CL:0002609: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002609
|name=neuron of cerebral cortex
|namespace=cell
|def="A CNS neuron of the cerebral cortex." [GOC:tfm]
|xref=BTO:0004102
|is_a=CL:0000117
|synonym="c...") |
No edit summary |
||
| Line 4: | Line 4: | ||
|namespace=cell | |namespace=cell | ||
|def="A CNS neuron of the cerebral cortex." [GOC:tfm] | |def="A CNS neuron of the cerebral cortex." [GOC:tfm] | ||
|xref=BTO:0004102 | |xref=BTO:0004102;;FMA:84104 | ||
|is_a=CL:0000117 | |is_a=CL:0000117 | ||
|synonym="cortical neuron" EXACT [] | |synonym="cortical neuron" EXACT [] | ||
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|located_in= | |located_in= | ||
|part_of=UBERON:0000956 | |part_of=UBERON:0000956 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/cl.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:42, 15 June 2012
| Name: | neuron of cerebral cortex | ||
|---|---|---|---|
| Namespace: | cell | ||
| Definition: | "A CNS neuron of the cerebral cortex." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "cortical neuron" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2011-03-06T07:37:08Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|---|
| part_of: | UBERON:0000956(cerebral cortex) |
Children
| derives from: | FF:0000204 (cortical mouse neuron sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11642-122D4
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11647-122D9 (Mouse Neurons - cortical, donor3)
- 11719-123C9
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11724-123D5 (Mouse Neurons - cortical, donor1)
- 11737-123E9
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
- 11742-123F5 (Mouse Neurons - cortical, donor2)
Mouse (Mus musculus)
- 11642-122D4
- 11644-122D6 (Mouse Neurons - hippocampal, donor3)
- 11647-122D9 (Mouse Neurons - cortical, donor3)
- 11719-123C9
- 11721-123D2 (Mouse Neurons - hippocampal, donor1)
- 11724-123D5 (Mouse Neurons - cortical, donor1)
- 11737-123E9
- 11739-123F2 (Mouse Neurons - hippocampal, donor2)
- 11742-123F5 (Mouse Neurons - cortical, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002609 (neuron of cerebral cortex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.36e-86 | FFCP PHASE1:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01 | p8@Ttc39b |
| 1.36e-86 | FFCP PHASE2:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01 | p8@Ttc39b |
| 1.01e-74 | FFCP PHASE2:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184d | p@chr5:99703670..99703683, + |
| 1.01e-74 | FFCP PHASE1:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184d | p@chr5:99703670..99703683, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr1:41800574..41800586, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr1:173959095..173959106, - |
| 2.48e-72 | FFCP PHASE1:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr15:83602482..83602487, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr1:41800574..41800586, + |
| 2.48e-72 | FFCP PHASE2:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr15:83602482..83602487, + |
| 2.48e-72 | FFCP PHASE1:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr12:109150430..109150441, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr1:173959095..173959106, - |
| 2.48e-72 | FFCP PHASE2:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78b | p@chr12:109150430..109150441, - |
| 8.11e-66 | FFCP PHASE1:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dff | p@chr9:41387743..41387752, + |
| 8.11e-66 | FFCP PHASE2:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dff | p@chr9:41387743..41387752, + |
| 1.05e-65 | FFCP PHASE1:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3 | p@chr2:151906634..151906642, + |
| 1.05e-65 | FFCP PHASE2:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3 | p@chr2:151906634..151906642, + |
| 1.0e-60 | FFCP PHASE2:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621 | p@chr10:42298108..42298119, - |
| 1.0e-60 | FFCP PHASE1:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621 | p@chr10:42298108..42298119, - |
| 1.33e-60 | FFCP PHASE1:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8 | p4@Trim67 |
| 1.33e-60 | FFCP PHASE2:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8 | p4@Trim67 |
| 1.77e-60 | FFCP PHASE1:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977ae | p@chr12:50482811..50482817, - |
| 1.77e-60 | FFCP PHASE2:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977ae | p@chr12:50482811..50482817, - |
| 2.34e-60 | FFCP PHASE1:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aee | p@chr2:35960327..35960338, - |
| 2.34e-60 | FFCP PHASE2:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aee | p@chr2:35960327..35960338, - |
| 8.66e-59 | FFCP PHASE2:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318 | p@chr1:41800521..41800543, + |
| 8.66e-59 | FFCP PHASE1:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318 | p@chr1:41800521..41800543, + |
| 1.09e-58 | FFCP PHASE2:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392eb | p11@Satb2 |
| 1.09e-58 | FFCP PHASE1:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392eb | p11@Satb2 |
| 1.71e-58 | FFCP PHASE1:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5 | p@chr12:28025618..28025629, - |
| 1.71e-58 | FFCP PHASE2:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5 | p@chr12:28025618..28025629, - |
| 3.91e-58 | FFCP PHASE2:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr11:98233288..98233299, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p28@Dlg4 |
| 3.91e-58 | FFCP PHASE2:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p20@Sox5 |
| 3.91e-58 | FFCP PHASE2:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p19@Frmd4b |
| 3.91e-58 | FFCP PHASE2:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr12:50486639..50486645, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr11:98187500..98187512, - |
| 3.91e-58 | FFCP PHASE1:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr2:6792577..6792584, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p19@Frmd4b |
| 3.91e-58 | FFCP PHASE2:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr2:6792577..6792584, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p28@Dlg4 |
| 3.91e-58 | FFCP PHASE1:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr12:50486639..50486645, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr11:98187500..98187512, - |
| 3.91e-58 | FFCP PHASE1:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6a | p@chr11:98233288..98233299, + |
| 3.91e-58 | FFCP PHASE1:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6a | p20@Sox5 |
| 2.97e-53 | FFCP PHASE1:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffb | p5@Cux2 |
| 2.97e-53 | FFCP PHASE2:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffb | p5@Cux2 |
| 3.65e-53 | FFCP PHASE1:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8 | p16@Sox5 |
| 3.65e-53 | FFCP PHASE2:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8 | p@chr12:50483044..50483065, + |
| 3.65e-53 | FFCP PHASE1:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8 | p@chr12:50483044..50483065, + |
| 3.65e-53 | FFCP PHASE2:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8 | p16@Sox5 |
| 4.48e-53 | FFCP PHASE2:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806eb | p@chr5:111846145..111846158, - |
| 4.48e-53 | FFCP PHASE1:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806eb | p@chr5:111846145..111846158, - |
| 6.75e-53 | FFCP PHASE2:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9a | p@chr5:111847671..111847682, + |
| 6.75e-53 | FFCP PHASE1:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9a | p@chr5:111847671..111847682, + |
| 1.99e-52 | FFCP PHASE2:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407 | p@chr6:55629311..55629338, - |
| 1.99e-52 | FFCP PHASE1:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407 | p@chr6:55629311..55629338, - |
| 2.53e-52 | FFCP PHASE2:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775 | p7@Fezf2 |
| 2.53e-52 | FFCP PHASE1:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775 | p7@Fezf2 |
| 3.23e-52 | FFCP PHASE1:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237 | p11@Zfp238 |
| 3.23e-52 | FFCP PHASE2:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237 | p11@Zfp238 |
| 4.11e-52 | FFCP PHASE2:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654c | p6@Ulk4 |
| 4.11e-52 | FFCP PHASE1:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654c | p6@Ulk4 |
| 4.22e-52 | FFCP PHASE2:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9c | p@chr16:6348598..6348614, + |
| 4.22e-52 | FFCP PHASE1:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9c | p@chr16:6348598..6348614, + |
| 5.23e-52 | FFCP PHASE1:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7b | p9@Sox1 |
| 5.23e-52 | FFCP PHASE2:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7b | p9@Sox1 |
| 8.37e-49 | FFCP PHASE1:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246 | p@chr2:151906701..151906711, + |
| 8.37e-49 | FFCP PHASE2:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246 | p@chr2:151906701..151906711, + |
| 8.37e-49 | FFCP PHASE2:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246 | p@chr12:28022440..28022451, - |
| 8.37e-49 | FFCP PHASE1:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246 | p@chr12:28022440..28022451, - |
| 1.47e-48 | FFCP PHASE2:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812 | p3@Neurod6 |
| 1.47e-48 | FFCP PHASE1:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812 | p3@Neurod6 |
| 1.77e-48 | FFCP PHASE1:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622 | p@chr12:28026549..28026562, - |
| 1.77e-48 | FFCP PHASE2:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622 | p@chr12:28026549..28026562, - |
| 2.57e-48 | FFCP PHASE2:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21f | p2@ENSMUST00000172413, p2@uc009lxb.1 |
| 2.57e-48 | FFCP PHASE1:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21f | p2@ENSMUST00000172413, p2@uc009lxb.1 |
| 2.57e-48 | FFCP PHASE1:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21f | p9@Zfp238 |
| 2.57e-48 | FFCP PHASE2:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21f | p9@Zfp238 |
| 6.34e-47 | FFCP PHASE2:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42e | p11@Foxg1 |
| 6.34e-47 | FFCP PHASE1:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42e | p11@Foxg1 |
| 6.34e-47 | FFCP PHASE2:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42e | p@chr6:55631282..55631299, + |
| 6.34e-47 | FFCP PHASE1:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42e | p@chr6:55631282..55631299, + |
| 8.31e-47 | FFCP PHASE1:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5d | p26@Sox5 |
| 8.31e-47 | FFCP PHASE2:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5d | p26@Sox5 |
| 1.86e-46 | FFCP PHASE2:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dc | p@chr1:42770594..42770600, - |
| 1.86e-46 | FFCP PHASE1:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dc | p@chr1:42770594..42770600, - |
| 3.34e-46 | FFCP PHASE1:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbd | p22@Trim2 |
| 3.34e-46 | FFCP PHASE2:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbd | p22@Trim2 |
| 4.13e-46 | FFCP PHASE2:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:28022352..28022363, - |
| 4.13e-46 | FFCP PHASE2:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:50478644..50478659, + |
| 4.13e-46 | FFCP PHASE2:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:50485343..50485352, + |
| 4.13e-46 | FFCP PHASE1:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:28022352..28022363, - |
| 4.13e-46 | FFCP PHASE1:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:50478644..50478659, + |
| 4.13e-46 | FFCP PHASE1:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aa | p@chr12:50485343..50485352, + |
| 5.11e-46 | FFCP PHASE1:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54 | p@chr11:98189657..98189671, - |
| 5.11e-46 | FFCP PHASE2:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54 | p@chr11:98189657..98189671, - |
| 5.11e-46 | FFCP PHASE2:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54 | p7@Foxg1 |
| 5.11e-46 | FFCP PHASE1:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54 | p@chr12:28026469..28026480, - |
| 5.11e-46 | FFCP PHASE1:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54 | p7@Foxg1 |
| 5.11e-46 | FFCP PHASE2:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54 | p@chr12:28026469..28026480, - |
