CL:1000600: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:28, 26 June 2012
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000548(animal cell) |
|---|
Children
| is a: | CL:1001319 (bladder cell) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
Mouse (Mus musculus)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11519-119H7 (Smooth Muscle Cells - Bladder, donor1)
- 11599-120H6
- 11680-122H6
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:1000600 (lower urinary tract cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_128616f5e8a6bdaf0636a433cab16b83 | p@chr15:101282110..101282113, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_128616f5e8a6bdaf0636a433cab16b83 | p2@ENST00000427341 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_128616f5e8a6bdaf0636a433cab16b83 | p@chr15:101282110..101282113, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_128616f5e8a6bdaf0636a433cab16b83 | p2@ENST00000427341 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21664489..21664494,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21664489..21664494, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_293b098470ab54ce046fafc6a8fe4708 | p26@LINC00340 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_293b098470ab54ce046fafc6a8fe4708 | p26@LINC00340 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21383702..21383704,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21383702..21383704, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr21:39627877..39627884, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21383702..21383704,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21383702..21383704, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr21:39627877..39627884, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr3:13992334..13992338,-#_293b098470ab54ce046fafc6a8fe4708 | p@chr3:13992334..13992338, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21588091..21588098,-#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21588091..21588098, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr3:13992334..13992338,-#_293b098470ab54ce046fafc6a8fe4708 | p@chr3:13992334..13992338, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:21588091..21588098,-#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21588091..21588098, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:21664489..21664494,+#_293b098470ab54ce046fafc6a8fe4708 | p@chr6:21664489..21664494, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:233430709..233430711,+#_9e8d14a3415283b0642a312b91bcf16f | p@chr1:233430709..233430711, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:233430709..233430711,+#_9e8d14a3415283b0642a312b91bcf16f | p@chr1:233430709..233430711, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:21876977..21876981,+#_9e8d14a3415283b0642a312b91bcf16f | p@chr6:21876977..21876981, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:21876977..21876981,+#_9e8d14a3415283b0642a312b91bcf16f | p@chr6:21876977..21876981, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr13:96459990..96459992,+#_13416923be51f049b7fcf22b05270cc4 | p@chr13:96459990..96459992, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr6:21664412..21664419,+#_13416923be51f049b7fcf22b05270cc4 | p@chr6:21664412..21664419, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr13:96459990..96459992,+#_13416923be51f049b7fcf22b05270cc4 | p@chr13:96459990..96459992, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr6:21664412..21664419,+#_13416923be51f049b7fcf22b05270cc4 | p@chr6:21664412..21664419, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:69867053..69867065,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p2@ENST00000528507 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr15:79296342..79296353,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr15:79296342..79296353, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:69867053..69867065,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p2@ENST00000528507 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr6:20534754..20534756,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr6:20534754..20534756, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:176971270..176971277,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr2:176971270..176971277, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:176971270..176971277,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr2:176971270..176971277, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr6:20534754..20534756,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr6:20534754..20534756, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr15:79296342..79296353,-#_55f1276d0fe4ce57379b8a19c7b1a86f | p@chr15:79296342..79296353, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr14:80855894..80855900,+#_eca0c03bad001c8a39ffb9dc0d21512b | p@chr14:80855894..80855900, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr15:40544787..40544798,+#_eca0c03bad001c8a39ffb9dc0d21512b | p23@PAK6 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:92613787..92613796,+#_eca0c03bad001c8a39ffb9dc0d21512b | p@chr11:92613787..92613796, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr15:40544787..40544798,+#_eca0c03bad001c8a39ffb9dc0d21512b | p23@PAK6 |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:92613787..92613796,+#_eca0c03bad001c8a39ffb9dc0d21512b | p@chr11:92613787..92613796, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr14:80855894..80855900,+#_eca0c03bad001c8a39ffb9dc0d21512b | p@chr14:80855894..80855900, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21022855..21022892,+#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21022855..21022892, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21022855..21022892,+#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21022855..21022892, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21665113..21665128,-#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21665113..21665128, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21665113..21665128,-#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21665113..21665128, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr6:21665769..21665780,+#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21665769..21665780, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr6:21665769..21665780,+#_fb9c8de47223357ee3b9a28a6e19f720 | p@chr6:21665769..21665780, + |
| 3.99e-50 | FFCP PHASE2:Hg19::chr17:4699695..4699699,-#_d7a8c050d25a83cd05ed8e9a5af1572a | p@chr17:4699695..4699699, - |
| 3.99e-50 | FFCP PHASE1:Hg19::chr17:4699695..4699699,-#_d7a8c050d25a83cd05ed8e9a5af1572a | p@chr17:4699695..4699699, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr10:30046722..30046725,-#_a51b775c65a43b71df89a00143e12bbc | p@chr10:30046722..30046725, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr5:57555322..57555334,-#_a51b775c65a43b71df89a00143e12bbc | p@chr5:57555322..57555334, - |
| 9.91e-41 | FFCP PHASE2:Hg19::chr5:57555322..57555334,-#_a51b775c65a43b71df89a00143e12bbc | p@chr5:57555322..57555334, - |
| 9.91e-41 | FFCP PHASE1:Hg19::chr6:22221030..22221034,+#_a51b775c65a43b71df89a00143e12bbc | p1@AL117559 |
| 9.91e-41 | FFCP PHASE2:Hg19::chr6:22221030..22221034,+#_a51b775c65a43b71df89a00143e12bbc | p1@AL117559 |
| 9.91e-41 | FFCP PHASE1:Hg19::chr10:30046722..30046725,-#_a51b775c65a43b71df89a00143e12bbc | p@chr10:30046722..30046725, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr17:2264983..2264992,+#_6f7cbe1e42cc3aee638bafadcacfe90b | p@chr17:2264983..2264992, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:30151938..30151956,-#_6f7cbe1e42cc3aee638bafadcacfe90b | p@chr10:30151938..30151956, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr17:2264983..2264992,+#_6f7cbe1e42cc3aee638bafadcacfe90b | p@chr17:2264983..2264992, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:30151938..30151956,-#_6f7cbe1e42cc3aee638bafadcacfe90b | p@chr10:30151938..30151956, - |
| 3.3e-40 | FFCP PHASE1:Hg19::chr15:101417937..101417955,+#_ae3b2b06385be87e015bfe9917efd317 | p8@ALDH1A3 |
| 3.3e-40 | FFCP PHASE2:Hg19::chr19:48102065..48102072,+#_ae3b2b06385be87e015bfe9917efd317 | p@chr19:48102065..48102072, + |
| 3.3e-40 | FFCP PHASE2:Hg19::chr15:101417937..101417955,+#_ae3b2b06385be87e015bfe9917efd317 | p8@ALDH1A3 |
| 3.3e-40 | FFCP PHASE1:Hg19::chr19:48102065..48102072,+#_ae3b2b06385be87e015bfe9917efd317 | p@chr19:48102065..48102072, + |
| 1.84e-34 | FFCP PHASE1:Hg19::chr6:21680979..21680984,+#_e504f42de947c93e222dd52906387553 | p@chr6:21680979..21680984, + |
| 1.84e-34 | FFCP PHASE2:Hg19::chr6:21680979..21680984,+#_e504f42de947c93e222dd52906387553 | p@chr6:21680979..21680984, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr2:177042702..177042725,-#_1435184b35f64f901853b088b815dbad | p2@uc002uku.2 |
| 2.58e-34 | FFCP PHASE1:Hg19::chr4:183752843..183752848,+#_1435184b35f64f901853b088b815dbad | p@chr4:183752843..183752848, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr4:183752843..183752848,+#_1435184b35f64f901853b088b815dbad | p@chr4:183752843..183752848, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr6:21070033..21070038,+#_1435184b35f64f901853b088b815dbad | p@chr6:21070033..21070038, + |
| 2.58e-34 | FFCP PHASE2:Hg19::chr6:21070033..21070038,+#_1435184b35f64f901853b088b815dbad | p@chr6:21070033..21070038, + |
| 2.58e-34 | FFCP PHASE1:Hg19::chr2:177042702..177042725,-#_1435184b35f64f901853b088b815dbad | p2@uc002uku.2 |
| 3.61e-34 | FFCP PHASE1:Hg19::chr6:22047883..22047886,+#_4721123df0256db0ef0280ef91e1b1d4 | p@chr6:22047883..22047886, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr6:22047883..22047886,+#_4721123df0256db0ef0280ef91e1b1d4 | p@chr6:22047883..22047886, + |
| 5.05e-34 | FFCP PHASE2:Hg19::chr19:34618510..34618515,-#_16d2b8365dde9e832eefd9eeb8b7629e | p@chr19:34618510..34618515, - |
| 5.05e-34 | FFCP PHASE1:Hg19::chr19:34618510..34618515,-#_16d2b8365dde9e832eefd9eeb8b7629e | p@chr19:34618510..34618515, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr6:21665095..21665110,-#_fedad4981de9f250048ba03781d5b95c | p@chr6:21665095..21665110, - |
| 7.48e-30 | FFCP PHASE2:Hg19::chr6:21665095..21665110,-#_fedad4981de9f250048ba03781d5b95c | p@chr6:21665095..21665110, - |
| 7.48e-30 | FFCP PHASE1:Hg19::chr5:54179495..54179507,+#_fedad4981de9f250048ba03781d5b95c | p@chr5:54179495..54179507, + |
| 7.48e-30 | FFCP PHASE2:Hg19::chr5:54179495..54179507,+#_fedad4981de9f250048ba03781d5b95c | p@chr5:54179495..54179507, + |
| 7.48e-30 | FFCP PHASE1:Hg19::chr1:52629146..52629156,-#_fedad4981de9f250048ba03781d5b95c | p1@ENST00000412785 |
| 7.48e-30 | FFCP PHASE1:Hg19::chr6:20402608..20402629,+#_fedad4981de9f250048ba03781d5b95c | p13@E2F3 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr1:52629146..52629156,-#_fedad4981de9f250048ba03781d5b95c | p1@ENST00000412785 |
| 7.48e-30 | FFCP PHASE2:Hg19::chr6:20402608..20402629,+#_fedad4981de9f250048ba03781d5b95c | p13@E2F3 |
| 2.37e-29 | FFCP PHASE1:Hg19::chr2:109605543..109605554,-#_6d5bd3f012b7bcc7a23da0ac11081c94 | p4@EDAR |
| 2.37e-29 | FFCP PHASE2:Hg19::chr2:109605543..109605554,-#_6d5bd3f012b7bcc7a23da0ac11081c94 | p4@EDAR |
| 2.37e-29 | FFCP PHASE1:Hg19::chr6:161454984..161455010,+#_6d5bd3f012b7bcc7a23da0ac11081c94 | p14@MAP3K4 |
| 2.37e-29 | FFCP PHASE2:Hg19::chr6:161454984..161455010,+#_6d5bd3f012b7bcc7a23da0ac11081c94 | p14@MAP3K4 |
| 4.2e-29 | FFCP PHASE1:Hg19::chrX:104100378..104100381,+#_1b0f041016d35d33238382c019bd228d | p@chrX:104100378..104100381, + |
| 4.2e-29 | FFCP PHASE2:Hg19::chrX:104100378..104100381,+#_1b0f041016d35d33238382c019bd228d | p@chrX:104100378..104100381, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr13:107029084..107029103,+#_beedf0e847eda19f8b6c619fd66ceeb6 | p4@LINC00460 |
| 2.78e-26 | FFCP PHASE1:Hg19::chr13:107029084..107029103,+#_beedf0e847eda19f8b6c619fd66ceeb6 | p4@LINC00460 |
| 2.78e-26 | FFCP PHASE1:Hg19::chr6:21933119..21933123,+#_beedf0e847eda19f8b6c619fd66ceeb6 | p@chr6:21933119..21933123, + |
| 2.78e-26 | FFCP PHASE2:Hg19::chr6:21933119..21933123,+#_beedf0e847eda19f8b6c619fd66ceeb6 | p@chr6:21933119..21933123, + |
| 3.58e-26 | FFCP PHASE1:Hg19::chr3:104180688..104180692,+#_476189fba62e59dcaf681cea1d93d0fe | p@chr3:104180688..104180692, + |
| 3.58e-26 | FFCP PHASE2:Hg19::chr3:104180688..104180692,+#_476189fba62e59dcaf681cea1d93d0fe | p@chr3:104180688..104180692, + |
| 4.61e-26 | FFCP PHASE2:Hg19::chr15:101418003..101418019,+#_98496ca18d24edccbc5206fb907a84dc | p5@ALDH1A3 |
| 4.61e-26 | FFCP PHASE1:Hg19::chr15:101418003..101418019,+#_98496ca18d24edccbc5206fb907a84dc | p5@ALDH1A3 |
| 4.61e-26 | FFCP PHASE1:Hg19::chr7:121156367..121156370,-#_98496ca18d24edccbc5206fb907a84dc | p@chr7:121156367..121156370, - |
| 4.61e-26 | FFCP PHASE2:Hg19::chr1:12239065..12239070,-#_98496ca18d24edccbc5206fb907a84dc | p@chr1:12239065..12239070, - |
| 4.61e-26 | FFCP PHASE2:Hg19::chr7:121156367..121156370,-#_98496ca18d24edccbc5206fb907a84dc | p@chr7:121156367..121156370, - |
| 4.61e-26 | FFCP PHASE1:Hg19::chr9:93960724..93960730,+#_98496ca18d24edccbc5206fb907a84dc | p@chr9:93960724..93960730, + |
| 4.61e-26 | FFCP PHASE2:Hg19::chr9:93960724..93960730,+#_98496ca18d24edccbc5206fb907a84dc | p@chr9:93960724..93960730, + |
| 4.61e-26 | FFCP PHASE1:Hg19::chr1:12239065..12239070,-#_98496ca18d24edccbc5206fb907a84dc | p@chr1:12239065..12239070, - |
