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|id=CL:0000955
|id=CL:0000955
|name=pre-B-II cell
|name=pre-B-II cell
|namespace=efo
|namespace=cell;;efo
|def="A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
|def="A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
|xref=BTO:0001133
|xref=BTO:0001133
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=CL:0000826
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:26, 26 June 2012

Name:pre-B-II cell
Namespace:cell;;efo
Definition:"A pre-B-II cell is a precursor B cell that expresses immunoglobulin mu heavy chain (IgHmu+), and lack expression of CD34, TdT, immunoglobulin kappa light chain and immunoglobulin lambda light chain." [GO_REF:0000031, GOC:rhs, GOC:tfm, PMID:9785673]
Xrefs:
links:
BTO:0001133
Synonyms: "pre-B-lymphocyte" EXACT []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000817(precursor B cell)



Children


is a:CL:0000954 (small pre-B-II cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000955 (pre-B-II cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557fp16@BCL7A
1.55e-98FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76471163..76471166, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466325..164466331, +
1.55e-98FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:122462770..122462775, +
1.55e-98FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:89012355..89012363, +
1.55e-98FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557fp5@T
1.55e-98FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:8808206..8808209, -
1.55e-98FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20747453..20747465, -
1.55e-98FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chrX:42727038..42727047, -
1.55e-98FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40953942..40953946, +
1.55e-98FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE1:Hg19::chr6:164466345..164466352,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466345..164466352, +
1.55e-98FFCP PHASE1:Hg19::chr1:101853882..101853891,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr1:101853882..101853891, -
1.55e-98FFCP PHASE1:Hg19::chr4:176353908..176353917,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176353908..176353917, -
1.55e-98FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557fp8@SDHB
1.55e-98FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557fp9@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr8:128270027..128270033, -
1.55e-98FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr7:86415255..86415288, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_52b99d9e924181bfc3bad0e6f3b3557fp5@T
1.55e-98FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:178947187..178947192, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557fp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752389..20752420, -
1.55e-98FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:79363599..79363606, +
1.55e-98FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:176358284..176358287, -
1.55e-98FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr15:66464730..66464736, -
1.55e-98FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:164466441..164466449, +
1.55e-98FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr9:138904824..138904829, +
1.55e-98FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:88646759..88646764, +
1.55e-98FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_52b99d9e924181bfc3bad0e6f3b3557fp6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20867728..20867731, -
1.55e-98FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_52b99d9e924181bfc3bad0e6f3b3557fp14@LRRTM4
1.55e-98FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr11:26122006..26122011, -
1.55e-98FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_52b99d9e924181bfc3bad0e6f3b3557fp8@SDHB
1.55e-98FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr14:53594794..53594799, +
1.55e-98FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168236611..168236612, -
1.55e-98FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr10:56410468..56410499, -
1.55e-98FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76471146..76471155, +
1.55e-98FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_52b99d9e924181bfc3bad0e6f3b3557fp9@LRRTM4
1.55e-98FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:158747347..158747353, +
1.55e-98FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr22:23234780..23234786, +
1.55e-98FFCP PHASE2:Hg19::chr6:166581590..166581596,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581590..166581596, +
1.55e-98FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:19436672..19436686, +
1.55e-98FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr21:20752617..20752622, -
1.55e-98FFCP PHASE2:Hg19::chr2:77581116..77581120,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr2:77581116..77581120, -
1.55e-98FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:40991131..40991149, +
1.55e-98FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_52b99d9e924181bfc3bad0e6f3b3557fp1@HM996258, p1@HM996415, p1@HM996438
1.55e-98FFCP PHASE2:Hg19::chr6:39962337..39962342,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962337..39962342, +
1.55e-98FFCP PHASE2:Hg19::chr4:8046990..8046993,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046990..8046993, -
1.55e-98FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr17:76475275..76475285, -
1.55e-98FFCP PHASE2:Hg19::chr3:6686484..6686491,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:6686484..6686491, +
1.55e-98FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:166581583..166581586, +
1.55e-98FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr6:39962295..39962305, +
1.55e-98FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:8046897..8046900, +
1.55e-98FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:117256221..117256231, +
1.55e-98FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr4:3881462..3881469, -
1.55e-98FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr12:4313331..4313334, +
1.55e-98FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_52b99d9e924181bfc3bad0e6f3b3557fp@chr5:114291872..114291873, +
1.55e-98FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr11:26124040..26124064, -
1.55e-98FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_52b99d9e924181bfc3bad0e6f3b3557fp6@SDHB
1.55e-98FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_52b99d9e924181bfc3bad0e6f3b3557fp@chr3:168337915..168337930, -
1.55e-98FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_52b99d9e924181bfc3bad0e6f3b3557fp16@BCL7A

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