UBERON:0009117: Difference between revisions
From FANTOM5_SSTAR
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|obo_creation_date= | |obo_creation_date= | ||
|subset=organ_slim | |subset=organ_slim | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:08, 26 June 2012
| Name: | indifferent gonad | ||
|---|---|---|---|
| Definition: | "A gonad prior to differentiating into a definitive testis or ovary." [1] | ||
| Xrefs: |
| ||
| Comments: | typically part of the embryo - however, in male tammar wallabies the gonads are indifferent at the neonatal stage[8827321] | ||
| Subset: | organ_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000991(gonad) |
|---|
Children
| disjoint from: | UBERON:0000473 (testis),UBERON:0000992 (female gonad) |
|---|---|
| develops from: | UBERON:0000473 (testis),UBERON:0000992 (female gonad) |
| part of: | UBERON:0010141 (primitive sex cord of indifferent gonad) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009117 (indifferent gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.56e-61 | FFCP PHASE2:Mm9::chr4:62295167..62295182,+#_27cbc34287601ded82b7eb5b14cd460f | p22@Rgs3 |
| 5.56e-61 | FFCP PHASE1:Mm9::chr4:62295167..62295182,+#_27cbc34287601ded82b7eb5b14cd460f | p22@Rgs3 |
| 4.35e-59 | FFCP PHASE2:Mm9::chr7:52741629..52741644,+#_18ca1c93c25949062c16a56c3371fbc7 | p7@Tulp2 |
| 4.35e-59 | FFCP PHASE1:Mm9::chr7:52741629..52741644,+#_18ca1c93c25949062c16a56c3371fbc7 | p7@Tulp2 |
| 7.74e-59 | FFCP PHASE1:Mm9::chr2:148615085..148615142,+#_987a1657bc8386efd9faa0d6d5fe1256 | p1@Cst12 |
| 7.74e-59 | FFCP PHASE2:Mm9::chr2:148615085..148615142,+#_987a1657bc8386efd9faa0d6d5fe1256 | p1@Cst12 |
| 4.05e-58 | FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_854ca5f2616992df6371fb994db8c36e | p4@STAR |
| 4.05e-58 | FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_854ca5f2616992df6371fb994db8c36e | p4@STAR |
| 7.96e-58 | FFCP PHASE1:Mm9::chr7:109015811..109015852,-#_d53a91f819ad87c94a83f1bb01d7d732 | p6@Folr1 |
| 7.96e-58 | FFCP PHASE2:Mm9::chr7:109015811..109015852,-#_d53a91f819ad87c94a83f1bb01d7d732 | p6@Folr1 |
| 2.1e-57 | FFCP PHASE2:Mm9::chr3:40512838..40512859,+#_51a3a02e115ec541c2b70b0cbf5812c8 | p2@Slc25a31 |
| 2.1e-57 | FFCP PHASE1:Mm9::chr3:40512838..40512859,+#_51a3a02e115ec541c2b70b0cbf5812c8 | p2@Slc25a31 |
| 3.2e-57 | FFCP PHASE2:Mm9::chr6:18059038..18059062,-#_8dd86feefb0740d1d0f161ef1b67720b | p1@Asz1 |
| 3.2e-57 | FFCP PHASE1:Mm9::chr6:18059038..18059062,-#_8dd86feefb0740d1d0f161ef1b67720b | p1@Asz1 |
| 4.39e-57 | FFCP PHASE2:Mm9::chrX:103416484..103416508,-#_894ee713214709166371bf7b2b6e5c36 | p4@Taf9b |
| 4.39e-57 | FFCP PHASE1:Mm9::chrX:103416484..103416508,-#_894ee713214709166371bf7b2b6e5c36 | p4@Taf9b |
| 1.84e-56 | FFCP PHASE2:Hg19::chr1:44584485..44584512,+#_12f79e98bf506e5bdecd96d798798326 | p2@KLF17 |
| 1.84e-56 | FFCP PHASE1:Hg19::chr1:44584485..44584512,+#_12f79e98bf506e5bdecd96d798798326 | p2@KLF17 |
| 2.81e-56 | FFCP PHASE1:Mm9::chr12:31775417..31775434,-#_b205c8c77b42489794c198daa0b4037e | p@chr12:31775417..31775434, - |
| 2.81e-56 | FFCP PHASE2:Mm9::chr12:31775417..31775434,-#_b205c8c77b42489794c198daa0b4037e | p@chr12:31775417..31775434, - |
| 2.81e-56 | FFCP PHASE1:Mm9::chrX:71422591..71422607,+#_b205c8c77b42489794c198daa0b4037e | p1@Tktl1 |
| 2.81e-56 | FFCP PHASE2:Mm9::chrX:71422591..71422607,+#_b205c8c77b42489794c198daa0b4037e | p1@Tktl1 |
| 4.4e-56 | FFCP PHASE1:Mm9::chr5:26334211..26334241,+#_329b9b30af7420e876651b0887c22878 | p@chr5:26334211..26334241, + |
| 4.4e-56 | FFCP PHASE2:Mm9::chr5:26334211..26334241,+#_329b9b30af7420e876651b0887c22878 | p@chr5:26334211..26334241, + |
| 6.2e-56 | FFCP PHASE1:Mm9::chr16:37843615..37843636,-#_425011f8dcc347e96c526bf20c45591f | p@chr16:37843615..37843636, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chrX:93160409..93160432,-#_425011f8dcc347e96c526bf20c45591f | p@chrX:93160409..93160432, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr2:25702844..25702859,-#_425011f8dcc347e96c526bf20c45591f | p1@Sohlh1 |
| 6.2e-56 | FFCP PHASE1:Mm9::chr2:25702844..25702859,-#_425011f8dcc347e96c526bf20c45591f | p1@Sohlh1 |
| 6.2e-56 | FFCP PHASE2:Mm9::chr11:69431224..69431241,-#_425011f8dcc347e96c526bf20c45591f | p@chr11:69431224..69431241, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr8:26314366..26314395,-#_425011f8dcc347e96c526bf20c45591f | p@chr8:26314366..26314395, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr8:26314366..26314395,-#_425011f8dcc347e96c526bf20c45591f | p@chr8:26314366..26314395, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chr16:37843615..37843636,-#_425011f8dcc347e96c526bf20c45591f | p@chr16:37843615..37843636, - |
| 6.2e-56 | FFCP PHASE1:Mm9::chr11:69431224..69431241,-#_425011f8dcc347e96c526bf20c45591f | p@chr11:69431224..69431241, - |
| 6.2e-56 | FFCP PHASE2:Mm9::chrX:93160409..93160432,-#_425011f8dcc347e96c526bf20c45591f | p@chrX:93160409..93160432, - |
| 1.38e-55 | FFCP PHASE2:Mm9::chr15:88813324..88813392,+#_3e12bbab3bb5db3ea43224294778bdc9 | p1@Mov10l1 |
| 1.38e-55 | FFCP PHASE1:Mm9::chr15:88813324..88813392,+#_3e12bbab3bb5db3ea43224294778bdc9 | p1@Mov10l1 |
| 3.93e-55 | FFCP PHASE2:Mm9::chr3:102740016..102740030,-#_efcad37d3f5917726fa97cc9cc0d998c | p1@Sycp1 |
| 3.93e-55 | FFCP PHASE1:Mm9::chr3:102740016..102740030,-#_efcad37d3f5917726fa97cc9cc0d998c | p1@Sycp1 |
| 3.32e-54 | FFCP PHASE1:Mm9::chr1:168168856..168168893,-#_e2e993430b5da9e8d3b04ac5883d0158 | p1@Mael |
| 3.32e-54 | FFCP PHASE2:Mm9::chr1:168168856..168168893,-#_e2e993430b5da9e8d3b04ac5883d0158 | p1@Mael |
| 5.91e-54 | FFCP PHASE1:Mm9::chr15:3253521..3253569,-#_7ec492e183cf3bca5de77f64ff2daa79 | p1@Ccdc152 |
| 5.91e-54 | FFCP PHASE2:Mm9::chr15:3253521..3253569,-#_7ec492e183cf3bca5de77f64ff2daa79 | p1@Ccdc152 |
| 7.21e-54 | FFCP PHASE2:Mm9::chr6:18059063..18059084,-#_d6bf301764c1ebe6cd5b954d7268f719 | p2@Asz1 |
| 7.21e-54 | FFCP PHASE1:Mm9::chr6:18059063..18059084,-#_d6bf301764c1ebe6cd5b954d7268f719 | p2@Asz1 |
| 3.37e-53 | FFCP PHASE2:Mm9::chr5:135825867..135825910,-#_d9dfa7c2e403c6098038775607f10a15 | p1@Fkbp6 |
| 3.37e-53 | FFCP PHASE1:Mm9::chr5:135825867..135825910,-#_d9dfa7c2e403c6098038775607f10a15 | p1@Fkbp6 |
| 5.2e-53 | FFCP PHASE2:Mm9::chr13:24026079..24026094,-#_eafa2e1feac89a617d5405cb2b934877 | p1@Hist1h2ba |
| 5.2e-53 | FFCP PHASE1:Mm9::chr13:24026079..24026094,-#_eafa2e1feac89a617d5405cb2b934877 | p1@Hist1h2ba |
| 7.61e-53 | FFCP PHASE2:Mm9::chr7:149469129..149469146,+#_b4bf2398c7c1e48740e5d0c63b771e76 | p@chr7:149469129..149469146, + |
| 7.61e-53 | FFCP PHASE1:Mm9::chr7:149469129..149469146,+#_b4bf2398c7c1e48740e5d0c63b771e76 | p@chr7:149469129..149469146, + |
| 7.61e-53 | FFCP PHASE2:Mm9::chr7:147143936..147143939,-#_b4bf2398c7c1e48740e5d0c63b771e76 | p1@Mir202 |
| 7.61e-53 | FFCP PHASE1:Mm9::chr7:147143936..147143939,-#_b4bf2398c7c1e48740e5d0c63b771e76 | p1@Mir202 |
| 1.62e-52 | FFCP PHASE1:Mm9::chr15:102277099..102277126,+#_36d302a9975a1d40fd3164c0d003af6e | p@chr15:102277099..102277126, + |
| 1.62e-52 | FFCP PHASE2:Mm9::chr15:102277099..102277126,+#_36d302a9975a1d40fd3164c0d003af6e | p@chr15:102277099..102277126, + |
| 1.8e-52 | FFCP PHASE2:Mm9::chr12:105339370..105339379,+#_faa9eeed4454be8299b32c8273845d60 | p2@Serpina5 |
| 1.8e-52 | FFCP PHASE1:Mm9::chr12:105339370..105339379,+#_faa9eeed4454be8299b32c8273845d60 | p2@Serpina5 |
| 2.46e-52 | FFCP PHASE2:Mm9::chr13:24026303..24026308,+#_85e1919dce0370614d948e54a3c7e837 | p1@Hist1h2aa |
| 2.46e-52 | FFCP PHASE1:Mm9::chr13:24026303..24026308,+#_85e1919dce0370614d948e54a3c7e837 | p1@Hist1h2aa |
| 2.69e-52 | FFCP PHASE1:Mm9::chr3:95363593..95363613,+#_ffb32c5fa5b9e7e7495a22ff907273a0 | p1@Hormad1 |
| 2.69e-52 | FFCP PHASE2:Mm9::chr3:95363593..95363613,+#_ffb32c5fa5b9e7e7495a22ff907273a0 | p1@Hormad1 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr19:25580226..25580261,+#_3b875d5b3c02d8041b39d24b04d306a7 | p2@Dmrt1 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr2:148660852..148660861,+#_3b875d5b3c02d8041b39d24b04d306a7 | p3@Cst9 |
| 1.97e-51 | FFCP PHASE1:Mm9::chr8:26314291..26314315,-#_3b875d5b3c02d8041b39d24b04d306a7 | p@chr8:26314291..26314315, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr19:25580226..25580261,+#_3b875d5b3c02d8041b39d24b04d306a7 | p2@Dmrt1 |
| 1.97e-51 | FFCP PHASE2:Mm9::chr8:26314291..26314315,-#_3b875d5b3c02d8041b39d24b04d306a7 | p@chr8:26314291..26314315, - |
| 1.97e-51 | FFCP PHASE1:Mm9::chr2:148660852..148660861,+#_3b875d5b3c02d8041b39d24b04d306a7 | p3@Cst9 |
| 2.47e-51 | FFCP PHASE2:Mm9::chrX:131499234..131499265,-#_10e7ae9dae66e809011bafa4ad1b6a5c | p1@Nxf2 |
| 2.47e-51 | FFCP PHASE1:Mm9::chrX:131499234..131499265,-#_10e7ae9dae66e809011bafa4ad1b6a5c | p1@Nxf2 |
| 4.3e-51 | FFCP PHASE2:Mm9::chr9:50369410..50369421,-#_d4fd61dcee9198f506e668ff3170a79c | p2@Tex12 |
| 4.3e-51 | FFCP PHASE1:Mm9::chr9:50369410..50369421,-#_d4fd61dcee9198f506e668ff3170a79c | p2@Tex12 |
| 5.44e-51 | FFCP PHASE1:Mm9::chr14:70829178..70829221,-#_9bb9f90dc942435e82358fc530fd0a97 | p1@Piwil2 |
| 5.44e-51 | FFCP PHASE2:Mm9::chr14:70829178..70829221,-#_9bb9f90dc942435e82358fc530fd0a97 | p1@Piwil2 |
| 6.54e-51 | FFCP PHASE2:Mm9::chr10:127031444..127031494,-#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr10:127031444..127031494, - |
| 6.54e-51 | FFCP PHASE1:Mm9::chr10:127031444..127031494,-#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr10:127031444..127031494, - |
| 6.54e-51 | FFCP PHASE2:Mm9::chr11:69431571..69431587,-#_01c2b36a773a8781b1ef19e2e257fb41 | p3@Shbg |
| 6.54e-51 | FFCP PHASE1:Mm9::chr19:25580353..25580364,+#_01c2b36a773a8781b1ef19e2e257fb41 | p4@Dmrt1 |
| 6.54e-51 | FFCP PHASE1:Mm9::chr17:89600024..89600037,-#_01c2b36a773a8781b1ef19e2e257fb41 | p2@Fshr |
| 6.54e-51 | FFCP PHASE1:Mm9::chr2:31332380..31332388,+#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr2:31332380..31332388, + |
| 6.54e-51 | FFCP PHASE2:Mm9::chr6:83138985..83138996,+#_01c2b36a773a8781b1ef19e2e257fb41 | p10@Dctn1 |
| 6.54e-51 | FFCP PHASE1:Mm9::chr6:83138985..83138996,+#_01c2b36a773a8781b1ef19e2e257fb41 | p10@Dctn1 |
| 6.54e-51 | FFCP PHASE1:Mm9::chr11:69431091..69431096,-#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr11:69431091..69431096, - |
| 6.54e-51 | FFCP PHASE2:Mm9::chr19:25580353..25580364,+#_01c2b36a773a8781b1ef19e2e257fb41 | p4@Dmrt1 |
| 6.54e-51 | FFCP PHASE1:Mm9::chr11:69431571..69431587,-#_01c2b36a773a8781b1ef19e2e257fb41 | p3@Shbg |
| 6.54e-51 | FFCP PHASE2:Mm9::chr17:89600024..89600037,-#_01c2b36a773a8781b1ef19e2e257fb41 | p2@Fshr |
| 6.54e-51 | FFCP PHASE2:Mm9::chr11:69431091..69431096,-#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr11:69431091..69431096, - |
| 6.54e-51 | FFCP PHASE2:Mm9::chr2:31332380..31332388,+#_01c2b36a773a8781b1ef19e2e257fb41 | p@chr2:31332380..31332388, + |
| 7.2e-51 | FFCP PHASE1:Mm9::chr9:50369387..50369406,-#_a6a194e5eb6a144736c02fe02ffd0cb9 | p1@Tex12 |
| 7.2e-51 | FFCP PHASE2:Mm9::chr9:50369387..50369406,-#_a6a194e5eb6a144736c02fe02ffd0cb9 | p1@Tex12 |
| 1.26e-50 | FFCP PHASE2:Mm9::chr18:47081451..47081490,+#_1d16437fdff2b0bca4b5604ef629e559 | p1@Gm949 |
| 1.26e-50 | FFCP PHASE1:Mm9::chr18:47081451..47081490,+#_1d16437fdff2b0bca4b5604ef629e559 | p1@Gm949 |
| 1.62e-50 | FFCP PHASE1:Mm9::chr17:50432917..50432931,-#_47d60b9b8f6f639379e5990658f2ccf9 | p1@Dazl |
| 1.62e-50 | FFCP PHASE2:Mm9::chr17:50432917..50432931,-#_47d60b9b8f6f639379e5990658f2ccf9 | p1@Dazl |
| 3.51e-50 | FFCP PHASE1:Mm9::chr15:89240661..89240702,-#_b809dc5a65f644f23fbe20081304e033 | p1@Syce3 |
| 3.51e-50 | FFCP PHASE2:Mm9::chr15:89240661..89240702,-#_b809dc5a65f644f23fbe20081304e033 | p1@Syce3 |
| 3.85e-50 | FFCP PHASE2:Mm9::chr1:36739960..36739999,-#_031427c5275ce87460fe2ae58672743a | p1@Fam178b |
| 3.85e-50 | FFCP PHASE1:Mm9::chr1:36739960..36739999,-#_031427c5275ce87460fe2ae58672743a | p1@Fam178b |
| 5.34e-50 | FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_d9d74ff026d726dd1238eb49538a34fd | p1@NR5A1 |
| 5.34e-50 | FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_d9d74ff026d726dd1238eb49538a34fd | p1@NR5A1 |
| 3.59e-49 | FFCP PHASE2:Mm9::chr7:20074394..20074416,+#_963c7c636033c8ba65128db67422bd81 | p1@Exoc3l2 |
| 3.59e-49 | FFCP PHASE1:Mm9::chr7:20074394..20074416,+#_963c7c636033c8ba65128db67422bd81 | p1@Exoc3l2 |
