UBERON:0002385: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0002385
|name=muscle tissue
|namespace=
|def="Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourc...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:16, 15 June 2012
| Name: | muscle tissue | ||
|---|---|---|---|
| Definition: | "Muscle tissue is a contractile tissue made up of actin and myosin fibers[GO]." [GO:0060537, https://sourceforge.net/tracker/index.php?func=detail&aid=2801266&group_id=36855&atid=440764, Wikipedia:Muscle_tissue] | ||
| Xrefs: |
| ||
| Synonyms: |
"muscle tissue" EXACT SENSU [] "portion of muscle tissue" EXACT [FMA:9641] "textus muscularis" EXACT [] | ||
| Comments: | Vertebrate muscle is categorized into three major muscle types defined by their structural and functional properties: skeletal, cardiac and smooth. In Dmel the counterparts are somatic, heart/cardiac and visceral. Here we take a cell type based approach. | ||
| Alt_id: | UBERON:FMA_9641-MA_0002437 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004120(mesoderm-derived structure) |
|---|---|
| disjoint_from: | UBERON:0003714(neural tissue) |
| develops_from: | UBERON:0000926(mesoderm) |
| part_of: | UBERON:0000383(musculature of body),UBERON:0001015(musculature) |
Children
| is a: | UBERON:0001135 (smooth muscle tissue),UBERON:0002036 (striated muscle tissue) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
... further results Mouse (Mus musculus)
- 10023-101D5 (skeletal muscle, adult, pool1)
- 10024-101D6 (small intestine, adult, pool1)
- 10048-101G3 (smooth muscle, adult, pool1)
- 10066-101I3 (skeletal muscle, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10094-102C4
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10282-104F3 (skeletal muscle - soleus muscle, donor1)
- 10300-104H3
- 10310-104I4
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002385 (muscle tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.24e-58 | FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9 | p@chrX:160838683..160838694, + |
| 5.24e-58 | FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_aa4c03511afbc565c8643b8bf08921f9 | p@chrX:160838683..160838694, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60 | p@chr12:105433069..105433075, - |
| 5.11e-50 | FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3748792692c28954208a5df3b9ae3a60 | p@chrX:65748600..65748616, + |
| 5.11e-50 | FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3748792692c28954208a5df3b9ae3a60 | p@chr12:105433069..105433075, - |
| 1.47e-48 | FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03 | p@chrX:160838787..160838800, + |
| 1.47e-48 | FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_e01ed7b07d4c41d4cd99ace6852cac03 | p@chrX:160838787..160838800, + |
| 1.23e-45 | FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720 | p@chr6:53359400..53359406, + |
| 1.23e-45 | FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_c814005cc9c0b53b7dd92ddafc62e720 | p@chr6:53359400..53359406, + |
| 8.42e-44 | FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95 | p@chr11:81849982..81850000, + |
| 8.42e-44 | FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_fdb744f45703c2473e67333f973d8b95 | p@chr11:81849982..81850000, + |
| 1.15e-40 | FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1 | p@chr17:14813242..14813246, - |
| 1.15e-40 | FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_54d6212a69c62a113fdbc6a5a2b780e1 | p@chr17:14813242..14813246, - |
| 3.7e-39 | FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39d | p4@Gpr39 |
| 3.7e-39 | FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_daa978af111faa2709115cbf83e7e39d | p4@Gpr39 |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840048..160840057, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840025..160840037, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160823859..160823870, + |
| 3.75e-39 | FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_04eb7a510408aa54fda6a18868839287 | p@chrX:160840025..160840037, + |
| 4.49e-37 | FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1 | p2@LRRC17 |
| 4.49e-37 | FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_d8175879ce5d60dad729874f177af3c1 | p2@LRRC17 |
| 7.76e-37 | FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383 | p@chr9:35685631..35685657, + |
| 7.76e-37 | FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_fa6366f3a9e42e3268c63795c9bfa383 | p@chr9:35685631..35685657, + |
| 1.55e-35 | FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094 | p8@ARHGAP22 |
| 1.55e-35 | FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_59fe2a0e208e80db9566bf7ab454d094 | p8@ARHGAP22 |
| 3.31e-35 | FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441 | p11@Fam198b |
| 3.31e-35 | FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_9a18d7e61425d806675934fb23b35441 | p11@Fam198b |
| 3.69e-35 | FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43 | p@chr1:127574253..127574264, + |
| 3.69e-35 | FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_b0c6b3370b8e16fefe0d458bbb912a43 | p@chr1:127574253..127574264, + |
| 5.09e-35 | FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33 | p7@Gpr39 |
| 5.09e-35 | FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_eac44526bac96cb4329f0c634572ca33 | p7@Gpr39 |
| 5.98e-35 | FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2 | p11@Gpr39 |
| 5.98e-35 | FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_ec59a564afc6a433865f64d92634d8c2 | p11@Gpr39 |
| 7.03e-35 | FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300 | p@chrX:160839768..160839780, + |
| 7.03e-35 | FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_1bfe5f57f5b180f0b71b8a532806c300 | p@chrX:160839768..160839780, + |
| 1.33e-34 | FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbb | p8@Gpr39 |
| 1.33e-34 | FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_5b9cfbae15479bac05f37fb222c66cbb | p8@Gpr39 |
| 2.4e-34 | FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9 | p4@ARHGAP22 |
| 2.4e-34 | FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_68761a11f39e8131202f580f954bf2a9 | p4@ARHGAP22 |
| 4.34e-34 | FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761 | p1@LRRC17 |
| 4.34e-34 | FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_f7f57c9a1fc4bb9c8b1e4f74c423c761 | p1@LRRC17 |
| 1.01e-33 | FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5 | p@chr11:102661517..102661541, - |
| 1.01e-33 | FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_a77068c368336b5f918844c430d429f5 | p@chr11:102661517..102661541, - |
| 3.36e-33 | FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115 | p@chr4:74703497..74703511, + |
| 3.36e-33 | FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_32991516b439c867baf3d91bfedcf115 | p@chr4:74703497..74703511, + |
| 9.96e-33 | FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973e | p@chr9:35684475..35684520, + |
| 9.96e-33 | FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_223f5de96a97279df38bdbdb0f35973e | p@chr9:35684475..35684520, + |
| 1.11e-32 | FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06 | p@chr4:7846444..7846449, - |
| 1.11e-32 | FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_f28cd18cf9797b88b553c69b7514cc06 | p@chr4:7846444..7846449, - |
| 1.38e-32 | FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8 | p@chr9:35689148..35689192, + |
| 1.38e-32 | FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_6c737aca54e777bb980686c97ffba6e8 | p@chr9:35689148..35689192, + |
| 3.94e-32 | FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4 | p@chr7:96658543..96658553, - |
| 3.94e-32 | FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_737552280314ae5edd23401ce7bce2b4 | p@chr7:96658543..96658553, - |
| 6.63e-32 | FFCP PHASE1:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1 | p3@LRRC17 |
| 6.63e-32 | FFCP PHASE2:Hg19::chr7:102553382..102553397,+#_26c72e61e05a489b71149de27d0b34b1 | p3@LRRC17 |
| 1.03e-31 | FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77 | p2@SASH1 |
| 1.03e-31 | FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_e490aaaed1a4c4e4d468db8a1bc20f77 | p2@SASH1 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p2@Il6 |
| 1.33e-31 | FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p@chr7:91081998..91082010, - |
| 1.33e-31 | FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_d49ced5a7b5a4ca91b9d9296d16cd4b3 | p2@Il6 |
| 1.59e-31 | FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9f | p@chr10:67598037..67598049, - |
| 1.59e-31 | FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_873e88d30d4d4c0f232b46a13e90cd9f | p@chr10:67598037..67598049, - |
| 2.52e-31 | FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3b | p@chr9:35685445..35685517, + |
| 2.52e-31 | FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_ff03558fde2dc10d46cd77d94b84be3b | p@chr9:35685445..35685517, + |
| 2.72e-31 | FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eae | p@chr2:65009852..65009866, - |
| 2.72e-31 | FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_c8c7504415e5ec9b196f634fe8095eae | p@chr2:65009852..65009866, - |
| 2.8e-31 | FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209b | p@chr18:52678391..52678395, - |
| 2.8e-31 | FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_9df5aee9319af3dc8b0c181181c2209b | p@chr18:52678391..52678395, - |
| 4.49e-31 | FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945 | p@chr2:134548872..134548879, - |
| 4.49e-31 | FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_4adc3c4344db07556f9d49bbaa3d6945 | p@chr2:134548872..134548879, - |
| 4.6e-31 | FFCP PHASE1:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977a | p2@CXCL6 |
| 4.6e-31 | FFCP PHASE2:Hg19::chr4:74702338..74702349,+#_3e41dc1327d43addfc5d1657087e977a | p2@CXCL6 |
| 6.22e-31 | FFCP PHASE2:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668 | p@chr4:169059590..169059615, + |
| 6.22e-31 | FFCP PHASE1:Hg19::chr4:169059590..169059615,+#_876edba34b67e14387374513a7c5d668 | p@chr4:169059590..169059615, + |
| 7.65e-31 | FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464 | p@chr6:91222095..91222107, + |
| 7.65e-31 | FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_fe5411003f5ef30ff61711e4c791d464 | p@chr6:91222095..91222107, + |
| 1.01e-30 | FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3 | p9@Kctd10 |
| 1.01e-30 | FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_444388b63315ac3148e05538fdb2c2e3 | p9@Kctd10 |
| 1.17e-30 | FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43 | p6@Gpr39 |
| 1.17e-30 | FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_c72b3e79ca9f4deb122d21c5e28a5b43 | p6@Gpr39 |
| 1.33e-30 | FFCP PHASE2:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010 | p1@BDKRB1 |
| 1.33e-30 | FFCP PHASE1:Hg19::chr14:96722539..96722555,+#_37a2f1bb9b914231e71a977162ece010 | p1@BDKRB1 |
| 1.34e-30 | FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7 | p3@IFI27L2 |
| 1.34e-30 | FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_dde89f57ce793849d249ec6b5ce9f0f7 | p3@IFI27L2 |
| 1.55e-30 | FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363 | p1@CU675118 |
| 1.55e-30 | FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_658014c4835cb52ba0141dd2d469a363 | p1@CU675118 |
| 1.72e-30 | FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bd | p2@ELTD1 |
| 1.72e-30 | FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_fc3f529b92f900666b8c4fd6bcfae3bd | p2@ELTD1 |
| 6.51e-30 | FFCP PHASE2:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42 | p3@CXCL6 |
| 6.51e-30 | FFCP PHASE1:Hg19::chr4:74702666..74702694,+#_b5d9abdd484013ae92433cfe007f8d42 | p3@CXCL6 |
| 7.66e-30 | FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3e | p@chr9:35685273..35685313, + |
| 7.66e-30 | FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_0108ba378efc093843c85c5278bd8a3e | p@chr9:35685273..35685313, + |
| 8.47e-30 | FFCP PHASE2:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280 | p@chr7:34998469..34998489, - |
| 8.47e-30 | FFCP PHASE1:Mm9::chr7:34998469..34998489,-#_1be544ee710994c2d8bef874ef891280 | p@chr7:34998469..34998489, - |
| 8.84e-30 | FFCP PHASE2:Mm9::chr9:102766842..102766853,+#_3b4a0231815d7955ac369538fa5afd6a | p@chr9:102766842..102766853, + |
| 8.84e-30 | FFCP PHASE1:Mm9::chr1:180919481..180919491,-#_3b4a0231815d7955ac369538fa5afd6a | p4@Smyd3 |
