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(Created page with "{{CL |id=CL:0000586 |name=germ cell |namespace=cell |def="The reproductive cell in multicellular organisms." [MESH:A.05.360.490] |xref=BTO:0000535 |is_a=CL:0000039 |syn...")
 
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|id=CL:0000586
|id=CL:0000586
|name=germ cell
|name=germ cell
|namespace=cell
|namespace=efo
|def="The reproductive cell in multicellular organisms." [MESH:A.05.360.490]
|def="The reproductive cell in multicellular organisms." [MESH:A.05.360.490]
|xref=BTO:0000535
|xref=BTO:0000535;;WBbt:0006796
|is_a=CL:0000039
|is_a=CL:0000039;;EFO:0002955
|synonym=
|synonym=
|comment=
|comment=
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|located_in=
|located_in=
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.obo.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:38, 15 June 2012

Name:germ cell
Namespace:efo
Definition:"The reproductive cell in multicellular organisms." [MESH:A.05.360.490]
Xrefs:
links:

BTO:0000535

WBbt:0006796


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000039(germ line cell),EFO:0002955()



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
derives from:FF:0101575 (choriocarcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000586 (germ cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.99e-171FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205p3@DPPA3
1.99e-171FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205p3@DPPA3
5.52e-144FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2p3@TRIM60
5.52e-144FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2p3@TRIM60
9.03e-144FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3p4@DNMT3L
9.03e-144FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3p4@DNMT3L
6.94e-140FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcdep2@A2ML1-AS1
6.94e-140FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcdep2@A2ML1-AS1
1.01e-125FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864p2@DPPA3
1.01e-125FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864p2@DPPA3
5.61e-117FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39p1@A2ML1-AS1
5.61e-117FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39p1@A2ML1-AS1
7.13e-117FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783ap1@TRIM60
7.13e-117FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783ap1@TRIM60
9.06e-117FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaeep2@TRIM60
9.06e-117FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaeep2@TRIM60
1.15e-116FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923p@chr3:9895464..9895477, -
1.15e-116FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923p@chr3:9895464..9895477, -
3.15e-112FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0p@chr7:2309320..2309348, -
3.15e-112FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883879..51883908, -
3.15e-112FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0p6@LRRC6
3.15e-112FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717043..32717051, +
3.15e-112FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE1:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0p@chr4:779349..779383, +
3.15e-112FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:233989556..233989568, +
3.15e-112FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0p2@BX538205
3.15e-112FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0p5@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0p@chr6:6032547..6032560, -
3.15e-112FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:233989556..233989568, +
3.15e-112FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0p@chr7:2309320..2309348, -
3.15e-112FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE2:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0p@chr4:779349..779383, +
3.15e-112FFCP PHASE1:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0p3@KHDC1L
3.15e-112FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0p11@PPM1N
3.15e-112FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883879..51883908, -
3.15e-112FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0p6@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0p6@CNR2
3.15e-112FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0p5@NANOGP1
3.15e-112FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0p@chr6:6032547..6032560, -
3.15e-112FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0p11@PPM1N
3.15e-112FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0p@chr11:107782394..107782402, +
3.15e-112FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE2:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:227034858..227034868, +
3.15e-112FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0p3@KHDC1L
3.15e-112FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0p6@CNR2
3.15e-112FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0p5@NANOGP1
3.15e-112FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0p5@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717043..32717051, +
3.15e-112FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:227034858..227034868, +
3.15e-112FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0p2@BX538205
3.15e-112FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0p@chr11:107782394..107782402, +
3.67e-112FFCP PHASE1:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814ep@chr6:35511483..35511494, +
3.67e-112FFCP PHASE2:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814ep@chr6:35511483..35511494, +
1.28e-101FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954p2@DNMT3L
1.28e-101FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954p2@DNMT3L
4.29e-101FFCP PHASE2:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245p8@PPM1N
4.29e-101FFCP PHASE1:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245p8@PPM1N
7.2e-101FFCP PHASE1:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacdep@chr4:188963120..188963125, +
7.2e-101FFCP PHASE2:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacdep@chr4:188963120..188963125, +
5.5e-100FFCP PHASE1:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581p@chr3:48519267..48519301, -
5.5e-100FFCP PHASE2:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581p@chr3:48519267..48519301, -
1.18e-92FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333bp1@DNMT3L
1.18e-92FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333bp1@DNMT3L
3.52e-90FFCP PHASE1:Hg19::chr11:19838901..19838948,+#_1ac356bdc84f671f720008196132386bp@chr11:19838901..19838948, +
3.52e-90FFCP PHASE1:Hg19::chr4:3931902..3931913,+#_1ac356bdc84f671f720008196132386bp@chr4:3931902..3931913, +
3.52e-90FFCP PHASE2:Hg19::chr3:47297118..47297149,+#_1ac356bdc84f671f720008196132386bp@chr3:47297118..47297149, +
3.52e-90FFCP PHASE2:Hg19::chr7:5447185..5447197,-#_1ac356bdc84f671f720008196132386bp23@TNRC18
3.52e-90FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_1ac356bdc84f671f720008196132386bp@chr1:27385778..27385789, +
3.52e-90FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_1ac356bdc84f671f720008196132386bp1@DND1

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