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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
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Revision as of 17:15, 15 June 2012

Name:spiral organ of cochlea
Definition:"The organ of Corti (or spiral organ) is the organ in the inner ear of mammals that contains auditory sensory cells, or 'hair cells.' [WP,unvetted]." [Wikipedia:Organ_of_Corti]
Xrefs:
links:

AAO:0011018
BTO:0001691
EFO:0001364
EMAPA:19061
EMAPA:19151
EV:0100364
FMA:75715
GAID:772
[ 200px-Cochlea-crosssection.png 200px-Cochlea-crosssection.png]
MA:0001193
ncithesaurus:Organ_of_Corti
ncithesaurus:Spiral_Organ_of_Corti
NIF_GrossAnatomy:birnlex_2526

XAO:0003145
Synonyms: "basilar papilla" RELATED [BTO:0001691]
"cochlear spiral organ" EXACT []
"Corti's organ" RELATED [BTO:0001691]
"organ of corti" RELATED []
"organum spirale" RELATED [BTO:0001691]
"spiral organ" EXACT []
"spiral organ of corti" EXACT []
Comments:Todo - check XAO, taxon constraints
Alt_id: UBERON:FMA_75715-MA_0001193
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure)
part_of:UBERON:0001855(cochlear duct of membranous labyrinth)



Children

part of:CL:0000202 (auditory hair cell),CL:0000589 (cochlear inner hair cell),CL:0002490 (organ of Corti supporting cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002227 (spiral organ of cochlea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_94b85a8110f1309d0c218c5f692a21e0p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_94b85a8110f1309d0c218c5f692a21e0p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_94b85a8110f1309d0c218c5f692a21e0p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_94b85a8110f1309d0c218c5f692a21e0p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_94b85a8110f1309d0c218c5f692a21e0p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_94b85a8110f1309d0c218c5f692a21e0p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_94b85a8110f1309d0c218c5f692a21e0p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_94b85a8110f1309d0c218c5f692a21e0p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_94b85a8110f1309d0c218c5f692a21e0p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_94b85a8110f1309d0c218c5f692a21e0p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_94b85a8110f1309d0c218c5f692a21e0p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_94b85a8110f1309d0c218c5f692a21e0p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_94b85a8110f1309d0c218c5f692a21e0p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_94b85a8110f1309d0c218c5f692a21e0p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_94b85a8110f1309d0c218c5f692a21e0p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_94b85a8110f1309d0c218c5f692a21e0p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_94b85a8110f1309d0c218c5f692a21e0p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_94b85a8110f1309d0c218c5f692a21e0p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_94b85a8110f1309d0c218c5f692a21e0p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_94b85a8110f1309d0c218c5f692a21e0p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_94b85a8110f1309d0c218c5f692a21e0p2@Otol1
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_94b85a8110f1309d0c218c5f692a21e0p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_94b85a8110f1309d0c218c5f692a21e0p7@Pkn3
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_94b85a8110f1309d0c218c5f692a21e0p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_94b85a8110f1309d0c218c5f692a21e0p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_94b85a8110f1309d0c218c5f692a21e0p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_94b85a8110f1309d0c218c5f692a21e0p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_94b85a8110f1309d0c218c5f692a21e0p1@Strc
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_94b85a8110f1309d0c218c5f692a21e0p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_94b85a8110f1309d0c218c5f692a21e0p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_94b85a8110f1309d0c218c5f692a21e0p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_94b85a8110f1309d0c218c5f692a21e0p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_94b85a8110f1309d0c218c5f692a21e0p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_94b85a8110f1309d0c218c5f692a21e0p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_94b85a8110f1309d0c218c5f692a21e0p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_94b85a8110f1309d0c218c5f692a21e0p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_94b85a8110f1309d0c218c5f692a21e0p4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_94b85a8110f1309d0c218c5f692a21e0p4@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_94b85a8110f1309d0c218c5f692a21e0p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_94b85a8110f1309d0c218c5f692a21e0p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_94b85a8110f1309d0c218c5f692a21e0p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_94b85a8110f1309d0c218c5f692a21e0p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_94b85a8110f1309d0c218c5f692a21e0p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_94b85a8110f1309d0c218c5f692a21e0p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_94b85a8110f1309d0c218c5f692a21e0p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_94b85a8110f1309d0c218c5f692a21e0p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_94b85a8110f1309d0c218c5f692a21e0p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_94b85a8110f1309d0c218c5f692a21e0p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_94b85a8110f1309d0c218c5f692a21e0p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_94b85a8110f1309d0c218c5f692a21e0p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_94b85a8110f1309d0c218c5f692a21e0p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_94b85a8110f1309d0c218c5f692a21e0p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_94b85a8110f1309d0c218c5f692a21e0p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_94b85a8110f1309d0c218c5f692a21e0p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_94b85a8110f1309d0c218c5f692a21e0p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_94b85a8110f1309d0c218c5f692a21e0p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_94b85a8110f1309d0c218c5f692a21e0p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_94b85a8110f1309d0c218c5f692a21e0p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_94b85a8110f1309d0c218c5f692a21e0p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_94b85a8110f1309d0c218c5f692a21e0p1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_94b85a8110f1309d0c218c5f692a21e0p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_94b85a8110f1309d0c218c5f692a21e0p@chr3:35012397..35012405, +

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