Template:Novel motif: Difference between revisions
From FANTOM5_SSTAR
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<script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script> | <script type="text/javascript" src="/5/sstar/rb_js/html5button/datatables.js"></script> | ||
<script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script> | <script type="text/javascript" src="/5/sstar/rb_js/custom/convert.js"></script> | ||
</script> | |||
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}); | }); | ||
// GREAT table for human/mouse start | // GREAT table for human start | ||
$('#great_table_human').DataTable({ | |||
dom: 'lfrtip', | |||
scrollY: "300px", | |||
scrollCollapse: true, | |||
pageLength: 10, | |||
lengthMenu: [[5,10,-1], [5,10,"All"]], | |||
order: [[ 2, "asc" ]], | |||
columnDefs: [ | |||
{ targets: 0, orderable: false }, | |||
{ targets: 1, orderable: false }, | |||
{ targets: 2, type: "html-number", width: "80pt" } | |||
], | |||
columns: [ | |||
{title: ""}, | |||
{title: ""}, | |||
{title: "FF samples", render: function(data, type, row, meta) { | |||
var num =row[1]; | |||
return exp_converter(num,2,"e") ; | |||
} | |||
} | |||
] | |||
}); | |||
// GREAT table for human end | |||
// GREAT table for mouse start | |||
$('#great_table_human, #great_table_mouse').DataTable({ | $('#great_table_human, #great_table_mouse').DataTable({ | ||
dom: 'lfrtip', | dom: 'lfrtip', | ||
scrollY: "300px", | scrollY: "300px", | ||
scrollCollapse: true, | scrollCollapse: true, | ||
pageLength: 10, | |||
lengthMenu: [[5,10,-1], [5,10,"All"]], | lengthMenu: [[5,10,-1], [5,10,"All"]], | ||
order: [[ 2, "asc" ]], | order: [[ 2, "asc" ]], | ||
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{ targets: 2, type: "html-number", width: "80pt", render: function(data, type, row, meta) { | { targets: 2, type: "html-number", width: "80pt", render: function(data, type, row, meta) { | ||
var num =row[1]; | var num =row[1]; | ||
return exp_converter(num,2,"e"); | return exp_converter(num,2,"e") ; | ||
} | } | ||
} | } | ||
] | ] | ||
}); | }); | ||
// GREAT table for | // GREAT table for mouse end | ||
}); | }); | ||
</script> | </script> | ||
Revision as of 15:04, 17 January 2020
| name: | {{{name}}} |
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Association to promoter expression in human samples<b>Summary:</b>Significance of the correlation with CAGE expression, human <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data
Association to promoter expression in mouse samples
<b>Summary:</b>Significance of the correlation with CAGE expression, mouse <br><b>Analyst:</b> Michiel de Hoon<br><br>link to source dataset <br>data
GREAT analysis results for human
<b>Summary:</b>Genomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon<br><br>link to source dataset <br>data
| GO ID | GO Term | p-value |
|---|---|---|
| {{{great_results_human}}} |
GREAT analysis results for mouseGenomic Enrichment of Annotations Tool (GREAT, Nat Biotechnol. 2010 May;28(5):495-501) is used to identify, both in human and in mouse, the gene ontology terms of biological processes enriched given the predicted TFBSs, and evaluated the overlap in the top-500 gene ontology terms between human and mouse. For each novel motif, the P value for the overlap was then evaluated by calculating its relative rank with respect to this background distribution.<br>Analyst: Michiel de Hoon <br><br>link to source dataset <br>data
| GO ID | GO Term | p-value |
|---|---|---|
| {{{great_results_mouse}}} |
