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|name=subdivision of skeletal system
|name=subdivision of skeletal system
|namespace=
|namespace=
|def=
|def="Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
|xref=FMA:23879;;FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
|xref=FMA:85544;;galen:ComplexSkeletalStructure;;ncithesaurus:Skeletal_System_Part;;SCTID:118966000
|is_a=UBERON:0000480;;UBERON:0004120
|is_a=UBERON:0011216
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544];;"skeleton part" RELATED [];;"subdivision of skeleton" RELATED [];;"subdivision of skeleton (in vivo)" EXACT [FMA:23879]
|synonym="skeletal system part" RELATED [];;"skeletal system subdivision" EXACT [FMA:85544]
|comment=note we consciously merge the two FMA classes below
|comment=
|alt_id=
|alt_id=UBERON:0010322
|disjoint_from=
|disjoint_from=
|union_of=
|union_of=
|created_by=cjm
|created_by=
|obo_creation_date=2009-07-30T03:53:53Z
|obo_creation_date=
|subset=
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=UBERON:0001434
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 16:56, 26 June 2012

Name:subdivision of skeletal system
Definition:"Anatomical cluster consisting of the skeletal elements and articular elements that are part of an individual subdivision of the organism." [UBERON:cjm, UBERONREF:0000003]
Xrefs:
links:

FMA:85544
galen:ComplexSkeletalStructure
ncithesaurus:Skeletal_System_Part

SCTID:118966000
Synonyms: "skeletal system part" RELATED []
"skeletal system subdivision" EXACT [FMA:85544]
Alt_id: UBERON:0010322

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0011216(organ system subdivision)



Children

is a:UBERON:0001130 (vertebral column),UBERON:0002517 (basicranium),UBERON:0003128 (cranium),UBERON:0003129 (skull),UBERON:0004761 (cartilaginous neurocranium),UBERON:0010323 (cranial skeletal system),UBERON:0011137 (axial skeletal system),UBERON:0011138 (post-cranial axial skeletal system),UBERON:0011158 (primary subdivision of skull),UBERON:0011159 (primary subdivision of cranial skeletal system),UBERON:0011249 (appendicular skeletal system)
part of:UBERON:0010912 (subdivision of skeleton)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000075 (subdivision of skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.88e-51FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0p@chr3:174737010..174737023, +
1.88e-51FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_401b79322dc7bcdcd2810a036c808ab0p@chr3:174737010..174737023, +
2.62e-44FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2fp4@PAX1
2.62e-44FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_ed8758bb90017b2982c753d61f9e8f2fp4@PAX1
5.38e-44FFCP PHASE2:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455bp@chr1:24217213..24217226, +
5.38e-44FFCP PHASE1:Mm9::chr1:24217213..24217226,+#_0f65b1f68670eeb5c25b2468bf65455bp@chr1:24217213..24217226, +
7.83e-38FFCP PHASE2:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751p@chr22:23586671..23586679, +
7.83e-38FFCP PHASE1:Hg19::chr22:23586671..23586679,+#_33653884859d73f39ced41f212773751p@chr22:23586671..23586679, +
1.02e-36FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834ap1@ENST00000555639
1.02e-36FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_e9bb9f13cb1fa959c779a9f9fda8834ap1@ENST00000555639
2.1e-35FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970p2@PAX9
2.1e-35FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_23cf261d0084387ceee5652d74071970p2@PAX9
7.98e-34FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92ep1@ENST00000427892, p1@uc001dgp.1
7.98e-34FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_dc85b6c70736ef20beae6110a125d92ep1@ENST00000427892, p1@uc001dgp.1
9.47e-34FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7p4@PAX9
9.47e-34FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_e73158edb69a26ad4316a33dfac0b5d7p4@PAX9
2.03e-33FFCP PHASE1:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144p@chr15:78817557..78817567, +
2.03e-33FFCP PHASE2:Mm9::chr15:78817557..78817567,+#_6fe1bcab5e5433691b23bde493b2a144p@chr15:78817557..78817567, +
3.37e-33FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2ep26@Myo18a
3.37e-33FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_3e262b263f50c19622b7fb283f21bf2ep26@Myo18a
4.33e-33FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fcp@chr8:75097542..75097549, +
4.33e-33FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fcp@chr9:21934585..21934591, -
4.33e-33FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fcp@chr2:32482372..32482381, +
4.33e-33FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_f821cb26cc14b5999a63031ca07e39fcp@chr9:21934585..21934591, -
4.33e-33FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_f821cb26cc14b5999a63031ca07e39fcp@chr8:75097542..75097549, +
4.33e-33FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_f821cb26cc14b5999a63031ca07e39fcp@chr2:32482372..32482381, +
1.06e-32FFCP PHASE1:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23p2@ENST00000555639
1.06e-32FFCP PHASE2:Hg19::chr14:37126852..37126863,+#_9613815bb4d008d44a393c3d57009a23p2@ENST00000555639
9.32e-32FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487p@chr1:75599683..75599699, -
9.32e-32FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_174a3be3cca12d03010c7a2cbf115487p@chr1:75599683..75599699, -
2.86e-31FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12p@chr5:30104176..30104187, -
2.86e-31FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_c099c8202dff6b937d8165259cda9e12p@chr5:30104176..30104187, -
3.24e-31FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9p@chr1:75599672..75599682, -
3.24e-31FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_6b8060986f2ce66781d7ef68a5a574f9p@chr1:75599672..75599682, -
6.66e-30FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_882a5095cc6c4cbecd9521b3bd0ca10bp11@Tecta
6.66e-30FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr8:13425469..13425503, +
6.66e-30FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_882a5095cc6c4cbecd9521b3bd0ca10bp10@Otof
6.66e-30FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr4:130461150..130461185, +
6.66e-30FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:103146966..103146971, -
6.66e-30FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_882a5095cc6c4cbecd9521b3bd0ca10bp2@9230102O04Rik
6.66e-30FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:35012425..35012439, +
6.66e-30FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:77084875..77084885, +
6.66e-30FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:128881546..128881553, -
6.66e-30FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Ptprq
6.66e-30FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:182528371..182528385, +
6.66e-30FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr19:10536767..10536777, -
6.66e-30FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_882a5095cc6c4cbecd9521b3bd0ca10bp6@Tecta
6.66e-30FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr6:113251606..113251613, +
6.66e-30FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:41495920..41495928, -
6.66e-30FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr10:108316802..108316807, -
6.66e-30FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:128881546..128881553, -
6.66e-30FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr16:93971367..93971379, -
6.66e-30FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Gm1322
6.66e-30FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr5:3909310..3909321, +
6.66e-30FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr19:10536797..10536802, -
6.66e-30FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:42207397..42207408, -
6.66e-30FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:154693281..154693317, -
6.66e-30FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:20649897..20649907, +
6.66e-30FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Ptprq
6.66e-30FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Kcna10
6.66e-30FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_882a5095cc6c4cbecd9521b3bd0ca10bp5@BC030867
6.66e-30FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_882a5095cc6c4cbecd9521b3bd0ca10bp7@Glt25d2
6.66e-30FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:65641779..65641790, +
6.66e-30FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_882a5095cc6c4cbecd9521b3bd0ca10bp15@Mctp1
6.66e-30FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:50968647..50968668, -
6.66e-30FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:93235253..93235264, +
6.66e-30FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_882a5095cc6c4cbecd9521b3bd0ca10bp11@Tsga14
6.66e-30FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr12:13508015..13508019, +
6.66e-30FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Tectb
6.66e-30FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr4:101908153..101908163, +
6.66e-30FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:53464168..53464175, +
6.66e-30FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr1:172843847..172843880, -
6.66e-30FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Kncn
6.66e-30FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_882a5095cc6c4cbecd9521b3bd0ca10bp3@Tecta
6.66e-30FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr5:3909290..3909299, +
6.66e-30FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr15:89215306..89215315, +
6.66e-30FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:53464168..53464175, +
6.66e-30FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Otogl
6.66e-30FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_882a5095cc6c4cbecd9521b3bd0ca10bp11@Tsga14
6.66e-30FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr17:13983198..13983203, +
6.66e-30FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_882a5095cc6c4cbecd9521b3bd0ca10bp41@Cacnb2
6.66e-30FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_882a5095cc6c4cbecd9521b3bd0ca10bp10@Sec11a
6.66e-30FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:11599532..11599539, -
6.66e-30FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr16:93971357..93971363, -
6.66e-30FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr5:150945209..150945220, +
6.66e-30FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Espnl
6.66e-30FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:73232344..73232356, -
6.66e-30FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_882a5095cc6c4cbecd9521b3bd0ca10bp10@Sec11a
6.66e-30FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr2:152453066..152453075, -
6.66e-30FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_882a5095cc6c4cbecd9521b3bd0ca10bp1@Tomt
6.66e-30FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr17:13983102..13983126, +
6.66e-30FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr7:141605556..141605563, -
6.66e-30FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Otol1
6.66e-30FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr9:66860888..66860899, +
6.66e-30FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr14:31283085..31283097, -
6.66e-30FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr6:86746562..86746579, -
6.66e-30FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_882a5095cc6c4cbecd9521b3bd0ca10bp2@Tecta
6.66e-30FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr3:154693281..154693317, -
6.66e-30FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_882a5095cc6c4cbecd9521b3bd0ca10bp5@Otogl
6.66e-30FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_882a5095cc6c4cbecd9521b3bd0ca10bp@chr11:4689837..4689845, -

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