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Revision as of 17:18, 15 June 2012

Name:cranium
Definition:"Upper portion of the skull that excludes the mandible (when present in the organism)." [Wikipedia:Cranium_(anatomy)]
Xrefs:
links:

BILA:0000115
BTO:0001328
EFO:0000831
EHDAA:6029
EHDAA2:0000325
EMAPA:17680
FMA:71325
MA:0000316
MAT:0000340
MIAA:0000340
OpenCyc:Mx4rvVlEyJwpEbGdrcN5Y29ycA
SCTID:181889008
TAO:0000737
VHOG:0000334
XAO:0003075

ZFA:0000737
Synonyms: "bones of cranium" EXACT [FMA:71325]
"calvarium" RELATED [BTO:0001328]
"cranial skeleton" RELATED []
"epicranial plate" RELATED []
"ossa cranii" EXACT [FMA:71325, FMA:TA]
"skeletal system of head" RELATED []
Comments:The term cranium can be ambiguous, in that it can refer to the neurocranium, or the neurocranium and the Facial skeleton[WP].
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0004765(skeletal element)
part_of:UBERON:0003129(skull)



Children

part of:UBERON:0001703 (neurocranium),UBERON:0004339 (calvarium),UBERON:0004766 (cranial bone)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)

Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003128 (cranium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218682..93218691,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr4:154208086..154208123,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:78257454..78257465, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE2:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr18:38104702..38104718,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459246..154459253,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Dytn
1.87e-86FFCP PHASE2:Mm9::chr1:63733478..63733491,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c07e35bfbcad3a9ca1580153639f40d6p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_c07e35bfbcad3a9ca1580153639f40d6p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr6:86745686..86745727,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_c07e35bfbcad3a9ca1580153639f40d6p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr14:20649897..20649907,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:20649897..20649907, +
1.87e-86FFCP PHASE2:Mm9::chr10:108316802..108316807,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr9:50968647..50968668,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr14:63099970..63099980,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_c07e35bfbcad3a9ca1580153639f40d6p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr3:31585340..31585360,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:31585340..31585360, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843796..172843799,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710455..30710464,-#_c07e35bfbcad3a9ca1580153639f40d6p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr15:97806034..97806061,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556972..115556979,+#_c07e35bfbcad3a9ca1580153639f40d6p3@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr9:92087926..92087938,+#_c07e35bfbcad3a9ca1580153639f40d6p2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chr9:42206730..42206739,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE2:Mm9::chr3:58626291..58626298,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_c07e35bfbcad3a9ca1580153639f40d6p4@Kncn
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr5:3909290..3909299,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr7:27964761..27964768,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr7:27964761..27964768, +
1.87e-86FFCP PHASE2:Mm9::chr8:125802236..125802251,-#_c07e35bfbcad3a9ca1580153639f40d6p3@Fanca
1.87e-86FFCP PHASE2:Mm9::chr11:4689776..4689785,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr13:48087761..48087775,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr4:151505798..151505818,-#_c07e35bfbcad3a9ca1580153639f40d6p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_c07e35bfbcad3a9ca1580153639f40d6p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c07e35bfbcad3a9ca1580153639f40d6p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:77084875..77084885, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr9:42208023..42208043,-#_c07e35bfbcad3a9ca1580153639f40d6p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr17:13983102..13983126, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c07e35bfbcad3a9ca1580153639f40d6p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_c07e35bfbcad3a9ca1580153639f40d6p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c07e35bfbcad3a9ca1580153639f40d6p@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_c07e35bfbcad3a9ca1580153639f40d6p@chr9:42207697..42207705, -

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