UBERON:0000310: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000310
|name=breast
|namespace=
|def="The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human being...") |
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|part_of=UBERON:0001443 | |part_of=UBERON:0001443 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:09, 15 June 2012
| Name: | breast | ||
|---|---|---|---|
| Definition: | "The breast is the upper ventral region of an animal's torso, particularly that of mammals, including human beings. The breasts of a female primate窶冱 body contain the mammary glands, which secrete milk used to feed infants. Both men and women develop breasts from the same embryological tissues. However, at puberty female sex hormones, mainly estrogens, promote breast development, which does not happen with men. As a result women's breasts become more prominent than men's. [WP,unvetted]." [Wikipedia:Breast] | ||
| Xrefs: |
| ||
| Synonyms: |
"mammary part of chest" EXACT [FMA:9601] "mammary region" EXACT [FMA:9601] | ||
| Alt_id: | UBERON:BTO_0000149-FMA_9601 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000475(organism subdivision) |
|---|---|
| part_of: | UBERON:0001443(chest) |
Children
| derives from: | FF:0010080 (human breast - adult sample),FF:0100816 (breast cell line sample) |
|---|---|
| part of: | CL:0002580 (preadipocyte of the breast),CL:0002617 (adipocyte of breast),FF:0011319 (mouse lung- embryo E12 sample),FF:0011338 (mouse lung- embryo E14 sample),FF:0011348 (mouse lung- embryo E15 sample),FF:0011357 (mouse lung- embryo E16 sample),FF:0011368 (mouse lung- embryo E17 sample),FF:28-22B1 (lung, adult),FF:354-16G2 (lung, embryo E12),FF:404-26F8 (lung, embryo E14),FF:432-17C5 (lung, embryo E15),FF:458-17B6 (lung, embryo E16),FF:480-44A6 (lung, embryo E17) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10080-102A8 (breast, adult, donor1)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 11327-117E4 (Adipocyte - breast, donor2)
- 11328-117E5 (Preadipocyte - breast, donor2)
- 11376-118A8 (Adipocyte - breast, donor1)
- 11467-119B9 (Preadipocyte - breast, donor1)
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
... further results Mouse (Mus musculus)
- 10080-102A8 (breast, adult, donor1)
- 10419-106C5 (breast carcinoma cell line:MDA-MB-453)
- 10482-107A5 (breast carcinoma cell line:MCF7)
- 10779-110G5
- 11327-117E4 (Adipocyte - breast, donor2)
- 11328-117E5 (Preadipocyte - breast, donor2)
- 11376-118A8 (Adipocyte - breast, donor1)
- 11467-119B9 (Preadipocyte - breast, donor1)
- 13031-139E7 (MCF7 breast cancer cell line response to EGF1, 00hr00min, biol_rep1)
- 13032-139E8 (MCF7 breast cancer cell line response to EGF1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000310 (breast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.79e-79 | FFCP PHASE2:Hg19::chr17:74574500..74574512,-#_815ad8bc14653f667e1e06274bf5e92d | p@chr17:74574500..74574512, - |
| 5.79e-79 | FFCP PHASE1:Hg19::chr17:74574500..74574512,-#_815ad8bc14653f667e1e06274bf5e92d | p@chr17:74574500..74574512, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:19498507..19498511,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498507..19498511, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:41755185..41755210,+#_1261c9191d449a02cf18119e00a9aad6 | p1@DSCAM-AS1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr9:83986187..83986191,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr9:83986187..83986191, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr12:3324464..3324485,+#_1261c9191d449a02cf18119e00a9aad6 | p4@TSPAN9 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:9012128..9012139,+#_1261c9191d449a02cf18119e00a9aad6 | p2@ENST00000456526 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:41711178..41711186,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr21:41711178..41711186, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:9012087..9012100,+#_1261c9191d449a02cf18119e00a9aad6 | p1@ENST00000456526 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:19498541..19498551,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498541..19498551, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:8904309..8904317,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:8904309..8904317, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:41756567..41756583,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr21:41756567..41756583, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr17:38843592..38843605,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr17:38843592..38843605, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr11:85539944..85539950,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr11:85539944..85539950, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr9:83986187..83986191,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr9:83986187..83986191, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:41755024..41755027,+#_1261c9191d449a02cf18119e00a9aad6 | p2@DSCAM-AS1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:19498507..19498511,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498507..19498511, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:19498568..19498573,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498568..19498573, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:8910201..8910211,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:8910201..8910211, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:41755185..41755210,+#_1261c9191d449a02cf18119e00a9aad6 | p1@DSCAM-AS1 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:9012128..9012139,+#_1261c9191d449a02cf18119e00a9aad6 | p2@ENST00000456526 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:19498407..19498415,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498407..19498415, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:41711178..41711186,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr21:41711178..41711186, - |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:19498541..19498551,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498541..19498551, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr12:3324464..3324485,+#_1261c9191d449a02cf18119e00a9aad6 | p4@TSPAN9 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:9012087..9012100,+#_1261c9191d449a02cf18119e00a9aad6 | p1@ENST00000456526 |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:8904309..8904317,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:8904309..8904317, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr17:38843592..38843605,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr17:38843592..38843605, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr21:41756567..41756583,-#_1261c9191d449a02cf18119e00a9aad6 | p@chr21:41756567..41756583, - |
| 1.1e-59 | FFCP PHASE1:Hg19::chr21:41755024..41755027,+#_1261c9191d449a02cf18119e00a9aad6 | p2@DSCAM-AS1 |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:19498568..19498573,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498568..19498573, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr11:85539944..85539950,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr11:85539944..85539950, + |
| 1.1e-59 | FFCP PHASE1:Hg19::chr10:8910201..8910211,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:8910201..8910211, + |
| 1.1e-59 | FFCP PHASE2:Hg19::chr10:19498407..19498415,+#_1261c9191d449a02cf18119e00a9aad6 | p@chr10:19498407..19498415, + |
| 3.91e-58 | FFCP PHASE2:Mm9::chr17:67043365..67043374,-#_ae3c30c8b17e4cb117244a9298964e07 | p17@Ptprm |
| 3.91e-58 | FFCP PHASE1:Mm9::chr17:67043365..67043374,-#_ae3c30c8b17e4cb117244a9298964e07 | p17@Ptprm |
| 4.03e-53 | FFCP PHASE2:Hg19::chr3:129226514..129226531,+#_5ea58262b0f60a4c780ed692d6706a88 | p@chr3:129226514..129226531, + |
| 4.03e-53 | FFCP PHASE1:Hg19::chr3:129226514..129226531,+#_5ea58262b0f60a4c780ed692d6706a88 | p@chr3:129226514..129226531, + |
| 1.39e-49 | FFCP PHASE1:Hg19::chr19:18899082..18899091,+#_a16f450e431aa50e03fdd42fc9a124a8 | p@chr19:18899082..18899091, + |
| 1.39e-49 | FFCP PHASE2:Hg19::chr19:18899082..18899091,+#_a16f450e431aa50e03fdd42fc9a124a8 | p@chr19:18899082..18899091, + |
| 6.34e-47 | FFCP PHASE2:Mm9::chr6:14851605..14851614,+#_4d0b91dea3377fbd457f3c3816943990 | p17@Foxp2 |
| 6.34e-47 | FFCP PHASE1:Mm9::chr6:14851605..14851614,+#_4d0b91dea3377fbd457f3c3816943990 | p17@Foxp2 |
| 1.12e-45 | FFCP PHASE2:Hg19::chr1:240577171..240577181,-#_5a78c1832f49eeb7aa5f3f3f6094a310 | p@chr1:240577171..240577181, - |
| 1.12e-45 | FFCP PHASE1:Hg19::chr1:240577171..240577181,-#_5a78c1832f49eeb7aa5f3f3f6094a310 | p@chr1:240577171..240577181, - |
| 1.57e-45 | FFCP PHASE1:Hg19::chr2:11679852..11679866,+#_bb49f60ed82092c7c6f101b0616ffb05 | p18@GREB1 |
| 1.57e-45 | FFCP PHASE2:Hg19::chr2:11679852..11679866,+#_bb49f60ed82092c7c6f101b0616ffb05 | p18@GREB1 |
| 4.18e-45 | FFCP PHASE2:Hg19::chr20:52482691..52482707,-#_a689f974e5484036afc3504439cf3047 | p@chr20:52482691..52482707, - |
| 4.18e-45 | FFCP PHASE2:Hg19::chr17:59469536..59469541,+#_a689f974e5484036afc3504439cf3047 | p@chr17:59469536..59469541, + |
| 4.18e-45 | FFCP PHASE2:Hg19::chr13:23733194..23733206,+#_a689f974e5484036afc3504439cf3047 | p@chr13:23733194..23733206, + |
| 4.18e-45 | FFCP PHASE1:Hg19::chr20:52482691..52482707,-#_a689f974e5484036afc3504439cf3047 | p@chr20:52482691..52482707, - |
| 4.18e-45 | FFCP PHASE1:Hg19::chr13:23733194..23733206,+#_a689f974e5484036afc3504439cf3047 | p@chr13:23733194..23733206, + |
| 4.18e-45 | FFCP PHASE1:Hg19::chr17:59469536..59469541,+#_a689f974e5484036afc3504439cf3047 | p@chr17:59469536..59469541, + |
| 4.85e-45 | FFCP PHASE1:Hg19::chr5:177505250..177505293,-#_7d91309136bcd37d9c88c409fe9e4b58 | p@chr5:177505250..177505293, - |
| 4.85e-45 | FFCP PHASE2:Hg19::chr5:177505250..177505293,-#_7d91309136bcd37d9c88c409fe9e4b58 | p@chr5:177505250..177505293, - |
| 3.04e-41 | FFCP PHASE2:Hg19::chr15:81242191..81242201,+#_394780a73525012c841e5c13bbac4dfb | p19@KIAA1199 |
| 3.04e-41 | FFCP PHASE1:Hg19::chr15:81242191..81242201,+#_394780a73525012c841e5c13bbac4dfb | p19@KIAA1199 |
| 2.0e-40 | FFCP PHASE2:Hg19::chr10:19498455..19498482,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr10:19498455..19498482, + |
| 2.0e-40 | FFCP PHASE1:Hg19::chr19:15674459..15674486,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr19:15674459..15674486, + |
| 2.0e-40 | FFCP PHASE1:Hg19::chr10:9012105..9012111,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p3@ENST00000456526 |
| 2.0e-40 | FFCP PHASE2:Hg19::chr13:23583578..23583586,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr13:23583578..23583586, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr17:65990543..65990553,-#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr17:65990543..65990553, - |
| 2.0e-40 | FFCP PHASE1:Hg19::chr13:23583578..23583586,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr13:23583578..23583586, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr1:96504230..96504238,-#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr1:96504230..96504238, - |
| 2.0e-40 | FFCP PHASE1:Hg19::chr17:65990543..65990553,-#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr17:65990543..65990553, - |
| 2.0e-40 | FFCP PHASE1:Hg19::chr10:19498455..19498482,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr10:19498455..19498482, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr19:15674459..15674486,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr19:15674459..15674486, + |
| 2.0e-40 | FFCP PHASE2:Hg19::chr10:9012105..9012111,+#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p3@ENST00000456526 |
| 2.0e-40 | FFCP PHASE1:Hg19::chr1:96504230..96504238,-#_c7a8a3452a6dcf8df1546c1d7d1c9925 | p@chr1:96504230..96504238, - |
| 3.51e-40 | FFCP PHASE2:Hg19::chr3:129226494..129226510,+#_ed9dda80aba3cffb3dcd21c54ee83d1a | p@chr3:129226494..129226510, + |
| 3.51e-40 | FFCP PHASE1:Hg19::chr3:129226494..129226510,+#_ed9dda80aba3cffb3dcd21c54ee83d1a | p@chr3:129226494..129226510, + |
| 4.3e-40 | FFCP PHASE1:Hg19::chr14:38064198..38064200,-#_2001d5ca2da42f042e7d291050070cbf | p11@FOXA1 |
| 4.3e-40 | FFCP PHASE2:Hg19::chr14:38064198..38064200,-#_2001d5ca2da42f042e7d291050070cbf | p11@FOXA1 |
| 5.81e-40 | FFCP PHASE1:Hg19::chr15:39486488..39486494,-#_1751bc166aa06f1b031d2040d6f6a547 | p6@ENST00000560743 |
| 5.81e-40 | FFCP PHASE2:Hg19::chr7:134430175..134430178,+#_1751bc166aa06f1b031d2040d6f6a547 | p85@CALD1 |
| 5.81e-40 | FFCP PHASE2:Hg19::chr15:39486488..39486494,-#_1751bc166aa06f1b031d2040d6f6a547 | p6@ENST00000560743 |
| 5.81e-40 | FFCP PHASE1:Hg19::chr7:134430175..134430178,+#_1751bc166aa06f1b031d2040d6f6a547 | p85@CALD1 |
| 6.42e-40 | FFCP PHASE1:Hg19::chr11:72493920..72493932,-#_cb63fbc5bbe8028e9b0b7e4b08e0548b | p19@STARD10 |
| 6.42e-40 | FFCP PHASE2:Hg19::chr11:72493920..72493932,-#_cb63fbc5bbe8028e9b0b7e4b08e0548b | p19@STARD10 |
| 2.19e-38 | FFCP PHASE2:Hg19::chr7:73483140..73483149,+#_241ce7352fe30492f3e1eb488a244a9d | p31@ELN |
| 2.19e-38 | FFCP PHASE1:Hg19::chr7:73483140..73483149,+#_241ce7352fe30492f3e1eb488a244a9d | p31@ELN |
| 4.73e-38 | FFCP PHASE2:Hg19::chr19:18897380..18897392,+#_555ac81a287af0eafc156781bbb268cd | p@chr19:18897380..18897392, + |
| 4.73e-38 | FFCP PHASE1:Hg19::chr19:18897380..18897392,+#_555ac81a287af0eafc156781bbb268cd | p@chr19:18897380..18897392, + |
| 2.4e-36 | FFCP PHASE2:Hg19::chr8:91871545..91871568,-#_e12cfeef5139a81527d0867923431fcf | p3@ENST00000517884 |
| 2.4e-36 | FFCP PHASE1:Hg19::chr8:91871545..91871568,-#_e12cfeef5139a81527d0867923431fcf | p3@ENST00000517884 |
| 3.05e-36 | FFCP PHASE1:Hg19::chr19:18899427..18899432,-#_a459a6744e4633786fd9c20435d50cb7 | p@chr19:18899427..18899432, - |
| 3.05e-36 | FFCP PHASE1:Hg19::chr3:161089631..161089635,+#_a459a6744e4633786fd9c20435d50cb7 | p@chr3:161089631..161089635, + |
| 3.05e-36 | FFCP PHASE2:Hg19::chr11:66811898..66811900,-#_a459a6744e4633786fd9c20435d50cb7 | p@chr11:66811898..66811900, - |
| 3.05e-36 | FFCP PHASE2:Hg19::chr19:18899427..18899432,-#_a459a6744e4633786fd9c20435d50cb7 | p@chr19:18899427..18899432, - |
| 3.05e-36 | FFCP PHASE1:Hg19::chr11:66811898..66811900,-#_a459a6744e4633786fd9c20435d50cb7 | p@chr11:66811898..66811900, - |
| 3.05e-36 | FFCP PHASE2:Hg19::chr3:161089631..161089635,+#_a459a6744e4633786fd9c20435d50cb7 | p@chr3:161089631..161089635, + |
| 4.93e-36 | FFCP PHASE2:Hg19::chr15:88119982..88120003,+#_5c93bbbc94119c8f952c3a889850d5d5 | p2@LINC00052 |
| 4.93e-36 | FFCP PHASE1:Hg19::chr15:88119982..88120003,+#_5c93bbbc94119c8f952c3a889850d5d5 | p2@LINC00052 |
| 7.31e-36 | FFCP PHASE1:Hg19::chr10:8091813..8091823,+#_0efcd6b5b9abe46130b5db993348cd52 | p@chr10:8091813..8091823, + |
| 7.31e-36 | FFCP PHASE2:Hg19::chr10:8091813..8091823,+#_0efcd6b5b9abe46130b5db993348cd52 | p@chr10:8091813..8091823, + |
| 1.25e-35 | FFCP PHASE2:Hg19::chr1:6488281..6488301,+#_c2ba6e97f2bdeee999b79b15488e8caf | p@chr1:6488281..6488301, + |
| 1.25e-35 | FFCP PHASE1:Hg19::chr1:6488281..6488301,+#_c2ba6e97f2bdeee999b79b15488e8caf | p@chr1:6488281..6488301, + |
| 1.25e-35 | FFCP PHASE2:Hg19::chr19:18901737..18901749,-#_c2ba6e97f2bdeee999b79b15488e8caf | p7@COMP |
| 1.25e-35 | FFCP PHASE1:Hg19::chr19:18901737..18901749,-#_c2ba6e97f2bdeee999b79b15488e8caf | p7@COMP |
| 1.63e-35 | FFCP PHASE1:Hg19::chr15:39486361..39486371,-#_61b9ac3b961399e305f1811337706d62 | p5@ENST00000560743 |
| 1.63e-35 | FFCP PHASE2:Hg19::chr15:39486361..39486371,-#_61b9ac3b961399e305f1811337706d62 | p5@ENST00000560743 |
