Personal tools

UBERON:0002079: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0002079 |name=left atrium |namespace= |def="Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_at...")
 
No edit summary
Line 21: Line 21:
|part_of=
|part_of=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:14, 15 June 2012

Name:left atrium
Definition:"Left cardiac chamber which is continuous with the pulmonary venous trunk.[FMA]" [FMA:FMA, Wikipedia:Left_atrium]
Xrefs:
links:

AAO:0010247
BTO:0001702
EHDAA2:0000275
EMAPA:17315
FMA:7097
galen:LeftAtrium
[ 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png 200px-Diagram_of_the_human_heart_%28cropped%29.svg.png]
MA:0000074
ncithesaurus:Left_Atrium
OpenCyc:Mx4rkJN1AagEEdudWQACs5b6Bw
OpenCyc:Mx8Ngh4rvgIFoJwpEbGdrcN5Y29ycB4rDJ89oqgPEdudWQACs5b6Bw
SCTID:244387002
VHOG:0000369

XAO:0003191
Synonyms: "cardiac left atrium" EXACT []
"heart left atrium" EXACT []
"left atrium of heart" EXACT []
"left cardiac atrium" EXACT []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7097-MA_0000074
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002081(cardiac atrium)



Children

derives from:FF:0010079 (human left atrium - adult sample)
part of:UBERON:0005966 (outflow part of left atrium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002079 (left atrium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10p@chr1:43676416..43676417, -
5.42e-195FFCP PHASE2:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10p10@NPPA
5.42e-195FFCP PHASE2:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10p@chr17:79385898..79385905, -
5.42e-195FFCP PHASE1:Hg19::chr17:79385898..79385905,-#_60a5f92478c974c50dd349931d83ea10p@chr17:79385898..79385905, -
5.42e-195FFCP PHASE1:Hg19::chr1:11907474..11907481,-#_60a5f92478c974c50dd349931d83ea10p10@NPPA
5.42e-195FFCP PHASE2:Hg19::chr1:43676416..43676417,-#_60a5f92478c974c50dd349931d83ea10p@chr1:43676416..43676417, -
9.37e-99FFCP PHASE2:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753bp3@MYBPHL
9.37e-99FFCP PHASE1:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753bp3@LRRC10
9.37e-99FFCP PHASE1:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907440..11907450, +
9.37e-99FFCP PHASE2:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000509453
9.37e-99FFCP PHASE1:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753bp7@NPPA
9.37e-99FFCP PHASE1:Hg19::chr1:109849679..109849688,-#_00f4b8a07bd411992f79f399ec59753bp3@MYBPHL
9.37e-99FFCP PHASE2:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753bp13@CCDC41
9.37e-99FFCP PHASE2:Hg19::chr12:70004523..70004545,-#_00f4b8a07bd411992f79f399ec59753bp3@LRRC10
9.37e-99FFCP PHASE1:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753bp4@ENST00000451579
9.37e-99FFCP PHASE2:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907408..11907415, +
9.37e-99FFCP PHASE1:Hg19::chr4:8321842..8321846,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000509453
9.37e-99FFCP PHASE2:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753bp@chr1:11906044..11906050, -
9.37e-99FFCP PHASE1:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000451579
9.37e-99FFCP PHASE2:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753bp15@NPPA
9.37e-99FFCP PHASE1:Hg19::chr1:11907408..11907415,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907408..11907415, +
9.37e-99FFCP PHASE2:Hg19::chr15:26640258..26640266,+#_00f4b8a07bd411992f79f399ec59753bp4@ENST00000451579
9.37e-99FFCP PHASE1:Hg19::chr1:11906044..11906050,-#_00f4b8a07bd411992f79f399ec59753bp@chr1:11906044..11906050, -
9.37e-99FFCP PHASE2:Hg19::chr1:11907440..11907450,+#_00f4b8a07bd411992f79f399ec59753bp@chr1:11907440..11907450, +
9.37e-99FFCP PHASE1:Hg19::chr1:11907415..11907418,-#_00f4b8a07bd411992f79f399ec59753bp15@NPPA
9.37e-99FFCP PHASE1:Hg19::chr12:94730118..94730123,-#_00f4b8a07bd411992f79f399ec59753bp13@CCDC41
9.37e-99FFCP PHASE2:Hg19::chr1:11907318..11907327,-#_00f4b8a07bd411992f79f399ec59753bp7@NPPA
9.37e-99FFCP PHASE2:Hg19::chr15:26640282..26640290,+#_00f4b8a07bd411992f79f399ec59753bp5@ENST00000451579
2.55e-98FFCP PHASE2:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274072..45274078, -
2.55e-98FFCP PHASE2:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274102..45274110, -
2.55e-98FFCP PHASE2:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7p18@MYH6
2.55e-98FFCP PHASE2:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7p@chr18:28807557..28807562, -
2.55e-98FFCP PHASE1:Hg19::chr18:28807557..28807562,-#_15c146d05bb27c44126323d538ac36d7p@chr18:28807557..28807562, -
2.55e-98FFCP PHASE2:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7p@chr2:50059270..50059276, -
2.55e-98FFCP PHASE2:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7p@chr8:142431453..142431493, +
2.55e-98FFCP PHASE1:Hg19::chr11:45274072..45274078,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274072..45274078, -
2.55e-98FFCP PHASE2:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7p5@C1orf132
2.55e-98FFCP PHASE1:Hg19::chr2:50059270..50059276,-#_15c146d05bb27c44126323d538ac36d7p@chr2:50059270..50059276, -
2.55e-98FFCP PHASE2:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7p@chr6:138423239..138423250, -
2.55e-98FFCP PHASE1:Hg19::chr8:142431453..142431493,+#_15c146d05bb27c44126323d538ac36d7p@chr8:142431453..142431493, +
2.55e-98FFCP PHASE1:Hg19::chr11:45274102..45274110,-#_15c146d05bb27c44126323d538ac36d7p@chr11:45274102..45274110, -
2.55e-98FFCP PHASE1:Hg19::chr1:207996071..207996074,-#_15c146d05bb27c44126323d538ac36d7p5@C1orf132
2.55e-98FFCP PHASE1:Hg19::chr14:23862118..23862122,-#_15c146d05bb27c44126323d538ac36d7p18@MYH6
2.55e-98FFCP PHASE1:Hg19::chr6:138423239..138423250,-#_15c146d05bb27c44126323d538ac36d7p@chr6:138423239..138423250, -
1.23e-66FFCP PHASE2:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:104315251..104315260, -
1.23e-66FFCP PHASE2:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1p3@BMP10
1.23e-66FFCP PHASE2:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905915..11905921, -
1.23e-66FFCP PHASE1:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:77964143..77964150, -
1.23e-66FFCP PHASE2:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr5:172671810..172671816, -
1.23e-66FFCP PHASE2:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr12:114886422..114886429, -
1.23e-66FFCP PHASE1:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863078..23863082, +
1.23e-66FFCP PHASE2:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr4:65366184..65366190, -
1.23e-66FFCP PHASE2:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1p4@NPPA
1.23e-66FFCP PHASE2:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr18:21906552..21906584, +
1.23e-66FFCP PHASE1:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1p4@LRRC10
1.23e-66FFCP PHASE1:Hg19::chr2:69098566..69098571,-#_7cd48367c3aa61777f0269d3779ff7b1p3@BMP10
1.23e-66FFCP PHASE2:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1p2@ENST00000451579
1.23e-66FFCP PHASE1:Hg19::chr1:11905915..11905921,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905915..11905921, -
1.23e-66FFCP PHASE1:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:44172096..44172101, -
1.23e-66FFCP PHASE2:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863067..23863074, +
1.23e-66FFCP PHASE1:Hg19::chr5:172671810..172671816,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr5:172671810..172671816, -
1.23e-66FFCP PHASE1:Hg19::chr1:11907395..11907410,-#_7cd48367c3aa61777f0269d3779ff7b1p4@NPPA
1.23e-66FFCP PHASE1:Hg19::chr18:21906552..21906584,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr18:21906552..21906584, +
1.23e-66FFCP PHASE2:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1p1@ENST00000422084
1.23e-66FFCP PHASE2:Hg19::chr15:77964143..77964150,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:77964143..77964150, -
1.23e-66FFCP PHASE2:Hg19::chr12:70004575..70004590,-#_7cd48367c3aa61777f0269d3779ff7b1p4@LRRC10
1.23e-66FFCP PHASE2:Hg19::chr14:23863078..23863082,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863078..23863082, +
1.23e-66FFCP PHASE1:Hg19::chr4:65366184..65366190,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr4:65366184..65366190, -
1.23e-66FFCP PHASE1:Hg19::chr14:104315251..104315260,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:104315251..104315260, -
1.23e-66FFCP PHASE2:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905799..11905806, -
1.23e-66FFCP PHASE1:Hg19::chr7:145378479..145378484,-#_7cd48367c3aa61777f0269d3779ff7b1p1@ENST00000422084
1.23e-66FFCP PHASE2:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1p9@NPPA
1.23e-66FFCP PHASE2:Hg19::chr15:44172096..44172101,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr15:44172096..44172101, -
1.23e-66FFCP PHASE1:Hg19::chr12:114886422..114886429,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr12:114886422..114886429, -
1.23e-66FFCP PHASE1:Hg19::chr1:11905799..11905806,-#_7cd48367c3aa61777f0269d3779ff7b1p@chr1:11905799..11905806, -
1.23e-66FFCP PHASE1:Hg19::chr15:26640223..26640233,+#_7cd48367c3aa61777f0269d3779ff7b1p2@ENST00000451579
1.23e-66FFCP PHASE1:Hg19::chr14:23863067..23863074,+#_7cd48367c3aa61777f0269d3779ff7b1p@chr14:23863067..23863074, +
1.23e-66FFCP PHASE1:Hg19::chr1:11907265..11907271,-#_7cd48367c3aa61777f0269d3779ff7b1p9@NPPA
2.39e-66FFCP PHASE2:Hg19::chr10:97182338..97182349,-#_442689cc6837e7b894f8d67175d9ea04p@chr10:97182338..97182349, -
2.39e-66FFCP PHASE1:Hg19::chr20:55732283..55732288,-#_442689cc6837e7b894f8d67175d9ea04p@chr20:55732283..55732288, -
2.39e-66FFCP PHASE1:Hg19::chr2:101728712..101728734,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:101728712..101728734, +
2.39e-66FFCP PHASE1:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04p15@TBX5
2.39e-66FFCP PHASE2:Hg19::chr11:19231405..19231414,+#_442689cc6837e7b894f8d67175d9ea04p@chr11:19231405..19231414, +
2.39e-66FFCP PHASE2:Hg19::chr2:163978183..163978189,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:163978183..163978189, +
2.39e-66FFCP PHASE1:Hg19::chr15:99383378..99383380,-#_442689cc6837e7b894f8d67175d9ea04p@chr15:99383378..99383380, -
2.39e-66FFCP PHASE2:Hg19::chr3:119379472..119379475,-#_442689cc6837e7b894f8d67175d9ea04p6@POPDC2
2.39e-66FFCP PHASE1:Hg19::chr12:3157390..3157430,+#_442689cc6837e7b894f8d67175d9ea04p@chr12:3157390..3157430, +
2.39e-66FFCP PHASE2:Hg19::chr1:78383264..78383274,+#_442689cc6837e7b894f8d67175d9ea04p31@NEXN
2.39e-66FFCP PHASE2:Hg19::chr12:114841717..114841726,-#_442689cc6837e7b894f8d67175d9ea04p15@TBX5
2.39e-66FFCP PHASE2:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04p4@BX647262
2.39e-66FFCP PHASE2:Hg19::chr2:220492830..220492865,+#_442689cc6837e7b894f8d67175d9ea04p16@SLC4A3
2.39e-66FFCP PHASE1:Hg19::chr2:163978183..163978189,+#_442689cc6837e7b894f8d67175d9ea04p@chr2:163978183..163978189, +
2.39e-66FFCP PHASE1:Hg19::chr3:119379472..119379475,-#_442689cc6837e7b894f8d67175d9ea04p6@POPDC2
2.39e-66FFCP PHASE2:Hg19::chr15:99383378..99383380,-#_442689cc6837e7b894f8d67175d9ea04p@chr15:99383378..99383380, -
2.39e-66FFCP PHASE1:Hg19::chr12:94073515..94073534,+#_442689cc6837e7b894f8d67175d9ea04p@chr12:94073515..94073534, +
2.39e-66FFCP PHASE1:Hg19::chr12:117491808..117491811,-#_442689cc6837e7b894f8d67175d9ea04p6@TESC
2.39e-66FFCP PHASE2:Hg19::chr12:3157390..3157430,+#_442689cc6837e7b894f8d67175d9ea04p@chr12:3157390..3157430, +
2.39e-66FFCP PHASE1:Hg19::chr10:97182338..97182349,-#_442689cc6837e7b894f8d67175d9ea04p@chr10:97182338..97182349, -
2.39e-66FFCP PHASE1:Hg19::chr1:78383264..78383274,+#_442689cc6837e7b894f8d67175d9ea04p31@NEXN
2.39e-66FFCP PHASE1:Hg19::chr6:3912296..3912301,-#_442689cc6837e7b894f8d67175d9ea04p4@BX647262

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002079&oldid=1832753"