UBERON:0005419: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 4: | Line 4: | ||
|namespace= | |namespace= | ||
|def="A limb bud that develops into a forelimb or pectoral fin." [OBOL:automatic] | |def="A limb bud that develops into a forelimb or pectoral fin." [OBOL:automatic] | ||
|xref=VHOG:0001259;;ZFA:0000141 | |xref=TAO:0000141;;VHOG:0001259;;ZFA:0000141 | ||
|is_a=UBERON:0004357 | |is_a=UBERON:0004357 | ||
|synonym= | |synonym= | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset= | |subset= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Fin bud that develops into the pectoral fin.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 17:06, 26 June 2012
| Name: | forelimb/pectoral fin bud | ||
|---|---|---|---|
| Definition: | "A limb bud that develops into a forelimb or pectoral fin." [OBOL:automatic] | ||
| Xrefs: |
| ||
| Comments: | at this time we have no need to name a more specific 'pectoral fin bud' class, but we may in future |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004357(paired limb/fin bud) |
|---|
Children
| is a: | UBERON:0005417 (forelimb bud) |
|---|---|
| develops from: | UBERON:0004710 (pectoral appendage) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005419 (forelimb/pectoral fin bud), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.33e-86 | FFCP PHASE1:Mm9::chr2:74499300..74499309,-#_d68060ce49e5d2f83fc1c2e3818de8a2 | p5@Evx2 |
| 1.33e-86 | FFCP PHASE2:Mm9::chr2:74499300..74499309,-#_d68060ce49e5d2f83fc1c2e3818de8a2 | p5@Evx2 |
| 2.4e-74 | FFCP PHASE2:Mm9::chr5:120256413..120256428,-#_7821bb11feabd287b40f52e73911046b | p@chr5:120256413..120256428, - |
| 2.4e-74 | FFCP PHASE1:Mm9::chr15:51484092..51484121,-#_7821bb11feabd287b40f52e73911046b | p@chr15:51484092..51484121, - |
| 2.4e-74 | FFCP PHASE1:Mm9::chr5:120256413..120256428,-#_7821bb11feabd287b40f52e73911046b | p@chr5:120256413..120256428, - |
| 2.4e-74 | FFCP PHASE2:Mm9::chr15:51484092..51484121,-#_7821bb11feabd287b40f52e73911046b | p@chr15:51484092..51484121, - |
| 2.4e-74 | FFCP PHASE2:Mm9::chr2:165983686..165983720,-#_7821bb11feabd287b40f52e73911046b | p@chr2:165983686..165983720, - |
| 2.4e-74 | FFCP PHASE1:Mm9::chr2:165983686..165983720,-#_7821bb11feabd287b40f52e73911046b | p@chr2:165983686..165983720, - |
| 1.21e-61 | FFCP PHASE2:Mm9::chr2:74505324..74505330,+#_5ffcb35a1bb5f3efc5a488045e23133c | p@chr2:74505324..74505330, + |
| 1.21e-61 | FFCP PHASE1:Mm9::chr2:74505324..74505330,+#_5ffcb35a1bb5f3efc5a488045e23133c | p@chr2:74505324..74505330, + |
| 2.24e-61 | FFCP PHASE2:Mm9::chr2:74506264..74506286,+#_8c61720794a5509a7c8fcb2ffd410569 | p1@Hoxd13 |
| 2.24e-61 | FFCP PHASE1:Mm9::chr2:74506264..74506286,+#_8c61720794a5509a7c8fcb2ffd410569 | p1@Hoxd13 |
| 3.63e-52 | FFCP PHASE1:Mm9::chr2:74513064..74513089,+#_2e77e1c75e0a0067d4e8e601d91097fa | p2@Hoxd12 |
| 3.63e-52 | FFCP PHASE2:Mm9::chr2:74513064..74513089,+#_2e77e1c75e0a0067d4e8e601d91097fa | p2@Hoxd12 |
| 4.62e-52 | FFCP PHASE1:Mm9::chr2:74499251..74499258,-#_d9cdfafed23c68be8eebef66bcebd316 | p4@Evx2 |
| 4.62e-52 | FFCP PHASE2:Mm9::chr2:74499251..74499258,-#_d9cdfafed23c68be8eebef66bcebd316 | p4@Evx2 |
| 5.88e-52 | FFCP PHASE2:Mm9::chr2:33574246..33574257,-#_f94cb03d5c9564cfdf410315a0e0f4d2 | p3@ENSMUST00000130532 |
| 5.88e-52 | FFCP PHASE1:Mm9::chr2:33574246..33574257,-#_f94cb03d5c9564cfdf410315a0e0f4d2 | p3@ENSMUST00000130532 |
| 5.28e-50 | FFCP PHASE2:Mm9::chr2:74521516..74521525,+#_cc485d38a5ffa759c0176e5abddabc6f | p1@ENSMUST00000136302 |
| 5.28e-50 | FFCP PHASE1:Mm9::chr2:74521516..74521525,+#_cc485d38a5ffa759c0176e5abddabc6f | p1@ENSMUST00000136302 |
| 9.21e-50 | FFCP PHASE1:Mm9::chr6:51009701..51009744,-#_8957fe04ee01464d3490074e07808cab | p@chr6:51009701..51009744, - |
| 9.21e-50 | FFCP PHASE2:Mm9::chr6:51009701..51009744,-#_8957fe04ee01464d3490074e07808cab | p@chr6:51009701..51009744, - |
| 2.92e-48 | FFCP PHASE1:Mm9::chr10:97069737..97069749,+#_df502feb9e50a3bc0a6580d268b3f123 | p5@Kera |
| 2.92e-48 | FFCP PHASE2:Mm9::chr10:97069737..97069749,+#_df502feb9e50a3bc0a6580d268b3f123 | p5@Kera |
| 4.71e-48 | FFCP PHASE1:Mm9::chr6:52210816..52210831,-#_0f738be9030074d35ca11a359b470840 | p2@Hoxa13 |
| 4.71e-48 | FFCP PHASE2:Mm9::chr6:52210816..52210831,-#_0f738be9030074d35ca11a359b470840 | p2@Hoxa13 |
| 6.47e-48 | FFCP PHASE2:Mm9::chr2:74513149..74513159,+#_323d3e0cd4741b14b397e22eb00c3837 | p@chr2:74513149..74513159, + |
| 6.47e-48 | FFCP PHASE1:Mm9::chr2:74513149..74513159,+#_323d3e0cd4741b14b397e22eb00c3837 | p@chr2:74513149..74513159, + |
| 1.4e-44 | FFCP PHASE1:Mm9::chr1:165288513..165288518,+#_bb857a93bb510604d0e697b206e0c4d3 | p@chr1:165288513..165288518, + |
| 1.4e-44 | FFCP PHASE2:Mm9::chr1:165288513..165288518,+#_bb857a93bb510604d0e697b206e0c4d3 | p@chr1:165288513..165288518, + |
| 2.07e-41 | FFCP PHASE2:Mm9::chr1:164064835..164064864,-#_1eee094029911cc0f0574d0de9796f46 | p3@Dnm3 |
| 2.07e-41 | FFCP PHASE1:Mm9::chr1:164064835..164064864,-#_1eee094029911cc0f0574d0de9796f46 | p3@Dnm3 |
| 2.91e-40 | FFCP PHASE2:Mm9::chr2:33574267..33574279,-#_68f9e1b5df576eb64f73589d868f5782 | p1@ENSMUST00000130532 |
| 2.91e-40 | FFCP PHASE1:Mm9::chr2:33574267..33574279,-#_68f9e1b5df576eb64f73589d868f5782 | p1@ENSMUST00000130532 |
| 3.67e-40 | FFCP PHASE2:Mm9::chr2:33574309..33574319,-#_8ea4ae74fd61a52076699254b3e4b533 | p4@ENSMUST00000130532 |
| 3.67e-40 | FFCP PHASE1:Mm9::chr2:33574309..33574319,-#_8ea4ae74fd61a52076699254b3e4b533 | p4@ENSMUST00000130532 |
| 5.46e-39 | FFCP PHASE2:Mm9::chr6:52195000..52195013,+#_18e87ac563e1ac269e3fd566484a6885 | p3@Hoxa11as |
| 5.46e-39 | FFCP PHASE1:Mm9::chr6:52195000..52195013,+#_18e87ac563e1ac269e3fd566484a6885 | p3@Hoxa11as |
| 6.59e-38 | FFCP PHASE1:Mm9::chr2:74512009..74512012,+#_54af53987cb80481fa22570bb8ac3b55 | p@chr2:74512009..74512012, + |
| 6.59e-38 | FFCP PHASE2:Mm9::chr2:74512009..74512012,+#_54af53987cb80481fa22570bb8ac3b55 | p@chr2:74512009..74512012, + |
| 1.94e-35 | FFCP PHASE2:Mm9::chr2:33496847..33496857,+#_cc951433ec62abf95666707856fd4eed | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 1.94e-35 | FFCP PHASE1:Mm9::chr2:33496847..33496857,+#_cc951433ec62abf95666707856fd4eed | p3@ENSMUST00000147294, p3@uc008jia.1 |
| 9.74e-35 | FFCP PHASE2:Mm9::chr13:89680110..89680115,+#_3d738b2604cd14a2596d7d0fabe04068 | p6@Hapln1 |
| 9.74e-35 | FFCP PHASE1:Mm9::chr13:89680110..89680115,+#_3d738b2604cd14a2596d7d0fabe04068 | p6@Hapln1 |
| 2.95e-34 | FFCP PHASE1:Mm9::chr9:96754986..96754989,-#_42dd67c239477eb9725a1cfdce0021fd | p3@Acpl2 |
| 2.95e-34 | FFCP PHASE2:Mm9::chr9:96754986..96754989,-#_42dd67c239477eb9725a1cfdce0021fd | p3@Acpl2 |
| 6.28e-34 | FFCP PHASE2:Mm9::chr8:23734491..23734495,+#_477310b1e609626c4ad6f2bf62b4f2c2 | p1@Dkk4 |
| 6.28e-34 | FFCP PHASE1:Mm9::chr8:23734491..23734495,+#_477310b1e609626c4ad6f2bf62b4f2c2 | p1@Dkk4 |
| 7.62e-34 | FFCP PHASE2:Mm9::chr2:155770985..155770995,-#_552e0d7fb9ac92fff213388c5427c050 | p2@Gdf5 |
| 7.62e-34 | FFCP PHASE1:Mm9::chr2:155770985..155770995,-#_552e0d7fb9ac92fff213388c5427c050 | p2@Gdf5 |
| 2.0e-33 | FFCP PHASE1:Mm9::chr18:80910310..80910329,-#_3fa0e0017c654d31966872b162a60147 | p@chr18:80910310..80910329, - |
| 2.0e-33 | FFCP PHASE2:Mm9::chr18:80910310..80910329,-#_3fa0e0017c654d31966872b162a60147 | p@chr18:80910310..80910329, - |
| 1.89e-32 | FFCP PHASE2:Mm9::chr6:52210774..52210787,-#_2b361a45f4944d175d2abc8afe8959f3 | p1@Hoxa13 |
| 1.89e-32 | FFCP PHASE1:Mm9::chr6:52210774..52210787,-#_2b361a45f4944d175d2abc8afe8959f3 | p1@Hoxa13 |
| 6.43e-32 | FFCP PHASE2:Mm9::chr2:33498116..33498124,+#_0c0a261a6d82124a04d6c5f879459394 | p@chr2:33498116..33498124, + |
| 6.43e-32 | FFCP PHASE1:Mm9::chr2:33498116..33498124,+#_0c0a261a6d82124a04d6c5f879459394 | p@chr2:33498116..33498124, + |
| 7.44e-32 | FFCP PHASE2:Mm9::chr2:33496574..33496588,+#_7c2aa5778e164ae0b4b505672617b342 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 7.44e-32 | FFCP PHASE1:Mm9::chr2:33496574..33496588,+#_7c2aa5778e164ae0b4b505672617b342 | p4@ENSMUST00000152118, p4@uc008jhz.1 |
| 1.09e-30 | FFCP PHASE1:Mm9::chr2:74520075..74520087,+#_f0f31116f26388e91d34f02ab64f1516 | p6@Hoxd11 |
| 1.09e-30 | FFCP PHASE2:Mm9::chr2:74520075..74520087,+#_f0f31116f26388e91d34f02ab64f1516 | p6@Hoxd11 |
| 2.22e-30 | FFCP PHASE1:Mm9::chr12:34649201..34649205,+#_dc62503b298791738430665cf8e919a2 | p@chr12:34649201..34649205, + |
| 2.22e-30 | FFCP PHASE2:Mm9::chr12:34649201..34649205,+#_dc62503b298791738430665cf8e919a2 | p@chr12:34649201..34649205, + |
| 1.6e-29 | FFCP PHASE2:Mm9::chr5:120285104..120285113,+#_fef4d5b3e1956a69ab424a91b88528a6 | p5@Tbx5 |
| 1.6e-29 | FFCP PHASE1:Mm9::chr5:120285104..120285113,+#_fef4d5b3e1956a69ab424a91b88528a6 | p5@Tbx5 |
| 4.13e-29 | FFCP PHASE2:Mm9::chr5:120246556..120246565,+#_0545a4238bef432af8e20cea504579f3 | p@chr5:120246556..120246565, + |
| 4.13e-29 | FFCP PHASE1:Mm9::chr5:120246556..120246565,+#_0545a4238bef432af8e20cea504579f3 | p@chr5:120246556..120246565, + |
| 4.91e-29 | FFCP PHASE2:Mm9::chr5:120246522..120246553,+#_8754c86616a576cab614b060ffbeecc7 | p@chr5:120246522..120246553, + |
| 4.91e-29 | FFCP PHASE1:Mm9::chr5:120246522..120246553,+#_8754c86616a576cab614b060ffbeecc7 | p@chr5:120246522..120246553, + |
| 5.59e-29 | FFCP PHASE2:Mm9::chr16:77329743..77329754,+#_50ea5c001fb92c1bec14875eba94af70 | p14@2810055G20Rik |
| 5.59e-29 | FFCP PHASE1:Mm9::chr16:77329743..77329754,+#_50ea5c001fb92c1bec14875eba94af70 | p14@2810055G20Rik |
| 8.27e-29 | FFCP PHASE1:Mm9::chr3:29912310..29912321,-#_79158ec80211f016a4c6dd304952f9bb | p23@Mecom |
| 8.27e-29 | FFCP PHASE2:Mm9::chr3:29912310..29912321,-#_79158ec80211f016a4c6dd304952f9bb | p23@Mecom |
| 6.5e-28 | FFCP PHASE2:Mm9::chr3:99044251..99044260,+#_b4f2042131d54edc43330aee962209ed | p8@Tbx15 |
| 6.5e-28 | FFCP PHASE1:Mm9::chr3:99044251..99044260,+#_b4f2042131d54edc43330aee962209ed | p8@Tbx15 |
| 3.95e-27 | FFCP PHASE2:Mm9::chr15:97807283..97807309,-#_6085d14844030b70873f3b0bcd072399 | p@chr15:97807283..97807309, - |
| 3.95e-27 | FFCP PHASE1:Mm9::chr15:97807283..97807309,-#_6085d14844030b70873f3b0bcd072399 | p@chr15:97807283..97807309, - |
| 5.23e-27 | FFCP PHASE2:Mm9::chr1:165244244..165244254,-#_b1bc8bf285b12f47d236b418e4a9c715 | p8@Prrx1 |
| 5.23e-27 | FFCP PHASE1:Mm9::chr1:165244244..165244254,-#_b1bc8bf285b12f47d236b418e4a9c715 | p8@Prrx1 |
| 1.4e-26 | FFCP PHASE2:Mm9::chr5:42155277..42155281,-#_1a9ba8e3d412ae3869dae04fc531ed6e | p2@Nkx3-2 |
| 1.4e-26 | FFCP PHASE1:Mm9::chr5:42155277..42155281,-#_1a9ba8e3d412ae3869dae04fc531ed6e | p2@Nkx3-2 |
| 1.64e-26 | FFCP PHASE1:Mm9::chr16:95807232..95807250,-#_972cb40867267d1cdbe95659a9d8fd27 | p@chr16:95807232..95807250, - |
| 1.64e-26 | FFCP PHASE2:Mm9::chr16:95807232..95807250,-#_972cb40867267d1cdbe95659a9d8fd27 | p@chr16:95807232..95807250, - |
| 7.57e-26 | FFCP PHASE2:Mm9::chr3:37606335..37606337,-#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr3:37606335..37606337, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chr3:37606335..37606337,-#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr3:37606335..37606337, - |
| 7.57e-26 | FFCP PHASE1:Mm9::chr3:86116124..86116132,+#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr3:86116124..86116132, + |
| 7.57e-26 | FFCP PHASE1:Mm9::chr4:125973415..125973418,+#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr4:125973415..125973418, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr3:86116124..86116132,+#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr3:86116124..86116132, + |
| 7.57e-26 | FFCP PHASE2:Mm9::chr4:125973415..125973418,+#_a3c6426b55b9ed0d0ec186fe67a937d9 | p@chr4:125973415..125973418, + |
| 1.07e-25 | FFCP PHASE1:Mm9::chr17:68300324..68300336,-#_39bfe93664e0a01ba0480dec317b41be | p5@Arhgap28 |
| 1.07e-25 | FFCP PHASE2:Mm9::chr17:68300324..68300336,-#_39bfe93664e0a01ba0480dec317b41be | p5@Arhgap28 |
| 2.33e-25 | FFCP PHASE2:Mm9::chr7:75096968..75096978,+#_82a9b513358399590bb11c5e93769ee0 | p9@Igf1r |
| 2.33e-25 | FFCP PHASE1:Mm9::chr7:75096968..75096978,+#_82a9b513358399590bb11c5e93769ee0 | p9@Igf1r |
| 2.93e-25 | FFCP PHASE2:Mm9::chr15:101936581..101936594,+#_680eeaf75a2d6d63e0075ad5251cd643 | p@chr15:101936581..101936594, + |
| 2.93e-25 | FFCP PHASE1:Mm9::chr15:101936581..101936594,+#_680eeaf75a2d6d63e0075ad5251cd643 | p@chr15:101936581..101936594, + |
| 2.99e-25 | FFCP PHASE1:Mm9::chr17:23882313..23882330,-#_6dbc3bc4593bb699f5a4ba04c3b1ca12 | p@chr17:23882313..23882330, - |
| 2.99e-25 | FFCP PHASE2:Mm9::chr17:23882313..23882330,-#_6dbc3bc4593bb699f5a4ba04c3b1ca12 | p@chr17:23882313..23882330, - |
| 3.52e-25 | FFCP PHASE2:Mm9::chr2:155771018..155771042,-#_352ec4de08e5a02932b64150dde02b64 | p1@Gdf5 |
| 3.52e-25 | FFCP PHASE1:Mm9::chr2:155771018..155771042,-#_352ec4de08e5a02932b64150dde02b64 | p1@Gdf5 |
| 2.77e-24 | FFCP PHASE1:Mm9::chr15:77137392..77137399,-#_40f06ef8cfdf3993b7ace92d9f86635b | p16@Rbfox2 |
| 2.77e-24 | FFCP PHASE2:Mm9::chr15:77137392..77137399,-#_40f06ef8cfdf3993b7ace92d9f86635b | p16@Rbfox2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Fin bud that develops into the pectoral fin.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
