CL:0002420: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{CL
|id=CL:0002420
|name=immature T cell
|namespace=cell
|def="A T cell that has not completed T cell selection." [GOC:tfm]
|xref=BTO:0001372
|is_a=CL:0000084
|synonym...") |
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|id=CL:0002420 | |id=CL:0002420 | ||
|name=immature T cell | |name=immature T cell | ||
|namespace= | |namespace=efo | ||
|def="A T cell that has not completed T cell selection." [GOC:tfm] | |def="A T cell that has not completed T cell selection." [GOC:tfm] | ||
|xref=BTO:0001372 | |xref=BTO:0001372 | ||
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|located_in= | |located_in= | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl | |||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:40, 15 June 2012
| Name: | immature T cell | ||
|---|---|---|---|
| Namespace: | efo | ||
| Definition: | "A T cell that has not completed T cell selection." [GOC:tfm] | ||
| Xrefs: |
| ||
| Synonyms: | "immature T-cell" EXACT [] | ||
| Created by: | tmeehan | ||
| Creation date: | 2010-10-12T01:56:17Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000084(T cell) |
|---|
Children
| is a: | CL:0000790 (immature alpha-beta T cell),CL:0000893 (thymocyte) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002420 (immature T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.82e-125 | FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_86c7739e0e0d1308afb9b44792e720a6 | p@chr5:35859622..35859626, + |
| 4.82e-125 | FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_86c7739e0e0d1308afb9b44792e720a6 | p@chr5:35859622..35859626, + |
| 2.55e-96 | FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_b5389a703d321d4a01f97c9f74728b16 | p@chr15:89179440..89179457, - |
| 2.55e-96 | FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_b5389a703d321d4a01f97c9f74728b16 | p@chr15:89179440..89179457, - |
| 1.42e-94 | FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_628492ee5af22a3ca0d1122477960200 | p@chr5:35854487..35854499, - |
| 1.42e-94 | FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_628492ee5af22a3ca0d1122477960200 | p@chr5:35854487..35854499, - |
| 1.09e-92 | FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_e11bf6d749b47aad49d8924f2897f996 | p@chr5:35854779..35854826, + |
| 1.09e-92 | FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_e11bf6d749b47aad49d8924f2897f996 | p@chr5:35854779..35854826, + |
| 4.33e-92 | FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_d9bf622f29f747089e7b68c6f8a0180c | p@chr4:103551892..103551903, - |
| 4.33e-92 | FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_d9bf622f29f747089e7b68c6f8a0180c | p@chr4:103551892..103551903, - |
| 1.97e-90 | FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_27b74456ccce50f3f3df5a2c9b7c6fcb | p@chr5:35856882..35856909, - |
| 1.97e-90 | FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_27b74456ccce50f3f3df5a2c9b7c6fcb | p@chr5:35856882..35856909, - |
| 2.93e-90 | FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_fe85f502599023125c8268ea795af993 | p1@GTSCR1 |
| 2.93e-90 | FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_fe85f502599023125c8268ea795af993 | p1@GTSCR1 |
| 5.78e-88 | FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_5df141587f3b74b025b7ffb3672a98f3 | p@chr7:97880779..97880793, + |
| 5.78e-88 | FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_5df141587f3b74b025b7ffb3672a98f3 | p@chr7:97880779..97880793, + |
| 8.73e-88 | FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_38b14d39c8767777e9c3622d8ab14379 | p@chr1:25255894..25255906, + |
| 8.73e-88 | FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_38b14d39c8767777e9c3622d8ab14379 | p@chr1:25255894..25255906, + |
| 4.59e-87 | FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_2da0a96cbc76da71eafcd7c2beb55dc0 | p10@HNRPLL |
| 4.59e-87 | FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_2da0a96cbc76da71eafcd7c2beb55dc0 | p10@HNRPLL |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_1e603a48b456ee48f430c23dd85a9b14 | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_1e603a48b456ee48f430c23dd85a9b14 | p3@Tnfrsf25 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_1e603a48b456ee48f430c23dd85a9b14 | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_1e603a48b456ee48f430c23dd85a9b14 | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_1e603a48b456ee48f430c23dd85a9b14 | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_1e603a48b456ee48f430c23dd85a9b14 | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_1e603a48b456ee48f430c23dd85a9b14 | p1@uc007tsm.1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_1e603a48b456ee48f430c23dd85a9b14 | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_1e603a48b456ee48f430c23dd85a9b14 | p@chr19:10869146..10869168, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_1e603a48b456ee48f430c23dd85a9b14 | p@chr4:32339511..32339518, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_1e603a48b456ee48f430c23dd85a9b14 | p@chr11:99015330..99015341, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_1e603a48b456ee48f430c23dd85a9b14 | p1@ENSMUST00000103733 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_1e603a48b456ee48f430c23dd85a9b14 | p@chr6:48637679..48637692, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_1e603a48b456ee48f430c23dd85a9b14 | p3@Tnfrsf25 |
| 2.98e-86 | FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_cbfa38c68c97ead487e9ac65be9254c4 | p@chr10:14611822..14611844, - |
| 2.98e-86 | FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_cbfa38c68c97ead487e9ac65be9254c4 | p@chr10:14611822..14611844, - |
| 3.57e-86 | FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_52700b995f3d633b05d4e00cb2f851a4 | p@chr4:90205082..90205093, + |
| 3.57e-86 | FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_52700b995f3d633b05d4e00cb2f851a4 | p@chr4:90205082..90205093, + |
| 9.89e-85 | FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_c44f4cab83432b04fe7e24a19de5cd8d | p@chr16:57162957..57162973, + |
| 9.89e-85 | FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_c44f4cab83432b04fe7e24a19de5cd8d | p@chr16:57162957..57162973, + |
| 1.01e-83 | FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_2fb7b941b5f4e826fdf331e625650fd3 | p@chr2:87053288..87053295, - |
| 1.01e-83 | FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_2fb7b941b5f4e826fdf331e625650fd3 | p@chr2:87053288..87053295, - |
| 1.1e-83 | FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_933ca346634c14810f5fae5a1dbdea46 | p@chr6:128299606..128299618, + |
| 1.1e-83 | FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_933ca346634c14810f5fae5a1dbdea46 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_933ca346634c14810f5fae5a1dbdea46 | p@chr11:122709344..122709378, + |
| 1.1e-83 | FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_933ca346634c14810f5fae5a1dbdea46 | p@chr6:128299606..128299618, + |
| 1.69e-83 | FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_daaeb46002ddd0cf0fbf009e2d4984fe | p@chr5:35780579..35780585, + |
| 1.69e-83 | FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_daaeb46002ddd0cf0fbf009e2d4984fe | p@chr5:35780579..35780585, + |
| 1.02e-82 | FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_d238547be7d5c52108a9ddcf26f3f331 | p@chr5:35859218..35859252, - |
| 1.02e-82 | FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_d238547be7d5c52108a9ddcf26f3f331 | p@chr5:35859218..35859252, - |
| 1.33e-82 | FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_ef7860daab50782ec7a517b52025040b | p@chr12:49375076..49375089, - |
| 1.33e-82 | FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_ef7860daab50782ec7a517b52025040b | p@chr12:49375076..49375089, - |
| 3.02e-82 | FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_59371d91c9ba3fc625c640025969bd13 | p@chr10:9060907..9060927, - |
| 3.02e-82 | FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_59371d91c9ba3fc625c640025969bd13 | p@chr10:9060907..9060927, - |
| 4.05e-82 | FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_943dc6c1ea02a13dc16ded725dd570fb | p@chr12:10561626..10561641, - |
| 4.05e-82 | FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_943dc6c1ea02a13dc16ded725dd570fb | p@chr12:10561626..10561641, - |
| 4.31e-82 | FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_e22f3a53b04e3ce5a6df0758e754c0c3 | p@chr7:150178764..150178778, - |
| 4.31e-82 | FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_e22f3a53b04e3ce5a6df0758e754c0c3 | p@chr7:150178764..150178778, - |
| 5.81e-82 | FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_1196385a54980b3d62838932ae7f95bb | p@chr2:182038499..182038509, + |
| 5.81e-82 | FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_1196385a54980b3d62838932ae7f95bb | p@chr2:182038499..182038509, + |
| 1.02e-81 | FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_c217e9265ebb7657c6e54638f6d85e87 | p@chr4:4271366..4271377, - |
| 1.02e-81 | FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_c217e9265ebb7657c6e54638f6d85e87 | p@chr4:4271366..4271377, - |
| 8.22e-81 | FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_ad520f866cfb5079790530b461dcbf58 | p10@ATM |
| 8.22e-81 | FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_ad520f866cfb5079790530b461dcbf58 | p10@ATM |
| 2.22e-80 | FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_9bde90dd3f81bfd76454a69544585cc6 | p@chr12:12867774..12867787, - |
| 2.22e-80 | FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_9bde90dd3f81bfd76454a69544585cc6 | p@chr12:12867774..12867787, - |
| 8.6e-79 | FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_00b31ff06a7b2f38ce34e919fd2140ca | p@chr5:67571114..67571129, - |
| 8.6e-79 | FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_00b31ff06a7b2f38ce34e919fd2140ca | p@chr5:67571114..67571129, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_4f2965e45e7e117fde29b94b0f5a579d | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_4f2965e45e7e117fde29b94b0f5a579d | p1@ENSMUST00000103714 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_4f2965e45e7e117fde29b94b0f5a579d | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_4f2965e45e7e117fde29b94b0f5a579d | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_4f2965e45e7e117fde29b94b0f5a579d | p@chr14:56207154..56207165, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_4f2965e45e7e117fde29b94b0f5a579d | p@chr5:123440486..123440504, - |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr8:84082784..84082795, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr7:31935025..31935037, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr12:74704873..74704900, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_4f2965e45e7e117fde29b94b0f5a579d | p@chr8:84082784..84082795, + |
| 2.56e-78 | FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_128d02de6f6f56981b127683bc89fa03 | p@chr6:143228788..143228799, - |
| 2.56e-78 | FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_128d02de6f6f56981b127683bc89fa03 | p@chr6:143228788..143228799, - |
| 2.82e-78 | FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_b14560948d25e49e138329a640be730a | p@chr5:123440767..123440778, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_b14560948d25e49e138329a640be730a | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_b14560948d25e49e138329a640be730a | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_b14560948d25e49e138329a640be730a | p@chr14:54838649..54838660, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_b14560948d25e49e138329a640be730a | p@chr4:32422919..32422935, + |
| 2.82e-78 | FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_b14560948d25e49e138329a640be730a | p@chr5:123440767..123440778, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_363bae5947ce1226ad30a6a270a7cfcf | p@chr15:27786221..27786240, - |
| 3.46e-78 | FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_363bae5947ce1226ad30a6a270a7cfcf | p@chr15:27786221..27786240, - |
| 4.25e-78 | FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_fe819b909d8350b06c7e19eac63b40b1 | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_fe819b909d8350b06c7e19eac63b40b1 | p@chr3:103672068..103672090, - |
| 4.25e-78 | FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_fe819b909d8350b06c7e19eac63b40b1 | p@chr6:99215016..99215036, + |
| 4.25e-78 | FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_fe819b909d8350b06c7e19eac63b40b1 | p@chr3:103672068..103672090, - |
| 5.22e-78 | FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_be093a4746fb2e31a8441662d5aca489 | p@chr6:48634453..48634468, - |
| 5.22e-78 | FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_be093a4746fb2e31a8441662d5aca489 | p@chr6:48634453..48634468, - |
| 6.45e-78 | FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_2cb52a11ce1e9556e30ebf24e78f9969 | p@chr7:36816941..36816949, + |
| 6.45e-78 | FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_2cb52a11ce1e9556e30ebf24e78f9969 | p@chr7:36816941..36816949, + |
| 7.86e-78 | FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_591a471a9e3591ecbb2934e88dbdda5a | p5@uc007vxz.1 |
| 7.86e-78 | FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_591a471a9e3591ecbb2934e88dbdda5a | p5@uc007vxz.1 |
