CL:0002632: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002632
|name=epithelial cell of lower respiratory tract
|namespace=cell
|def=
|xref=
|is_a=CL:0002368
|synonym=
|comment=
|alt_id=
|disjoint_from=
|uni...") |
No edit summary |
||
| Line 20: | Line 20: | ||
|located_in= | |located_in= | ||
|part_of=UBERON:0001558 | |part_of=UBERON:0001558 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:42, 15 June 2012
| Name: | epithelial cell of lower respiratory tract |
|---|---|
| Namespace: | cell |
| Created by: | tmeehan |
| Creation date: | 2011-06-21T12:29:31Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0002368(respiratory epithelial cell) |
|---|---|
| part_of: | UBERON:0001558(lower respiratory tract) |
Children
| is a: | CL:0002202 (epithelial cell of tracheobronchial tree) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
... further results Mouse (Mus musculus)
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
- 11457-119A8 (Bronchial Epithelial Cell, donor5)
- 11461-119B3 (Bronchial Epithelial Cell, donor6)
- 11510-119G7 (Alveolar Epithelial Cells, donor1)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002632 (epithelial cell of lower respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_0802fe86a0eaff9da84ab9de8849dd40 | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_0802fe86a0eaff9da84ab9de8849dd40 | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_0802fe86a0eaff9da84ab9de8849dd40 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_0802fe86a0eaff9da84ab9de8849dd40 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_0802fe86a0eaff9da84ab9de8849dd40 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_0802fe86a0eaff9da84ab9de8849dd40 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_0802fe86a0eaff9da84ab9de8849dd40 | p@chr11:86461733..86461747, - |
| 4.4e-78 | FFCP PHASE2:Hg19::chr7:135018332..135018336,+#_77f8e5fefa85e13e4658398cab32f254 | p@chr7:135018332..135018336, + |
| 4.4e-78 | FFCP PHASE1:Hg19::chr7:135018332..135018336,+#_77f8e5fefa85e13e4658398cab32f254 | p@chr7:135018332..135018336, + |
| 5.16e-78 | FFCP PHASE2:Hg19::chr3:189632708..189632721,-#_d5877b9e418bdb0a67217bf5f246316a | p@chr3:189632708..189632721, - |
| 5.16e-78 | FFCP PHASE1:Hg19::chr3:189632708..189632721,-#_d5877b9e418bdb0a67217bf5f246316a | p@chr3:189632708..189632721, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_bbafe7b1150687a16f0f7701e9168b95 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_bbafe7b1150687a16f0f7701e9168b95 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_bbafe7b1150687a16f0f7701e9168b95 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_bbafe7b1150687a16f0f7701e9168b95 | p@chrX:20383628..20383635, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_82f8c8dfb18f8966f7f4d671ff7b4e37 | p@chr17:25888467..25888513, - |
| 5.88e-57 | FFCP PHASE1:Hg19::chr10:73679250..73679255,-#_61038e856c01813210d0121df58fb4f6 | p@chr10:73679250..73679255, - |
| 5.88e-57 | FFCP PHASE2:Hg19::chr10:73679250..73679255,-#_61038e856c01813210d0121df58fb4f6 | p@chr10:73679250..73679255, - |
| 5.25e-54 | FFCP PHASE2:Hg19::chr9:26747081..26747110,+#_01be34e78d0d67ed14f651f2dc39ad7e | p@chr9:26747081..26747110, + |
| 5.25e-54 | FFCP PHASE1:Hg19::chr9:26747081..26747110,+#_01be34e78d0d67ed14f651f2dc39ad7e | p@chr9:26747081..26747110, + |
