CL:0000818: Difference between revisions
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|id=CL:0000818 | |id=CL:0000818 | ||
|name=transitional stage B cell | |name=transitional stage B cell | ||
|namespace=efo | |namespace=cell;;efo | ||
|def="An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111] | |def="An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111] | ||
|xref= | |xref= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:26, 26 June 2012
| Name: | transitional stage B cell |
|---|---|
| Namespace: | cell;;efo |
| Definition: | "An immature B cell of an intermediate stage between the pre-B cell stage and the mature naive stage with the phenotype surface IgM-positive and CD19-positive, and are subject to the process of B cell selection. A transitional B cell migrates from the bone marrow into the peripheral circulation, and then to the spleen." [GO_REF:0000031, GOC:add, ISBN:0781735149, PMID:12810111] |
| Synonyms: |
"T1 B cell" NARROW [] "T2 B cell" NARROW [] "T3 B cell" NARROW [] "transitional stage B lymphocyte" EXACT [] "transitional stage B-cell" EXACT [] "transitional stage B-lymphocyte" EXACT [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000236(B cell) |
|---|
Children
| disjoint from: | CL:0000785 (mature B cell) |
|---|---|
| develops from: | CL:0000785 (mature B cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000818 (transitional stage B cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:128270027..128270033,-#_0840a092d77f3990a2866b109d5efc93 | p@chr8:128270027..128270033, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:3881462..3881469, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:86415255..86415288,+#_0840a092d77f3990a2866b109d5efc93 | p@chr7:86415255..86415288, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93 | p@chr5:114291872..114291873, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581265..166581274,-#_0840a092d77f3990a2866b109d5efc93 | p5@T |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:178947187..178947192, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:40953942..40953946,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:40953942..40953946, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93 | p1@HM996258, p1@HM996415, p1@HM996438 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:164466325..164466331, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20752389..20752420,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20752389..20752420, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:79363599..79363606, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93 | p@chrX:89012355..89012363, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93 | p@chr15:66464730..66464736, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93 | p@chr12:8808206..8808209, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:164466441..164466449, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:176358284..176358287, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93 | p@chr5:88646759..88646764, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20867728..20867731, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93 | p8@SDHB |
| 1.55e-98 | FFCP PHASE2:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93 | p@chr14:53594794..53594799, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93 | p@chr3:168236611..168236612, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93 | p@chr10:56410468..56410499, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76471146..76471155, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20747453..20747465, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:77746703..77746711,-#_0840a092d77f3990a2866b109d5efc93 | p9@LRRTM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:56410468..56410499,-#_0840a092d77f3990a2866b109d5efc93 | p@chr10:56410468..56410499, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93 | p@chrX:42727038..42727047, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:164466345..164466352,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:164466345..164466352, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:101853882..101853891,-#_0840a092d77f3990a2866b109d5efc93 | p@chr1:101853882..101853891, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20752617..20752622, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:176353908..176353917,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:176353908..176353917, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93 | p@chr11:26122006..26122011, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:76475275..76475285,-#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76475275..76475285, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:166581583..166581586, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:39962295..39962305, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93 | p@chr4:8046897..8046900, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:128270027..128270033,-#_0840a092d77f3990a2866b109d5efc93 | p@chr8:128270027..128270033, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:4313331..4313334,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:4313331..4313334, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:86415255..86415288,+#_0840a092d77f3990a2866b109d5efc93 | p@chr7:86415255..86415288, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:4313331..4313334,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:4313331..4313334, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:166581265..166581274,-#_0840a092d77f3990a2866b109d5efc93 | p5@T |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93 | p6@SDHB |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:168236611..168236612,-#_0840a092d77f3990a2866b109d5efc93 | p@chr3:168236611..168236612, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:168337915..168337930,-#_0840a092d77f3990a2866b109d5efc93 | p@chr3:168337915..168337930, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:178947187..178947192,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:178947187..178947192, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76471163..76471166, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20752389..20752420,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20752389..20752420, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:26122006..26122011,-#_0840a092d77f3990a2866b109d5efc93 | p@chr11:26122006..26122011, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:77746775..77746779,-#_0840a092d77f3990a2866b109d5efc93 | p14@LRRTM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76471146..76471155,+#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76471146..76471155, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:79363599..79363606,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:79363599..79363606, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93 | p@chr22:23234780..23234786, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:164466441..164466449,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:164466441..164466449, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:8808206..8808209,-#_0840a092d77f3990a2866b109d5efc93 | p@chr12:8808206..8808209, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:176358284..176358287,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:176358284..176358287, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:117256221..117256231, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr11:26124040..26124064,-#_0840a092d77f3990a2866b109d5efc93 | p@chr11:26124040..26124064, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:88646759..88646764,+#_0840a092d77f3990a2866b109d5efc93 | p@chr5:88646759..88646764, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:19436672..19436686, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:117256221..117256231,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:117256221..117256231, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:138904824..138904829,+#_0840a092d77f3990a2866b109d5efc93 | p@chr9:138904824..138904829, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20867728..20867731,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20867728..20867731, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:166581590..166581596,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:166581590..166581596, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:122458855..122458857,+#_0840a092d77f3990a2866b109d5efc93 | p16@BCL7A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:39962337..39962342,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:39962337..39962342, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:17349613..17349631,-#_0840a092d77f3990a2866b109d5efc93 | p8@SDHB |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:8046990..8046993,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:8046990..8046993, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76475275..76475285,-#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76475275..76475285, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:6686484..6686491,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:6686484..6686491, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:77581116..77581120,-#_0840a092d77f3990a2866b109d5efc93 | p@chr2:77581116..77581120, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:53594794..53594799,+#_0840a092d77f3990a2866b109d5efc93 | p@chr14:53594794..53594799, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:77746703..77746711,-#_0840a092d77f3990a2866b109d5efc93 | p9@LRRTM4 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:122458855..122458857,+#_0840a092d77f3990a2866b109d5efc93 | p16@BCL7A |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:3881462..3881469,-#_0840a092d77f3990a2866b109d5efc93 | p@chr4:3881462..3881469, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:168337915..168337930,-#_0840a092d77f3990a2866b109d5efc93 | p@chr3:168337915..168337930, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:122462770..122462775, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:20752617..20752622,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20752617..20752622, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr11:26124040..26124064,-#_0840a092d77f3990a2866b109d5efc93 | p@chr11:26124040..26124064, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:158747347..158747353, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr14:106829914..106829921,-#_0840a092d77f3990a2866b109d5efc93 | p1@HM996258, p1@HM996415, p1@HM996438 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:76471163..76471166,+#_0840a092d77f3990a2866b109d5efc93 | p@chr17:76471163..76471166, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:164466325..164466331,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:164466325..164466331, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:166581583..166581586,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:166581583..166581586, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:122462770..122462775,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:122462770..122462775, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr12:40991131..40991149,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:40991131..40991149, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:39962295..39962305,+#_0840a092d77f3990a2866b109d5efc93 | p@chr6:39962295..39962305, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:8046897..8046900,+#_0840a092d77f3990a2866b109d5efc93 | p@chr4:8046897..8046900, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:40991131..40991149,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:40991131..40991149, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:89012355..89012363,+#_0840a092d77f3990a2866b109d5efc93 | p@chrX:89012355..89012363, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:138904824..138904829,+#_0840a092d77f3990a2866b109d5efc93 | p@chr9:138904824..138904829, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:17349654..17349690,-#_0840a092d77f3990a2866b109d5efc93 | p6@SDHB |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:114291872..114291873,+#_0840a092d77f3990a2866b109d5efc93 | p@chr5:114291872..114291873, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:77746775..77746779,-#_0840a092d77f3990a2866b109d5efc93 | p14@LRRTM4 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:20747453..20747465,-#_0840a092d77f3990a2866b109d5efc93 | p@chr21:20747453..20747465, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr22:23234780..23234786,+#_0840a092d77f3990a2866b109d5efc93 | p@chr22:23234780..23234786, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr15:66464730..66464736,-#_0840a092d77f3990a2866b109d5efc93 | p@chr15:66464730..66464736, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:158747347..158747353,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:158747347..158747353, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:42727038..42727047,-#_0840a092d77f3990a2866b109d5efc93 | p@chrX:42727038..42727047, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:19436672..19436686,+#_0840a092d77f3990a2866b109d5efc93 | p@chr3:19436672..19436686, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr12:40953942..40953946,+#_0840a092d77f3990a2866b109d5efc93 | p@chr12:40953942..40953946, + |
