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|namespace=
|namespace=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
|is_a=UBERON:0000058;;UBERON:0000077;;UBERON:0003928
|is_a=UBERON:0003928;;UBERON:0004119
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|comment=The path is as follows: Bile canaliculi 竊� Canals of Hering 竊� interlobular bile ducts 竊� intrahepatic bile ducts 竊� left and right hepatic ducts merge to form 竊� common hepatic duct exits liver and joins 竊� cystic duct (from gall bladder) forming 竊� common bile duct 竊� joins with pancreatic duct 竊� forming ampulla of Vater 竊� enters duodenum [WP]
|comment=The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|disjoint_from=
|disjoint_from=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=UBERON:0008835
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001173;;UBERON:0002294
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 17:02, 26 June 2012

Name:bile duct
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:111108947..111108951, +
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_fda5f37fd992588e06a692670ec5eedfp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:100752983..100752984, +
3.07e-86FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_fda5f37fd992588e06a692670ec5eedfp@chr2:133323630..133323631, +
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:11183699..11183703, -
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_fda5f37fd992588e06a692670ec5eedfp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_fda5f37fd992588e06a692670ec5eedfp@chr15:32178407..32178408, -
3.07e-86FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093764..35093773, -
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_fda5f37fd992588e06a692670ec5eedfp@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_fda5f37fd992588e06a692670ec5eedfp@chr3:104857794..104857802, -
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_fda5f37fd992588e06a692670ec5eedfp4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_fda5f37fd992588e06a692670ec5eedfp8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_fda5f37fd992588e06a692670ec5eedfp4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr7:52781901..52781904,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_fda5f37fd992588e06a692670ec5eedfp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35093616..35093631, -
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:52781901..52781904, +
3.07e-86FFCP PHASE2:Mm9::chr8:89310639..89310641,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:89310639..89310641, -
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_fda5f37fd992588e06a692670ec5eedfp6@Adamts1
3.07e-86FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_fda5f37fd992588e06a692670ec5eedfp@chr18:38831400..38831402, -
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_fda5f37fd992588e06a692670ec5eedfp@chr8:114123814..114123821, -
3.07e-86FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:93819538..93819549, +
3.07e-86FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:44793802..44793835, +
3.07e-86FFCP PHASE1:Mm9::chr10:93819538..93819549,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:93819538..93819549, +
3.07e-86FFCP PHASE1:Mm9::chr17:35106363..35106372,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35106363..35106372, -
3.07e-86FFCP PHASE2:Mm9::chr12:85288471..85288502,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:85288471..85288502, +
3.07e-86FFCP PHASE1:Mm9::chr11:109223756..109223764,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:109223756..109223764, -
3.07e-86FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113554186..113554192, +
3.07e-86FFCP PHASE1:Mm9::chr6:48398664..48398684,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:48398664..48398684, -
3.07e-86FFCP PHASE1:Mm9::chr15:88669906..88669914,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:88669906..88669914, +
3.07e-86FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:81955014..81955018, +
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_fda5f37fd992588e06a692670ec5eedfp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:5125608..5125613, +
3.07e-86FFCP PHASE1:Mm9::chr17:34798555..34798562,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_fda5f37fd992588e06a692670ec5eedfp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_fda5f37fd992588e06a692670ec5eedfp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_fda5f37fd992588e06a692670ec5eedfp@chr1:132405466..132405470, +
3.07e-86FFCP PHASE1:Mm9::chr17:67870501..67870507,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE1:Mm9::chr12:81955014..81955018,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:81955014..81955018, +
3.07e-86FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_fda5f37fd992588e06a692670ec5eedfp@chr13:96429295..96429302, -
3.07e-86FFCP PHASE1:Mm9::chr9:116223548..116223551,+#_fda5f37fd992588e06a692670ec5eedfp@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr11:119254092..119254100,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85586219..85586227,+#_fda5f37fd992588e06a692670ec5eedfp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE1:Mm9::chr9:42915101..42915106,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr7:118133901..118133904,-#_fda5f37fd992588e06a692670ec5eedfp@chr7:118133901..118133904, -
3.07e-86FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_fda5f37fd992588e06a692670ec5eedfp4@Gm4262
3.07e-86FFCP PHASE1:Mm9::chr6:15678147..15678149,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE1:Mm9::chr16:91441786..91441787,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr11:117737077..117737096,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:117737077..117737096, -
3.07e-86FFCP PHASE2:Mm9::chr19:29573929..29573932,+#_fda5f37fd992588e06a692670ec5eedfp@chr19:29573929..29573932, +
3.07e-86FFCP PHASE2:Mm9::chr11:48685851..48685860,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr11:115280630..115280662,+#_fda5f37fd992588e06a692670ec5eedfp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr7:109031260..109031268,+#_fda5f37fd992588e06a692670ec5eedfp@chr7:109031260..109031268, +
3.07e-86FFCP PHASE1:Mm9::chr17:35945332..35945335,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr18:5125608..5125613,+#_fda5f37fd992588e06a692670ec5eedfp@chr18:5125608..5125613, +
3.07e-86FFCP PHASE2:Mm9::chr17:34798555..34798562,+#_fda5f37fd992588e06a692670ec5eedfp@chr17:34798555..34798562, +
3.07e-86FFCP PHASE2:Mm9::chr16:91441786..91441787,-#_fda5f37fd992588e06a692670ec5eedfp@chr16:91441786..91441787, -
3.07e-86FFCP PHASE2:Mm9::chr3:121593688..121593695,+#_fda5f37fd992588e06a692670ec5eedfp@chr3:121593688..121593695, +
3.07e-86FFCP PHASE2:Mm9::chr4:126939557..126939562,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:126939557..126939562, +
3.07e-86FFCP PHASE1:Mm9::chr6:91441074..91441080,-#_fda5f37fd992588e06a692670ec5eedfp@chr6:91441074..91441080, -
3.07e-86FFCP PHASE1:Mm9::chr17:35094068..35094092,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr17:24807620..24807650,-#_fda5f37fd992588e06a692670ec5eedfp@chr17:24807620..24807650, -
3.07e-86FFCP PHASE1:Mm9::chr6:129180613..129180616,+#_fda5f37fd992588e06a692670ec5eedfp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE1:Mm9::chr12:85288471..85288502,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:85288471..85288502, +
3.07e-86FFCP PHASE2:Mm9::chr13:113542610..113542614,+#_fda5f37fd992588e06a692670ec5eedfp@chr13:113542610..113542614, +
3.07e-86FFCP PHASE2:Mm9::chr4:137487112..137487117,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE1:Mm9::chr5:32912678..32912687,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:32912678..32912687, +
3.07e-86FFCP PHASE1:Mm9::chr8:25530071..25530072,+#_fda5f37fd992588e06a692670ec5eedfp@chr8:25530071..25530072, +
3.07e-86FFCP PHASE1:Mm9::chr4:100890388..100890423,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE2:Mm9::chr11:54785454..54785456,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE2:Mm9::chr11:118287827..118287833,-#_fda5f37fd992588e06a692670ec5eedfp@chr11:118287827..118287833, -
3.07e-86FFCP PHASE2:Mm9::chr12:8400090..8400093,+#_fda5f37fd992588e06a692670ec5eedfp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE2:Mm9::chr10:85585991..85586025,-#_fda5f37fd992588e06a692670ec5eedfp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE2:Mm9::chr9:42915101..42915106,-#_fda5f37fd992588e06a692670ec5eedfp@chr9:42915101..42915106, -
3.07e-86FFCP PHASE1:Mm9::chr4:141645056..141645068,+#_fda5f37fd992588e06a692670ec5eedfp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr5:32912678..32912687,+#_fda5f37fd992588e06a692670ec5eedfp@chr5:32912678..32912687, +

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