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|full_id=C3623_testis_Smooth_Fibroblast_bone_Melanocyte_Myoblast_Multipotent
|full_id=C3623_testis_Smooth_Fibroblast_bone_Melanocyte_Myoblast_Multipotent
|id=C3623
|id=C3623
|ontology_enrichment_celltype=CL:0002494!1.92e-15!16;CL:0000680!2.79e-10!57;CL:0000056!2.79e-10!57;CL:0000355!2.79e-10!57;CL:0002548!5.21e-10!6;CL:0000187!6.04e-10!54;CL:0000192!9.32e-10!42;CL:0000514!9.32e-10!42;CL:0000359!4.10e-09!32;CL:1000306!6.74e-09!4;CL:0002547!6.74e-09!4;CL:0000183!1.11e-08!59;CL:0000393!1.86e-08!60;CL:0000211!1.86e-08!60;CL:0002590!3.21e-07!3;CL:0000055!6.07e-07!180
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000948!2.46e-11!24;UBERON:0005498!2.46e-11!24;UBERON:0004140!2.46e-11!24;UBERON:0009881!2.46e-11!24;UBERON:0004141!2.46e-11!24;UBERON:0003084!2.46e-11!24;UBERON:0007005!2.46e-11!24;UBERON:0004139!2.46e-11!24;UBERON:0004291!2.46e-11!24;UBERON:0004535!8.19e-11!110;UBERON:0001009!2.62e-10!113;UBERON:0004872!5.23e-10!84;UBERON:0001637!7.31e-10!42;UBERON:0003509!7.31e-10!42;UBERON:0004572!7.31e-10!42;UBERON:0007100!9.85e-10!27;UBERON:0001134!2.92e-09!61;UBERON:0002036!2.92e-09!61;UBERON:0003082!2.92e-09!61;UBERON:0000415!6.74e-09!4;UBERON:0007240!6.74e-09!4;UBERON:0005742!6.74e-09!4;UBERON:0005734!6.74e-09!4;UBERON:0004664!6.74e-09!4;UBERON:0004663!6.74e-09!4;UBERON:0002385!8.40e-09!63;UBERON:0001015!8.40e-09!63;UBERON:0000383!8.40e-09!63;UBERON:0004290!2.38e-08!70;UBERON:0003914!4.59e-08!118;UBERON:0000025!7.86e-08!194;UBERON:0000483!9.00e-08!309;UBERON:0000914!9.22e-08!83;UBERON:0002329!9.22e-08!83;UBERON:0003077!9.22e-08!83;UBERON:0003059!9.22e-08!83;UBERON:0007282!9.22e-08!83;UBERON:0009618!9.22e-08!83;UBERON:0007285!9.22e-08!83;UBERON:0000119!1.43e-07!312;UBERON:0000486!3.38e-07!82;UBERON:0004573!3.43e-07!33;UBERON:0004571!3.43e-07!33;UBERON:0000477!3.53e-07!286;UBERON:0005284!5.15e-07!5
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Revision as of 14:38, 21 May 2012


Full id: C3623_testis_Smooth_Fibroblast_bone_Melanocyte_Myoblast_Multipotent



Phase1 CAGE Peaks

Hg19::chr17:30185899..30185906,-p9@C17orf79
Hg19::chr20:30347712..30347751,+p5@TPX2
Hg19::chr20:30347776..30347785,+p11@TPX2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data


No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
heart2.46e-1124
primitive heart tube2.46e-1124
primary heart field2.46e-1124
anterior lateral plate mesoderm2.46e-1124
heart tube2.46e-1124
heart primordium2.46e-1124
cardiac mesoderm2.46e-1124
cardiogenic plate2.46e-1124
heart rudiment2.46e-1124
cardiovascular system8.19e-11110
circulatory system2.62e-10113
splanchnic layer of lateral plate mesoderm5.23e-1084
artery7.31e-1042
arterial blood vessel7.31e-1042
arterial system7.31e-1042
primary circulatory organ9.85e-1027
skeletal muscle tissue2.92e-0961
striated muscle tissue2.92e-0961
myotome2.92e-0961
artery wall6.74e-094
tunica adventitia of artery6.74e-094
adventitia6.74e-094
tunica adventitia of blood vessel6.74e-094
aorta tunica adventitia6.74e-094
aorta wall6.74e-094
muscle tissue8.40e-0963
musculature8.40e-0963
musculature of body8.40e-0963
dermomyotome2.38e-0870
epithelial tube4.59e-08118
tube7.86e-08194
epithelium9.00e-08309
somite9.22e-0883
paraxial mesoderm9.22e-0883
presomitic mesoderm9.22e-0883
presumptive segmental plate9.22e-0883
trunk paraxial mesoderm9.22e-0883
presumptive paraxial mesoderm9.22e-0883
cell layer1.43e-07312
multilaminar epithelium3.38e-0782
systemic artery3.43e-0733
systemic arterial system3.43e-0733
anatomical cluster3.53e-07286
brain vasculature5.15e-075


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data


No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data


This analysis result is provided for C0 - C305 clusters.