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|namespace=
|namespace=
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|def="A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
|xref=ZFA:0005289
|xref=TAO:0005289;;ZFA:0005289
|is_a=UBERON:0000058;;UBERON:0004120;;UBERON:0006554
|is_a=UBERON:0000058;;UBERON:0006554
|synonym=
|synonym=
|comment=in ZFA this is defined as part of mesonephros
|comment=in ZFA this is defined as part of mesonephros
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|obo_creation_date=
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0002113
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:07, 26 June 2012

Name:renal duct
Definition:"A tube in the kidney that collect and transport urine." [ZFIN:ZDB-PUB-071029-9]
Xrefs:
links:

TAO:0005289

ZFA:0005289
Comments:in ZFA this is defined as part of mesonephros

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000058(duct),UBERON:0006554(urinary system structure)



Children

is a:UBERON:0009201 (nephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006553 (renal duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_c996e4a6607e53096692777a1b938268p4@Spink12
3.28e-58FFCP PHASE2:Mm9::chr11:101958876..101958883,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:101958876..101958883, +
3.28e-58FFCP PHASE1:Mm9::chr1:89596972..89596981,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89596972..89596981, +
3.28e-58FFCP PHASE2:Mm9::chr16:22504758..22504766,-#_9b3409e528ac533dfd8475c41e23287dp@chr16:22504758..22504766, -
3.28e-58FFCP PHASE2:Mm9::chr9:70761931..70761971,+#_9b3409e528ac533dfd8475c41e23287dp@chr9:70761931..70761971, +
3.28e-58FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:11079838..11079844, +
3.28e-58FFCP PHASE2:Mm9::chr14:51677141..51677148,-#_9b3409e528ac533dfd8475c41e23287dp7@Rnase12
3.28e-58FFCP PHASE1:Mm9::chrX:164787162..164787188,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:164787162..164787188, -
3.28e-58FFCP PHASE2:Mm9::chrX:50280126..50280140,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:50280126..50280140, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379437..31379448,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379437..31379448, +
3.28e-58FFCP PHASE2:Mm9::chr7:151928014..151928021,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:151928014..151928021, +
3.28e-58FFCP PHASE1:Mm9::chr11:53955299..53955306,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:53955299..53955306, +
3.28e-58FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:23308182..23308185, +
3.28e-58FFCP PHASE1:Mm9::chr14:51676936..51676963,-#_9b3409e528ac533dfd8475c41e23287dp6@Rnase12
3.28e-58FFCP PHASE2:Mm9::chr2:25678985..25679033,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:25678985..25679033, +
3.28e-58FFCP PHASE2:Mm9::chr14:69143309..69143319,-#_9b3409e528ac533dfd8475c41e23287dp@chr14:69143309..69143319, -
3.28e-58FFCP PHASE1:Mm9::chr15:83143938..83143953,-#_9b3409e528ac533dfd8475c41e23287dp@chr15:83143938..83143953, -
3.28e-58FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:101958844..101958851, -
3.28e-58FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496260..130496269, -
3.28e-58FFCP PHASE2:Mm9::chrX:75798132..75798152,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:75798132..75798152, -
3.28e-58FFCP PHASE1:Mm9::chr9:26785438..26785446,-#_9b3409e528ac533dfd8475c41e23287dp3@Acad8
3.28e-58FFCP PHASE1:Mm9::chr8:23057222..23057234,+#_9b3409e528ac533dfd8475c41e23287dp1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr7:31507623..31507631,+#_9b3409e528ac533dfd8475c41e23287dp4@Atp4a
3.28e-58FFCP PHASE1:Mm9::chr17:73221034..73221051,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:73221034..73221051, +
3.28e-58FFCP PHASE1:Mm9::chr13:52712744..52712754,+#_9b3409e528ac533dfd8475c41e23287dp@chr13:52712744..52712754, +
3.28e-58FFCP PHASE2:Mm9::chr17:35249011..35249020,-#_9b3409e528ac533dfd8475c41e23287dp@chr17:35249011..35249020, -
3.28e-58FFCP PHASE1:Mm9::chr6:83487114..83487124,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:83487114..83487124, -
3.28e-58FFCP PHASE1:Mm9::chr14:69143309..69143319,-#_9b3409e528ac533dfd8475c41e23287dp@chr14:69143309..69143319, -
3.28e-58FFCP PHASE1:Mm9::chr10:52101299..52101305,+#_9b3409e528ac533dfd8475c41e23287dp@chr10:52101299..52101305, +
3.28e-58FFCP PHASE2:Mm9::chr9:26727675..26727681,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26727675..26727681, -
3.28e-58FFCP PHASE2:Mm9::chr2:164434157..164434162,-#_9b3409e528ac533dfd8475c41e23287dp@chr2:164434157..164434162, -
3.28e-58FFCP PHASE2:Mm9::chr14:52608712..52608739,+#_9b3409e528ac533dfd8475c41e23287dp11@Arhgef40
3.28e-58FFCP PHASE2:Mm9::chr12:110132148..110132154,+#_9b3409e528ac533dfd8475c41e23287dp3@Wdr25
3.28e-58FFCP PHASE1:Mm9::chr15:75329148..75329155,+#_9b3409e528ac533dfd8475c41e23287dp@chr15:75329148..75329155, +
3.28e-58FFCP PHASE2:Mm9::chr14:63630486..63630493,+#_9b3409e528ac533dfd8475c41e23287dp5@Defb43
3.28e-58FFCP PHASE1:Mm9::chrX:10488683..10488691,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:10488683..10488691, +
3.28e-58FFCP PHASE1:Mm9::chr9:26719400..26719404,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26719400..26719404, -
3.28e-58FFCP PHASE2:Mm9::chr18:46301295..46301302,-#_9b3409e528ac533dfd8475c41e23287dp@chr18:46301295..46301302, -
3.28e-58FFCP PHASE2:Mm9::chr1:168436322..168436326,-#_9b3409e528ac533dfd8475c41e23287dp@chr1:168436322..168436326, -
3.28e-58FFCP PHASE2:Mm9::chr1:155697874..155697885,-#_9b3409e528ac533dfd8475c41e23287dp@chr1:155697874..155697885, -
3.28e-58FFCP PHASE1:Mm9::chr13:21381141..21381155,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21381141..21381155, -
3.28e-58FFCP PHASE1:Mm9::chr13:21385325..21385329,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21385325..21385329, -
3.28e-58FFCP PHASE2:Mm9::chr16:43230846..43230884,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:43230846..43230884, +
3.28e-58FFCP PHASE2:Mm9::chr8:25706083..25706089,-#_9b3409e528ac533dfd8475c41e23287dp4@Ido1
3.28e-58FFCP PHASE1:Mm9::chr1:90368977..90368987,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90368977..90368987, +
3.28e-58FFCP PHASE1:Mm9::chr14:66521865..66521876,+#_9b3409e528ac533dfd8475c41e23287dp@chr14:66521865..66521876, +
3.28e-58FFCP PHASE1:Mm9::chr18:44264128..44264135,+#_9b3409e528ac533dfd8475c41e23287dp5@Spink12
3.28e-58FFCP PHASE2:Mm9::chr10:116399500..116399516,+#_9b3409e528ac533dfd8475c41e23287dp@chr10:116399500..116399516, +
3.28e-58FFCP PHASE2:Mm9::chrX:130496260..130496269,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:130496260..130496269, -
3.28e-58FFCP PHASE2:Mm9::chr8:107073888..107073914,-#_9b3409e528ac533dfd8475c41e23287dp@chr8:107073888..107073914, -
3.28e-58FFCP PHASE2:Mm9::chr17:73221034..73221051,+#_9b3409e528ac533dfd8475c41e23287dp@chr17:73221034..73221051, +
3.28e-58FFCP PHASE2:Mm9::chr5:31379972..31379981,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379972..31379981, +
3.28e-58FFCP PHASE1:Mm9::chr19:17585885..17585901,-#_9b3409e528ac533dfd8475c41e23287dp@chr19:17585885..17585901, -
3.28e-58FFCP PHASE1:Mm9::chr14:52542711..52542716,-#_9b3409e528ac533dfd8475c41e23287dp2@Rnase13
3.28e-58FFCP PHASE2:Mm9::chr1:90155722..90155743,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:90155722..90155743, +
3.28e-58FFCP PHASE1:Mm9::chr7:151927980..151927988,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:151927980..151927988, +
3.28e-58FFCP PHASE1:Mm9::chr6:147624258..147624285,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:147624258..147624285, -
3.28e-58FFCP PHASE2:Mm9::chr16:25752183..25752203,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:25752183..25752203, +
3.28e-58FFCP PHASE2:Mm9::chr11:101959282..101959299,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:101959282..101959299, -
3.28e-58FFCP PHASE1:Mm9::chr16:22504758..22504766,-#_9b3409e528ac533dfd8475c41e23287dp@chr16:22504758..22504766, -
3.28e-58FFCP PHASE2:Mm9::chr1:156048695..156048707,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:156048695..156048707, +
3.28e-58FFCP PHASE2:Mm9::chr16:22547027..22547063,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:22547027..22547063, +
3.28e-58FFCP PHASE2:Mm9::chr9:70779586..70779596,+#_9b3409e528ac533dfd8475c41e23287dp@chr9:70779586..70779596, +
3.28e-58FFCP PHASE2:Mm9::chr7:6204391..6204398,+#_9b3409e528ac533dfd8475c41e23287dp2@Gm6792
3.28e-58FFCP PHASE2:Mm9::chr12:114385720..114385732,-#_9b3409e528ac533dfd8475c41e23287dp@chr12:114385720..114385732, -
3.28e-58FFCP PHASE1:Mm9::chr12:16663110..16663116,+#_9b3409e528ac533dfd8475c41e23287dp3@Ntsr2
3.28e-58FFCP PHASE1:Mm9::chrX:50280126..50280140,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:50280126..50280140, +
3.28e-58FFCP PHASE1:Mm9::chr5:31379845..31379855,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379845..31379855, +
3.28e-58FFCP PHASE1:Mm9::chr2:164499572..164499580,-#_9b3409e528ac533dfd8475c41e23287dp2@Wfdc11
3.28e-58FFCP PHASE2:Mm9::chr14:66589365..66589371,+#_9b3409e528ac533dfd8475c41e23287dp19@Clu
3.28e-58FFCP PHASE2:Mm9::chr5:31379377..31379384,+#_9b3409e528ac533dfd8475c41e23287dp@chr5:31379377..31379384, +
3.28e-58FFCP PHASE2:Mm9::chr16:92995710..92995753,+#_9b3409e528ac533dfd8475c41e23287dp@chr16:92995710..92995753, +
3.28e-58FFCP PHASE2:Mm9::chr19:17591760..17591765,+#_9b3409e528ac533dfd8475c41e23287dp@chr19:17591760..17591765, +
3.28e-58FFCP PHASE1:Mm9::chr5:66513886..66513897,-#_9b3409e528ac533dfd8475c41e23287dp@chr5:66513886..66513897, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302836..152302841,+#_9b3409e528ac533dfd8475c41e23287dp6@Defb20
3.28e-58FFCP PHASE1:Mm9::chr13:21379098..21379104,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379098..21379104, -
3.28e-58FFCP PHASE1:Mm9::chr8:19141429..19141440,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:19141429..19141440, +
3.28e-58FFCP PHASE2:Mm9::chr1:89597660..89597668,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:89597660..89597668, +
3.28e-58FFCP PHASE2:Mm9::chr9:65941913..65941923,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:65941913..65941923, -
3.28e-58FFCP PHASE1:Mm9::chr2:25349488..25349492,-#_9b3409e528ac533dfd8475c41e23287dp6@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr2:160573065..160573077,+#_9b3409e528ac533dfd8475c41e23287dp@chr2:160573065..160573077, +
3.28e-58FFCP PHASE1:Mm9::chr12:103896102..103896116,-#_9b3409e528ac533dfd8475c41e23287dp@chr12:103896102..103896116, -
3.28e-58FFCP PHASE1:Mm9::chr11:101959159..101959163,+#_9b3409e528ac533dfd8475c41e23287dp@chr11:101959159..101959163, +
3.28e-58FFCP PHASE1:Mm9::chr8:25706249..25706254,+#_9b3409e528ac533dfd8475c41e23287dp@chr8:25706249..25706254, +
3.28e-58FFCP PHASE1:Mm9::chr7:6204391..6204398,+#_9b3409e528ac533dfd8475c41e23287dp2@Gm6792
3.28e-58FFCP PHASE1:Mm9::chr12:110131610..110131621,-#_9b3409e528ac533dfd8475c41e23287dp11@Wars
3.28e-58FFCP PHASE2:Mm9::chrX:10488683..10488691,+#_9b3409e528ac533dfd8475c41e23287dp@chrX:10488683..10488691, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379322..21379338,-#_9b3409e528ac533dfd8475c41e23287dp@chr13:21379322..21379338, -
3.28e-58FFCP PHASE2:Mm9::chr9:35651807..35651818,-#_9b3409e528ac533dfd8475c41e23287dp3@9230110F15Rik
3.28e-58FFCP PHASE1:Mm9::chr3:103650758..103650778,+#_9b3409e528ac533dfd8475c41e23287dp@chr3:103650758..103650778, +
3.28e-58FFCP PHASE2:Mm9::chr6:18338054..18338077,-#_9b3409e528ac533dfd8475c41e23287dp@chr6:18338054..18338077, -
3.28e-58FFCP PHASE2:Mm9::chr9:26731771..26731780,-#_9b3409e528ac533dfd8475c41e23287dp@chr9:26731771..26731780, -
3.28e-58FFCP PHASE2:Mm9::chr7:109379335..109379338,+#_9b3409e528ac533dfd8475c41e23287dp21@Pgap2
3.28e-58FFCP PHASE1:Mm9::chr7:148445639..148445665,+#_9b3409e528ac533dfd8475c41e23287dp@chr7:148445639..148445665, +
3.28e-58FFCP PHASE2:Mm9::chr1:192816674..192816714,+#_9b3409e528ac533dfd8475c41e23287dp@chr1:192816674..192816714, +
3.28e-58FFCP PHASE1:Mm9::chr2:148676901..148676906,-#_9b3409e528ac533dfd8475c41e23287dp8@9230104L09Rik
3.28e-58FFCP PHASE1:Mm9::chr11:96150839..96150842,-#_9b3409e528ac533dfd8475c41e23287dp@chr11:96150839..96150842, -
3.28e-58FFCP PHASE2:Mm9::chr2:148676901..148676906,-#_9b3409e528ac533dfd8475c41e23287dp8@9230104L09Rik
3.28e-58FFCP PHASE1:Mm9::chrX:12571771..12571780,-#_9b3409e528ac533dfd8475c41e23287dp@chrX:12571771..12571780, -

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