UBERON:0005282: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005282
|name=ventricular system of brain
|namespace=
|def=
|xref=EV:0100306;;FMA:242787;;VHOG:0000005
|is_a=UBERON:0000467;;UBERON:0002616
|synonym...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of=UBERON:0000955;;UBERON:0005281 | |part_of=UBERON:0000955;;UBERON:0005281 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:22, 15 June 2012
| Name: | ventricular system of brain | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: | "brain ventricular system" EXACT [VHOG:0000005] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system),UBERON:0002616(regional part of brain) |
|---|---|
| part_of: | UBERON:0000955(brain),UBERON:0005281(ventricular system of central nervous system) |
Children
| part of: | UBERON:0004086 (brain ventricle) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11492-119E7 (Fibroblast - Choroid Plexus, donor1)
- 11572-120E6 (Fibroblast - Choroid Plexus, donor2)
- 11653-122E6 (Fibroblast - Choroid Plexus, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005282 (ventricular system of brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708474..201708479,+#_8bcf7c51d265011948bbc6b9ae5cbb8b | p58@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708474..201708479,+#_8bcf7c51d265011948bbc6b9ae5cbb8b | p58@NAV1 |
| 3.29e-195 | FFCP PHASE1:Hg19::chr1:201708485..201708494,+#_8bcf7c51d265011948bbc6b9ae5cbb8b | p55@NAV1 |
| 3.29e-195 | FFCP PHASE2:Hg19::chr1:201708485..201708494,+#_8bcf7c51d265011948bbc6b9ae5cbb8b | p55@NAV1 |
| 8.99e-131 | FFCP PHASE1:Hg19::chr8:24997361..24997368,-#_7a6d23371867ed1d59574a39d98777d4 | p@chr8:24997361..24997368, - |
| 8.99e-131 | FFCP PHASE2:Hg19::chr8:24997361..24997368,-#_7a6d23371867ed1d59574a39d98777d4 | p@chr8:24997361..24997368, - |
| 3.96e-66 | FFCP PHASE2:Hg19::chr17:75471711..75471726,+#_b9cc68b24ae60df94a9ada71862ba4b9 | p73@SEPT9 |
| 3.96e-66 | FFCP PHASE1:Hg19::chr3:146517344..146517356,+#_b9cc68b24ae60df94a9ada71862ba4b9 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE2:Hg19::chr3:146517344..146517356,+#_b9cc68b24ae60df94a9ada71862ba4b9 | p@chr3:146517344..146517356, + |
| 3.96e-66 | FFCP PHASE1:Hg19::chr17:75471711..75471726,+#_b9cc68b24ae60df94a9ada71862ba4b9 | p73@SEPT9 |
| 4.77e-57 | FFCP PHASE2:Hg19::chr12:15941738..15941768,+#_03ae7640b8e54335db1227337b2b36e8 | p@chr12:15941738..15941768, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr12:15941738..15941768,+#_03ae7640b8e54335db1227337b2b36e8 | p@chr12:15941738..15941768, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr5:149537789..149537803,-#_213d447f13b873441cc8627161f3d9ba | p@chr5:149537789..149537803, - |
| 6.36e-57 | FFCP PHASE2:Hg19::chr5:149537789..149537803,-#_213d447f13b873441cc8627161f3d9ba | p@chr5:149537789..149537803, - |
| 8.82e-51 | FFCP PHASE2:Hg19::chr10:105677427..105677438,-#_d678f58087567a3eaa5c337cdf3fcdc2 | p7@OBFC1 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr14:76072096..76072107,+#_d678f58087567a3eaa5c337cdf3fcdc2 | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr14:76072096..76072107,+#_d678f58087567a3eaa5c337cdf3fcdc2 | p7@FLVCR2 |
| 8.82e-51 | FFCP PHASE1:Hg19::chr10:105677427..105677438,-#_d678f58087567a3eaa5c337cdf3fcdc2 | p7@OBFC1 |
| 5.15e-50 | FFCP PHASE1:Hg19::chr16:65159735..65159744,-#_1e5d919b1bb8a7e8408bd3b05d89faff | p@chr16:65159735..65159744, - |
| 5.15e-50 | FFCP PHASE2:Hg19::chr16:65159735..65159744,-#_1e5d919b1bb8a7e8408bd3b05d89faff | p@chr16:65159735..65159744, - |
| 1.22e-44 | FFCP PHASE1:Hg19::chr5:158523468..158523481,-#_631b4ea2a9034476292efbab770acfb7 | p20@EBF1 |
| 1.22e-44 | FFCP PHASE2:Hg19::chr5:158523468..158523481,-#_631b4ea2a9034476292efbab770acfb7 | p20@EBF1 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr11:60680190..60680212,+#_8c5d6a241ca1a119b6350c433ae4c68a | p@chr11:60680190..60680212, + |
| 1.53e-44 | FFCP PHASE2:Hg19::chr11:60680190..60680212,+#_8c5d6a241ca1a119b6350c433ae4c68a | p@chr11:60680190..60680212, + |
| 5.99e-41 | FFCP PHASE1:Hg19::chr9:132390755..132390781,+#_97a7df09921390a9cfae825ed14ca65f | p7@METTL11A |
| 5.99e-41 | FFCP PHASE2:Hg19::chr9:132390755..132390781,+#_97a7df09921390a9cfae825ed14ca65f | p7@METTL11A |
| 8.98e-41 | FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_3f4f8e892b366c14a6f3ecbefd3d4a1b | p@chr1:19778678..19778689, - |
| 8.98e-41 | FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_3f4f8e892b366c14a6f3ecbefd3d4a1b | p@chr1:19778678..19778689, - |
| 1.34e-40 | FFCP PHASE1:Hg19::chr4:111397216..111397250,+#_ab0a2bd5d746866d66c352bde0363baa | p8@ENPEP |
| 1.34e-40 | FFCP PHASE2:Hg19::chr4:111397216..111397250,+#_ab0a2bd5d746866d66c352bde0363baa | p8@ENPEP |
| 9.84e-37 | FFCP PHASE1:Hg19::chr11:44331735..44331747,-#_7a6d2f31bc7c10b9f58fd6ca17951818 | p3@ALX4 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr11:44331735..44331747,-#_7a6d2f31bc7c10b9f58fd6ca17951818 | p3@ALX4 |
| 1.18e-36 | FFCP PHASE1:Hg19::chr1:236203048..236203055,-#_28c8906eecf59eb7cfb633670927a63a | p@chr1:236203048..236203055, - |
| 1.18e-36 | FFCP PHASE2:Hg19::chr1:236203048..236203055,-#_28c8906eecf59eb7cfb633670927a63a | p@chr1:236203048..236203055, - |
| 1.42e-36 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_b27a574afe5ec9e3e5351a498702d946 | p20@RIMS1 |
| 1.42e-36 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_b27a574afe5ec9e3e5351a498702d946 | p20@RIMS1 |
| 1.7e-36 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_aa0556784c2492e8e9bfc87a600eae20 | p@chr14:87636652..87636657, - |
| 1.7e-36 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_aa0556784c2492e8e9bfc87a600eae20 | p@chr14:87636652..87636657, - |
| 2.04e-36 | FFCP PHASE2:Hg19::chr14:61654271..61654282,+#_d77311ad1b7dcfc253997a76ec07dabb | p30@PRKCH |
| 2.04e-36 | FFCP PHASE1:Hg19::chr14:61654271..61654282,+#_d77311ad1b7dcfc253997a76ec07dabb | p30@PRKCH |
| 1.11e-34 | FFCP PHASE1:Hg19::chr12:108732917..108732935,-#_b1c002425682b8f0e2e33c8508c72cd3 | p5@CMKLR1 |
| 1.11e-34 | FFCP PHASE2:Hg19::chr12:108732917..108732935,-#_b1c002425682b8f0e2e33c8508c72cd3 | p5@CMKLR1 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr9:130830760..130830783,+#_33f07bcda6b6cdea9f09dc43bdb3054f | p11@SLC25A25 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr9:130830760..130830783,+#_33f07bcda6b6cdea9f09dc43bdb3054f | p11@SLC25A25 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:128902610..128902630,+#_bbcbd6e981304768bc46ea64a6b8a1f2 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:36906253..36906260,-#_bbcbd6e981304768bc46ea64a6b8a1f2 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:231988425..231988433,-#_bbcbd6e981304768bc46ea64a6b8a1f2 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:36906253..36906260,-#_bbcbd6e981304768bc46ea64a6b8a1f2 | p@chr6:36906253..36906260, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:231988425..231988433,-#_bbcbd6e981304768bc46ea64a6b8a1f2 | p11@HTR2B |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:128902610..128902630,+#_bbcbd6e981304768bc46ea64a6b8a1f2 | p17@PVT1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr15:95869480..95869493,+#_bbcbd6e981304768bc46ea64a6b8a1f2 | p@chr15:95869480..95869493, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr15:95869480..95869493,+#_bbcbd6e981304768bc46ea64a6b8a1f2 | p@chr15:95869480..95869493, + |
| 1.37e-31 | FFCP PHASE1:Hg19::chr2:223536233..223536234,+#_ec99794b38b666bdfe00ee11c1f1dc58 | p3@MOGAT1 |
| 1.37e-31 | FFCP PHASE2:Hg19::chr2:223536233..223536234,+#_ec99794b38b666bdfe00ee11c1f1dc58 | p3@MOGAT1 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr3:147127961..147127972,+#_5439134d12bcf549bbe679360b9978de | p3@AB464362 |
| 4.71e-31 | FFCP PHASE2:Hg19::chr3:147127961..147127972,+#_5439134d12bcf549bbe679360b9978de | p3@AB464362 |
| 4.71e-31 | FFCP PHASE1:Hg19::chr5:134260455..134260471,-#_5439134d12bcf549bbe679360b9978de | p@chr5:134260455..134260471, - |
| 4.71e-31 | FFCP PHASE2:Hg19::chr5:134260455..134260471,-#_5439134d12bcf549bbe679360b9978de | p@chr5:134260455..134260471, - |
| 6.96e-30 | FFCP PHASE1:Hg19::chr16:65159902..65159909,-#_f468874f35f71e8ba27560d0741a0665 | p@chr16:65159902..65159909, - |
| 6.96e-30 | FFCP PHASE2:Hg19::chr16:65159902..65159909,-#_f468874f35f71e8ba27560d0741a0665 | p@chr16:65159902..65159909, - |
| 1.08e-29 | FFCP PHASE1:Hg19::chr5:149537807..149537827,-#_c384d0d556f1e49ddd8d87e15a6ff664 | p@chr5:149537807..149537827, - |
| 1.08e-29 | FFCP PHASE2:Hg19::chr5:149537807..149537827,-#_c384d0d556f1e49ddd8d87e15a6ff664 | p@chr5:149537807..149537827, - |
| 9.09e-27 | FFCP PHASE1:Hg19::chr3:147124547..147124563,-#_c0c2e73803b532b7e511ef645ea6789b | p6@ZIC4 |
| 9.09e-27 | FFCP PHASE2:Hg19::chr3:147124547..147124563,-#_c0c2e73803b532b7e511ef645ea6789b | p6@ZIC4 |
| 1.67e-26 | FFCP PHASE1:Hg19::chr2:238066183..238066194,-#_7843a9a85861b51346a69fd760e7ad89 | p@chr2:238066183..238066194, - |
| 1.67e-26 | FFCP PHASE2:Hg19::chr2:238066183..238066194,-#_7843a9a85861b51346a69fd760e7ad89 | p@chr2:238066183..238066194, - |
| 4.08e-26 | FFCP PHASE1:Hg19::chr5:40910094..40910097,+#_84609579bbc026081d889d21433667ce | p@chr5:40910094..40910097, + |
| 4.08e-26 | FFCP PHASE2:Hg19::chr5:40910094..40910097,+#_84609579bbc026081d889d21433667ce | p@chr5:40910094..40910097, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr11:61634768..61634777,+#_cd15e4746869d46f1a1929cd2d25f363 | p@chr11:61634768..61634777, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr11:61634768..61634777,+#_cd15e4746869d46f1a1929cd2d25f363 | p@chr11:61634768..61634777, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:58658778..58658788,+#_ace14d0e0a5d1904c9a82076471710d9 | p2@ENST00000518934, p2@uc003xti.1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:58658778..58658788,+#_ace14d0e0a5d1904c9a82076471710d9 | p2@ENST00000518934, p2@uc003xti.1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:129504885..129504896,-#_a23ad7b2743e9d978527623e22c2cf7b | p@chr6:129504885..129504896, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:129504885..129504896,-#_a23ad7b2743e9d978527623e22c2cf7b | p@chr6:129504885..129504896, - |
| 1.44e-25 | FFCP PHASE1:Hg19::chr12:279773..279812,+#_1f6dcab40d27e5fe0a4d135547600c21 | p@chr12:279773..279812, + |
| 1.44e-25 | FFCP PHASE1:Hg19::chr3:147127358..147127369,+#_1f6dcab40d27e5fe0a4d135547600c21 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr3:147127358..147127369,+#_1f6dcab40d27e5fe0a4d135547600c21 | p16@ZIC1 |
| 1.44e-25 | FFCP PHASE2:Hg19::chr12:279773..279812,+#_1f6dcab40d27e5fe0a4d135547600c21 | p@chr12:279773..279812, + |
| 2.37e-25 | FFCP PHASE1:Hg19::chr3:147112699..147112713,-#_cc2757ced8b300e1834e481ae3c19fb3 | p@chr3:147112699..147112713, - |
| 2.37e-25 | FFCP PHASE2:Hg19::chr3:147112699..147112713,-#_cc2757ced8b300e1834e481ae3c19fb3 | p@chr3:147112699..147112713, - |
| 1.15e-24 | FFCP PHASE1:Hg19::chr1:47903765..47903783,+#_109ee6de4a9e30fdd19c104152e274d5 | p5@FOXD2 |
| 1.15e-24 | FFCP PHASE2:Hg19::chr1:47903765..47903783,+#_109ee6de4a9e30fdd19c104152e274d5 | p5@FOXD2 |
| 1.45e-24 | FFCP PHASE1:Hg19::chr9:16138889..16138902,-#_dc98c371082ac31e624ca38549e82d75 | p@chr9:16138889..16138902, - |
| 1.45e-24 | FFCP PHASE2:Hg19::chr9:16138889..16138902,-#_dc98c371082ac31e624ca38549e82d75 | p@chr9:16138889..16138902, - |
| 2.97e-24 | FFCP PHASE1:Hg19::chr2:192128035..192128057,+#_47ac51ba08e703847c3194f5358e46c0 | p6@MYO1B |
| 2.97e-24 | FFCP PHASE2:Hg19::chr2:192128035..192128057,+#_47ac51ba08e703847c3194f5358e46c0 | p6@MYO1B |
| 3.34e-24 | FFCP PHASE1:Hg19::chr3:147088197..147088208,-#_92ae268684fc27e12051273174890478 | p@chr3:147088197..147088208, - |
| 3.34e-24 | FFCP PHASE2:Hg19::chr3:147088197..147088208,-#_92ae268684fc27e12051273174890478 | p@chr3:147088197..147088208, - |
| 5.35e-24 | FFCP PHASE1:Hg19::chr17:1013251..1013277,-#_ec5a360860eb49e4f5bbd01a7212c81b | p@chr17:1013251..1013277, - |
| 5.35e-24 | FFCP PHASE2:Hg19::chr17:1013251..1013277,-#_ec5a360860eb49e4f5bbd01a7212c81b | p@chr17:1013251..1013277, - |
| 1.01e-23 | FFCP PHASE1:Hg19::chr11:60640905..60640919,+#_457f8097b1b853c97e46cb264c112cae | p@chr11:60640905..60640919, + |
| 1.01e-23 | FFCP PHASE2:Hg19::chr11:60640905..60640919,+#_457f8097b1b853c97e46cb264c112cae | p@chr11:60640905..60640919, + |
| 1.42e-23 | FFCP PHASE1:Hg19::chr17:75446774..75446783,+#_39b16955d94ec0bbc6be978a037e8f47 | p49@SEPT9 |
| 1.42e-23 | FFCP PHASE2:Hg19::chr17:75446774..75446783,+#_39b16955d94ec0bbc6be978a037e8f47 | p49@SEPT9 |
| 3.49e-23 | FFCP PHASE2:Hg19::chr11:8832119..8832124,-#_554d861d1e0c2e76e73b6fa59c7844d2 | p30@ST5 |
| 3.49e-23 | FFCP PHASE1:Hg19::chr11:8832119..8832124,-#_554d861d1e0c2e76e73b6fa59c7844d2 | p30@ST5 |
| 6.84e-23 | FFCP PHASE1:Hg19::chr6:55739244..55739256,-#_f0dca8c4059bcb0058759938778c8507 | p2@AB527577, p2@CU693346 |
| 6.84e-23 | FFCP PHASE2:Hg19::chr6:55739244..55739256,-#_f0dca8c4059bcb0058759938778c8507 | p2@AB527577, p2@CU693346 |
| 2.06e-22 | FFCP PHASE1:Hg19::chr11:60610073..60610090,+#_1acdc1daec741a5d3ad174f6978a9cee | p6@CCDC86 |
| 2.06e-22 | FFCP PHASE2:Hg19::chr11:60610073..60610090,+#_1acdc1daec741a5d3ad174f6978a9cee | p6@CCDC86 |
