UBERON:0001555: Difference between revisions
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|name=digestive tract | |name=digestive tract | ||
|namespace= | |namespace= | ||
|def="Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk | |def="Tube extending from the mouth to the anus." [http://en.wikipedia.org/wiki/Talk:Human_gastrointestinal_tract, http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855] | ||
|xref=AAO:0010023;;BILA:0000083;;BTO:0000511;;BTO:0000545;; | |xref=AAO:0010023;;BILA:0000083;;BTO:0000511;;BTO:0000545;;EHDAA2:0000726;;EHDAA:518;;EMAPA:16247;;FBbt:00003125;;FMA:45615;;galen:AlimentaryTract;;ncithesaurus:Gastrointestinal_Tract;;OpenCyc:Mx4rvVi0GpwpEbGdrcN5Y29ycA;;TAO:0000112;;TGMA:0001819;;VHOG:0000309;;WBbt:0005743;;ZFA:0000112 | ||
|is_a=UBERON:0000481;;UBERON:0004119 | |is_a=UBERON:0000481;;UBERON:0004119 | ||
|synonym="alimentary canal" EXACT [];;"digestive tube" RELATED [];;"enteric tract" EXACT [ZFA:0000112];;"gut" BROAD [];;"gut tube" RELATED [] | |synonym="alimentary canal" EXACT [];;"digestive tube" RELATED [];;"enteric tract" EXACT [ZFA:0000112];;"gut" BROAD [];;"gut tube" RELATED [] | ||
| Line 14: | Line 14: | ||
|obo_creation_date= | |obo_creation_date= | ||
|subset=uberon_slim;;vertebrate_core | |subset=uberon_slim;;vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "The alimentary or digestive tract, and associated organs.[TAO]" xsd:string | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 16:59, 26 June 2012
| Name: | digestive tract | ||
|---|---|---|---|
| Definition: | "Tube extending from the mouth to the anus." http://sourceforge.net/tracker/?func=detail&atid=440764&aid=2991587&group_id=36855 | ||
| Xrefs: |
| ||
| Synonyms: |
"alimentary canal" EXACT [] "digestive tube" RELATED [] "enteric tract" EXACT [ZFA:0000112] "gut" BROAD [] "gut tube" RELATED [] | ||
| Comments: | GO says gut is region of DT, from intestines to anus. ZFA treats as synonym for alimentary canal, and treats it as the sum of DT + organs (ZF has no term from stomach). GO says intestines to anus (excludes stomach and esophagus). MA appears to agree with GO (stomach and esophagus are not parts). FMA includes stomach and esophagus as parts of gut -- the FMA divides gut into lower and upper GI tract; it's not clear if this is exhaustive (small intestine is in neither), but lower GI tract may correspond better to the GO definition. NOTE: GO now changed, see sf id in def xref. Note that FMA also has a term 'gastrointestinal tract', but this includes the liver | ||
| Alt_id: | UBERON:FMA_45615-MA_0000917-ZFA_0000112 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000481(multi-tissue structure),UBERON:0004119(endoderm-derived structure) |
|---|
Children
| develops from: | UBERON:0003922 (pancreatic epithelial bud) |
|---|---|
| part of: | UBERON:0000162 (cloaca),UBERON:0000328 (gut wall),UBERON:0001962 (gut-associated lymphoid tissue),CL:0002251 (epithelial cell of alimentary canal),UBERON:0003408 (gland of gut),UBERON:0003929 (gut epithelium),UBERON:0004185 (endodermal part of digestive tract),UBERON:0004786 (gastrointestinal system mucosa),UBERON:0004906 (ectodermal part of digestive tract),UBERON:0004921 (subdivision of digestive tract),UBERON:0006235 (foregut-midgut junction),UBERON:0009854 (digestive tract diverticulum),UBERON:0010039 (food storage organ) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
... further results Mouse (Mus musculus)
- 10014-101C5 (colon, adult, pool1)
- 10015-101C6 (esophagus, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10047-101G2 (tonsil, adult, pool1)
- 10059-101H5 (tongue, fetal, donor1)
- 10062-101H8 (stomach, fetal, donor1)
- 10063-101H9 (temporal lobe, fetal, donor1)
- 10064-101I1 (small intestine, fetal, donor1)
- 10067-101I4 (rectum, fetal, donor1)
- 10070-101I7 (colon, fetal, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001555 (digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.99e-36 | FFCP PHASE1:Hg19::chr14:38064429..38064486,-#_7f75b0375c6fe26d9b094e10355871f1 | p1@FOXA1 |
| 4.99e-36 | FFCP PHASE2:Hg19::chr14:38064429..38064486,-#_7f75b0375c6fe26d9b094e10355871f1 | p1@FOXA1 |
| 1.61e-35 | FFCP PHASE2:Hg19::chr5:134369879..134369898,-#_c8f0f97e11417d34d8f8e629f6703b89 | p2@PITX1 |
| 1.61e-35 | FFCP PHASE1:Hg19::chr5:134369879..134369898,-#_c8f0f97e11417d34d8f8e629f6703b89 | p2@PITX1 |
| 1.29e-32 | FFCP PHASE2:Hg19::chr16:68269971..68270059,-#_767126de888fa03e96b2452cef210942 | p1@ESRP2 |
| 1.29e-32 | FFCP PHASE1:Hg19::chr16:68269971..68270059,-#_767126de888fa03e96b2452cef210942 | p1@ESRP2 |
| 4.79e-32 | FFCP PHASE1:Hg19::chr16:86542652..86542692,-#_99d62107aaa25061e0af0383c84d3c1e | p2@LOC400550 |
| 4.79e-32 | FFCP PHASE2:Hg19::chr16:86542652..86542692,-#_99d62107aaa25061e0af0383c84d3c1e | p2@LOC400550 |
| 9.87e-31 | FFCP PHASE1:Hg19::chr16:86532148..86532166,-#_317e7af35b411b38b82fbdcb5db21944 | p@chr16:86532148..86532166, - |
| 9.87e-31 | FFCP PHASE2:Hg19::chr16:86532148..86532166,-#_317e7af35b411b38b82fbdcb5db21944 | p@chr16:86532148..86532166, - |
| 1.01e-30 | FFCP PHASE1:Hg19::chr18:47721315..47721430,-#_e060ea15e3b3cc8275fc9cd990a6c9cd | p1@MYO5B |
| 1.01e-30 | FFCP PHASE2:Hg19::chr18:47721315..47721430,-#_e060ea15e3b3cc8275fc9cd990a6c9cd | p1@MYO5B |
| 1.18e-30 | FFCP PHASE2:Hg19::chr14:65409452..65409479,-#_97e7bed5a0104503fc94b5fa5cc2d1bf | p1@GPX2 |
| 1.18e-30 | FFCP PHASE1:Hg19::chr14:65409452..65409479,-#_97e7bed5a0104503fc94b5fa5cc2d1bf | p1@GPX2 |
| 5.14e-30 | FFCP PHASE1:Mm9::chr12:58646974..58647003,-#_1d5588422492a5b2c068d5e9ff5c620a | p1@Foxa1 |
| 5.14e-30 | FFCP PHASE2:Mm9::chr12:58646974..58647003,-#_1d5588422492a5b2c068d5e9ff5c620a | p1@Foxa1 |
| 5.76e-30 | FFCP PHASE1:Mm9::chr13:4190454..4190472,+#_d168473410eedc48766151e84dd346b6 | p2@Akr1c13 |
| 5.76e-30 | FFCP PHASE2:Mm9::chr13:4190454..4190472,+#_d168473410eedc48766151e84dd346b6 | p2@Akr1c13 |
| 1.52e-29 | FFCP PHASE2:Hg19::chr20:62168672..62168713,-#_5aacedbdb36071a5845fec6c9a2bccb6 | p1@PTK6 |
| 1.52e-29 | FFCP PHASE1:Hg19::chr20:62168672..62168713,-#_5aacedbdb36071a5845fec6c9a2bccb6 | p1@PTK6 |
| 4.1e-29 | FFCP PHASE1:Hg19::chr16:68260798..68260800,-#_86306adcc72821c11503c9208035b43f | p@chr16:68260798..68260800, - |
| 4.1e-29 | FFCP PHASE2:Hg19::chr16:68260798..68260800,-#_86306adcc72821c11503c9208035b43f | p@chr16:68260798..68260800, - |
| 6.23e-29 | FFCP PHASE2:Hg19::chr1:201979743..201979762,+#_f4fa1389399c91a6202e20b9c5986d27 | p1@ELF3 |
| 6.23e-29 | FFCP PHASE1:Hg19::chr1:201979743..201979762,+#_f4fa1389399c91a6202e20b9c5986d27 | p1@ELF3 |
| 7.64e-29 | FFCP PHASE1:Mm9::chr2:180976725..180976753,-#_7d02d1f545bb5a5c8816e70655e771b4 | p2@BC006779 |
| 7.64e-29 | FFCP PHASE2:Mm9::chr2:180976725..180976753,-#_7d02d1f545bb5a5c8816e70655e771b4 | p2@BC006779 |
| 1.66e-28 | FFCP PHASE1:Hg19::chr19:42212526..42212575,+#_15cacbbb6ad3321bc8481012173f3013 | p1@CEACAM5 |
| 1.66e-28 | FFCP PHASE2:Hg19::chr19:42212526..42212575,+#_15cacbbb6ad3321bc8481012173f3013 | p1@CEACAM5 |
| 2.87e-28 | FFCP PHASE2:Hg19::chr17:7164410..7164457,-#_4728d0952ad18d5fe407f5a5ba67b801 | p3@CLDN7 |
| 2.87e-28 | FFCP PHASE1:Hg19::chr17:7164410..7164457,-#_4728d0952ad18d5fe407f5a5ba67b801 | p3@CLDN7 |
| 7.57e-28 | FFCP PHASE1:Mm9::chr8:70018742..70018782,+#_de711064b9b5ceae8f8bf0496847262d | p1@Nat2 |
| 7.57e-28 | FFCP PHASE2:Mm9::chr8:70018742..70018782,+#_de711064b9b5ceae8f8bf0496847262d | p1@Nat2 |
| 1.1e-27 | FFCP PHASE1:Hg19::chr5:134369905..134369972,-#_f4c73e7aa53e1f36b37facebd8120b94 | p1@PITX1 |
| 1.1e-27 | FFCP PHASE2:Hg19::chr5:134369905..134369972,-#_f4c73e7aa53e1f36b37facebd8120b94 | p1@PITX1 |
| 1.82e-27 | FFCP PHASE2:Mm9::chr5:65194752..65194769,+#_63b32ea7ed7c92a53b5c34234d5e9c1d | p1@Klf3 |
| 1.82e-27 | FFCP PHASE1:Mm9::chr5:65194752..65194769,+#_63b32ea7ed7c92a53b5c34234d5e9c1d | p1@Klf3 |
| 3.7e-27 | FFCP PHASE1:Mm9::chr2:51828449..51828501,-#_6ebc98aef51fb6154484a476c151077b | p1@Nmi |
| 3.7e-27 | FFCP PHASE2:Mm9::chr2:51828449..51828501,-#_6ebc98aef51fb6154484a476c151077b | p1@Nmi |
| 3.88e-27 | FFCP PHASE1:Hg19::chr6:1312325..1312340,+#_92eb9ce425e7dbe8822a5354f68118b4 | p1@FOXQ1 |
| 3.88e-27 | FFCP PHASE2:Hg19::chr6:1312325..1312340,+#_92eb9ce425e7dbe8822a5354f68118b4 | p1@FOXQ1 |
| 5.02e-27 | FFCP PHASE2:Hg19::chr1:26503974..26504025,+#_0c2dd3a21f06c73cd3d4bd6f57d198ca | p1@CNKSR1 |
| 5.02e-27 | FFCP PHASE1:Hg19::chr1:26503974..26504025,+#_0c2dd3a21f06c73cd3d4bd6f57d198ca | p1@CNKSR1 |
| 5.37e-27 | FFCP PHASE1:Mm9::chr1:37722539..37722560,-#_39417cb28fa558695bd4694c6a9d2a34 | p@chr1:37722539..37722560, - |
| 5.37e-27 | FFCP PHASE2:Mm9::chr1:37722539..37722560,-#_39417cb28fa558695bd4694c6a9d2a34 | p@chr1:37722539..37722560, - |
| 5.43e-27 | FFCP PHASE2:Hg19::chr11:394196..394258,+#_b89bbe271cfc24ca87f65ef3652f36e5 | p1@PKP3 |
| 5.43e-27 | FFCP PHASE1:Hg19::chr11:394196..394258,+#_b89bbe271cfc24ca87f65ef3652f36e5 | p1@PKP3 |
| 6.53e-27 | FFCP PHASE2:Mm9::chr13:4278636..4278655,-#_f14d6e3c268212a14fa757ba77094c83 | p1@Akr1c12 |
| 6.53e-27 | FFCP PHASE1:Mm9::chr13:4278636..4278655,-#_f14d6e3c268212a14fa757ba77094c83 | p1@Akr1c12 |
| 1.11e-26 | FFCP PHASE2:Mm9::chr1:58852306..58852403,+#_04fd46990bf0d785ca2f212572033004 | p2@Casp8 |
| 1.11e-26 | FFCP PHASE1:Mm9::chr1:58852306..58852403,+#_04fd46990bf0d785ca2f212572033004 | p2@Casp8 |
| 2.45e-26 | FFCP PHASE2:Mm9::chr6:7795251..7795299,+#_084dd3bb8e51942116e54c7ac8fd7b08 | p1@C1galt1 |
| 2.45e-26 | FFCP PHASE1:Mm9::chr6:7795251..7795299,+#_084dd3bb8e51942116e54c7ac8fd7b08 | p1@C1galt1 |
| 2.56e-26 | FFCP PHASE1:Hg19::chr14:65409484..65409495,-#_beaaeeeec519676b5e69c11e9d2f4326 | p2@GPX2 |
| 2.56e-26 | FFCP PHASE2:Hg19::chr14:65409484..65409495,-#_beaaeeeec519676b5e69c11e9d2f4326 | p2@GPX2 |
| 2.62e-26 | FFCP PHASE1:Hg19::chr6:116381918..116381977,-#_b0a1adadae29dce8331eaf827b1f0611 | p1@FRK |
| 2.62e-26 | FFCP PHASE2:Hg19::chr6:116381918..116381977,-#_b0a1adadae29dce8331eaf827b1f0611 | p1@FRK |
| 2.79e-26 | FFCP PHASE2:Hg19::chr11:32851450..32851485,+#_f0b0c276060584f1bb46222af8a8a51c | p1@PRRG4 |
| 2.79e-26 | FFCP PHASE1:Hg19::chr11:32851450..32851485,+#_f0b0c276060584f1bb46222af8a8a51c | p1@PRRG4 |
| 3.02e-26 | FFCP PHASE2:Hg19::chr8:82644741..82644791,+#_dcf567df5ba7b248c21c1120884b287e | p2@CHMP4C |
| 3.02e-26 | FFCP PHASE1:Hg19::chr8:82644741..82644791,+#_dcf567df5ba7b248c21c1120884b287e | p2@CHMP4C |
| 3.55e-26 | FFCP PHASE2:Hg19::chr1:209825762..209825779,-#_440c4fdede1bbc3aa8a355c19c1497ff | p1@LAMB3 |
| 3.55e-26 | FFCP PHASE1:Hg19::chr1:209825762..209825779,-#_440c4fdede1bbc3aa8a355c19c1497ff | p1@LAMB3 |
| 4.15e-26 | FFCP PHASE2:Mm9::chr18:38369387..38369401,-#_ec22a68436d879837003a61c4e4bc4c3 | p4@Pcdh1 |
| 4.15e-26 | FFCP PHASE1:Mm9::chr18:38369387..38369401,-#_ec22a68436d879837003a61c4e4bc4c3 | p4@Pcdh1 |
| 4.54e-26 | FFCP PHASE2:Hg19::chr13:76334824..76334862,+#_67eecdf451f0c5237c8483d36d525e53 | p2@LMO7 |
| 4.54e-26 | FFCP PHASE1:Hg19::chr13:76334824..76334862,+#_67eecdf451f0c5237c8483d36d525e53 | p2@LMO7 |
| 4.87e-26 | FFCP PHASE2:Mm9::chr11:106781922..106781957,-#_45e498904e56ab67c281907ef363cd0b | p4@Smurf2 |
| 4.87e-26 | FFCP PHASE1:Mm9::chr11:106781922..106781957,-#_45e498904e56ab67c281907ef363cd0b | p4@Smurf2 |
| 4.9e-26 | FFCP PHASE2:Mm9::chr1:58852462..58852483,+#_ddb98a7eb8857b617c4a37506be697f2 | p4@Casp8 |
| 4.9e-26 | FFCP PHASE1:Mm9::chr1:58852462..58852483,+#_ddb98a7eb8857b617c4a37506be697f2 | p4@Casp8 |
| 5.37e-26 | FFCP PHASE1:Hg19::chr3:142315294..142315315,+#_86fc046f1ab8150da28dd8bc0800f184 | p3@PLS1 |
| 5.37e-26 | FFCP PHASE2:Hg19::chr3:142315294..142315315,+#_86fc046f1ab8150da28dd8bc0800f184 | p3@PLS1 |
| 5.52e-26 | FFCP PHASE1:Mm9::chr4:124428852..124428893,+#_523da6ba4cf21ae2b72cf9919a000f00 | p1@Inpp5b |
| 5.52e-26 | FFCP PHASE2:Mm9::chr4:124428852..124428893,+#_523da6ba4cf21ae2b72cf9919a000f00 | p1@Inpp5b |
| 5.79e-26 | FFCP PHASE2:Mm9::chr13:101322621..101322632,-#_693db625421e8c002b4238d020cb4a6e | p4@Ocln |
| 5.79e-26 | FFCP PHASE1:Mm9::chr13:101322621..101322632,-#_693db625421e8c002b4238d020cb4a6e | p4@Ocln |
| 6.23e-26 | FFCP PHASE1:Hg19::chr19:3708338..3708374,+#_2d1d58553ed13ad83eaa8dc9c4469315 | p2@TJP3 |
| 6.23e-26 | FFCP PHASE2:Hg19::chr19:3708338..3708374,+#_2d1d58553ed13ad83eaa8dc9c4469315 | p2@TJP3 |
| 6.37e-26 | FFCP PHASE2:Mm9::chr10:128180925..128180966,-#_bfcbeb10147aa0a6854344ab8cf6fb78 | p2@Dgka |
| 6.37e-26 | FFCP PHASE1:Mm9::chr10:128180925..128180966,-#_bfcbeb10147aa0a6854344ab8cf6fb78 | p2@Dgka |
| 7.63e-26 | FFCP PHASE2:Hg19::chr17:19651668..19651682,-#_7e524f95640b910478e3c2971e4ebb30 | p2@ALDH3A1 |
| 7.63e-26 | FFCP PHASE1:Hg19::chr17:19651668..19651682,-#_7e524f95640b910478e3c2971e4ebb30 | p2@ALDH3A1 |
| 8.05e-26 | FFCP PHASE1:Mm9::chr9:110782790..110782819,+#_309c0914c7ce25ec1fcb2066aa0e178f | p1@Als2cl |
| 8.05e-26 | FFCP PHASE2:Mm9::chr9:110782790..110782819,+#_309c0914c7ce25ec1fcb2066aa0e178f | p1@Als2cl |
| 8.42e-26 | FFCP PHASE2:Mm9::chr11:116072277..116072320,+#_b1809921aff73b3b62a26365c07486fb | p2@2310004N24Rik |
| 8.42e-26 | FFCP PHASE1:Mm9::chr11:116072277..116072320,+#_b1809921aff73b3b62a26365c07486fb | p2@2310004N24Rik |
| 9.38e-26 | FFCP PHASE2:Hg19::chr7:1595831..1595858,-#_6b3d542dbba5a033dd4792451a8effe2 | p1@TMEM184A |
| 9.38e-26 | FFCP PHASE1:Hg19::chr7:1595831..1595858,-#_6b3d542dbba5a033dd4792451a8effe2 | p1@TMEM184A |
| 1.03e-25 | FFCP PHASE1:Hg19::chr10:101690650..101690683,-#_bffb6333378b9425b2112daf8ca1f27b | p2@DNMBP |
| 1.03e-25 | FFCP PHASE2:Hg19::chr10:101690650..101690683,-#_bffb6333378b9425b2112daf8ca1f27b | p2@DNMBP |
| 1.14e-25 | FFCP PHASE2:Hg19::chr1:201979703..201979721,+#_54556349aa1251b663c5f4ffadec4f04 | p2@ELF3 |
| 1.14e-25 | FFCP PHASE1:Hg19::chr1:201979703..201979721,+#_54556349aa1251b663c5f4ffadec4f04 | p2@ELF3 |
| 1.37e-25 | FFCP PHASE1:Hg19::chr10:114133905..114133922,+#_5a6803a6b70a3758c604869f0386d567 | p2@ACSL5 |
| 1.37e-25 | FFCP PHASE2:Hg19::chr10:114133905..114133922,+#_5a6803a6b70a3758c604869f0386d567 | p2@ACSL5 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr18:61144160..61144214,+#_59f29aa032d18c21a00d42e45897aee8 | p1@SERPINB5 |
| 1.44e-25 | FFCP PHASE1:Hg19::chr18:61144160..61144214,+#_59f29aa032d18c21a00d42e45897aee8 | p1@SERPINB5 |
| 1.48e-25 | FFCP PHASE2:Mm9::chr6:117867010..117867024,+#_b053ee2028becff173778aa7d36ef619 | p3@Hnrnpf |
| 1.48e-25 | FFCP PHASE1:Mm9::chr6:117867010..117867024,+#_b053ee2028becff173778aa7d36ef619 | p3@Hnrnpf |
| 1.51e-25 | FFCP PHASE1:Hg19::chr3:111451321..111451372,+#_5ed19a7b6089494955e9ef7deb2cbefb | p3@PHLDB2 |
| 1.51e-25 | FFCP PHASE2:Hg19::chr3:111451321..111451372,+#_5ed19a7b6089494955e9ef7deb2cbefb | p3@PHLDB2 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "The alimentary or digestive tract, and associated organs.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
