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         <h1 id="firstHeading" class="firstHeading">FF:10717-109I6, TF to Motif to TF network</h1>
         <h1 id="firstHeading" class="firstHeading">FF:10717-109I6, TF to Motif to TF network</h1>
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</p>


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</a -->
</a -->
<p /><br /><b>LEGEND:</b> <span class="tf">TF <img src="/resource_browser/nwfiles/tf.png" /></span>, <span class="motif">MOTIF <img src="/resource_browser/nwfiles/motif.png" /></span>,  
<p /><b>LEGEND:</b> <span class="tf">TF <img src="tf.png" /></span>, <span class="motif">MOTIF <img src="motif.png" /></span>,  
<br /><span class="tf">MOTIF->TF <img src="/resource_browser/nwfiles/motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="/resource_browser/nwfiles/tf-motif.png" /></span>
<br /><span class="tf">MOTIF->TF <img src="motif-tf.png" /></span>, <span class="motif">TF->MOTIF <img src="tf-motif.png" /></span>


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<li><a href="#properties_panel">Data</a></li>
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<br /><input type="checkbox" id="cyto_edge_labels"> Edges</td></tr>
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        <div id="filter_panel">


<label class="filter">Show edges:</label>
<label class="filter">Show edges:</label>
<input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input>
<input type="checkbox" id="cyto_edges_binds_to" checked>TF->MOTIF</input>
<br /><input type="checkbox" id="cyto_edges_promotes" checked>Promoters</input>
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<input type="checkbox" id="cyto_nodes_tf_src" checked>Source TF (Outdegree = 1)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" checked>Target TF (Outdegree = 0)</input>
<br /><input type="checkbox" id="cyto_nodes_tf" checked>Target TF (Outdegree = 0)</input>
<br /><input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input>
<br /><input type="checkbox" id="cyto_nodes_motif" checked>MOTIF</input>
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<table id="edges_list" class="wikitable">
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<button id="btn_exportSIF">sif</button>
<button id="btn_exportJSON">JSON</button>
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<button id="btn_exportPDF">PDF</button>
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         <script type="text/javascript" src="/resource_browser/rb_js/cytoscapeweb/js/min/cytoscapeweb.min.js"></script>
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};
};
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</html>
</html>

Revision as of 10:34, 23 May 2012

FF:10717-109I6, TF to Motif to TF network

Mouseover nodes and edges to see attributes. Motifs are shown in orange, TFs are shown in blue. Promoter and z-score are attributes of the Motif to TF edges (blue arrow). TF to Motif edges are shown in orange.

Motifs shown are the top (maximum 30) motifs in the sample. TFs shown have at least one CAGE promoter with at at least 10 TPM expression (RLE normalized) in the sample. Edges shown have a z-score of at least 1.5 (based on correlation between motif activity and promoter expression).

LEGEND: TF , MOTIF ,
MOTIF->TF , TF->MOTIF

Nodes
Edges
TF->MOTIF
Promoters
0.00
1
Source TF (Outdegree = 1)
Target TF (Outdegree = 0)
MOTIF

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