr1:99860753..99860764, -
1.55e-98FFCP PHASE1:Hg19::chr5:119799576..119799585,+#_d4b612b81135e7d6f100ad68e256a789p10@PRR16
1.55e-98FFCP PHASE1:Hg19::chr12:81859007..81859036,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:81859007..81859036, +
1.55e-98FFCP PHASE1:Hg19::chr11:74951707..74951719,+#_d4b612b81135e7d6f100ad68e256a789p9@LOC100507050
1.55e-98FFCP PHASE2:Hg19::chr8:135473876..135473885,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473876..135473885, -
1.55e-98FFCP PHASE1:Hg19::chr2:17040158..17040170,+#_d4b612b81135e7d6f100ad68e256a789p@chr2:17040158..17040170, +
1.55e-98FFCP PHASE2:Hg19::chr8:135521466..135521470,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135521466..135521470, +
1.55e-98FFCP PHASE1:Hg19::chr16:51174216..51174239,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:51174216..51174239, -
1.55e-98FFCP PHASE2:Hg19::chr16:50898098..50898107,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:50898098..50898107, -
1.55e-98FFCP PHASE2:Hg19::chrX:33146637..33146644,-#_d4b612b81135e7d6f100ad68e256a789p35@DMD
1.55e-98FFCP PHASE2:Hg19::chr16:51175701..51175708,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:51175701..51175708, -
1.55e-98FFCP PHASE1:Hg19::chr8:135515957..135515964,+#_d4b612b81135e7d6f100ad68e256a789p@chr8:135515957..135515964, +
1.55e-98FFCP PHASE1:Hg19::chr7:75864329..75864335,+#_d4b612b81135e7d6f100ad68e256a789p11@SRRM3
1.55e-98FFCP PHASE1:Hg19::chr11:18053180..18053192,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:18053180..18053192, -
1.55e-98FFCP PHASE1:Hg19::chr8:87755821..87755822,-#_d4b612b81135e7d6f100ad68e256a789p10@CNGB3
1.55e-98FFCP PHASE2:Hg19::chr8:135504337..135504342,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135504337..135504342, -
1.55e-98FFCP PHASE1:Hg19::chr2:44903714..44903719,+#_d4b612b81135e7d6f100ad68e256a789p8@CAMKMT
1.55e-98FFCP PHASE1:Hg19::chr7:9194488..9194491,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:9194488..9194491, -
1.55e-98FFCP PHASE1:Hg19::chr1:204620238..204620253,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:204620238..204620253, +
1.55e-98FFCP PHASE1:Hg19::chr16:18066392..18066397,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18066392..18066397, -
1.55e-98FFCP PHASE2:Hg19::chr17:55484129..55484139,+#_d4b612b81135e7d6f100ad68e256a789p@chr17:55484129..55484139, +
1.55e-98FFCP PHASE1:Hg19::chr8:135499228..135499260,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135499228..135499260, -
1.55e-98FFCP PHASE2:Hg19::chr16:18036005..18036011,-#_d4b612b81135e7d6f100ad68e256a789p@chr16:18036005..18036011, -
1.55e-98FFCP PHASE1:Hg19::chr9:92310419..92310432,+#_d4b612b81135e7d6f100ad68e256a789p@chr9:92310419..92310432, +
1.55e-98FFCP PHASE1:Hg19::chr7:129084265..129084288,-#_d4b612b81135e7d6f100ad68e256a789p@chr7:129084265..129084288, -
1.55e-98FFCP PHASE2:Hg19::chr1:57914395..57914398,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:57914395..57914398, +
1.55e-98FFCP PHASE1:Hg19::chr7:36878535..36878540,+#_d4b612b81135e7d6f100ad68e256a789p4@ENST00000439998
1.55e-98FFCP PHASE2:Hg19::chr1:13820103..13820109,+#_d4b612b81135e7d6f100ad68e256a789p@chr1:13820103..13820109, +
1.55e-98FFCP PHASE2:Hg19::chr9:37668094..37668097,+#_d4b612b81135e7d6f100ad68e256a789p6@FRMPD1
1.55e-98FFCP PHASE2:Hg19::chr12:6956383..6956390,+#_d4b612b81135e7d6f100ad68e256a789p@chr12:6956383..6956390, +
1.55e-98FFCP PHASE1:Hg19::chr8:135473876..135473885,-#_d4b612b81135e7d6f100ad68e256a789p@chr8:135473876..135473885, -
1.55e-98FFCP PHASE2:Hg19::chr3:192894664..192894677,-#_d4b612b81135e7d6f100ad68e256a789p1@ENST00000414895
1.55e-98FFCP PHASE1:Hg19::chr5:136699666..136699696,-#_d4b612b81135e7d6f100ad68e256a789p@chr5:136699666..136699696, -
1.55e-98FFCP PHASE2:Hg19::chr11:72297712..72297715,-#_d4b612b81135e7d6f100ad68e256a789p@chr11:72297712..72297715, -
1.55e-98FFCP PHASE1:Hg19::chr4:20985690..20985695,-#_d4b612b81135e7d6f100ad68e256a789p38@KCNIP4