UBERON:0001802: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0001802
|name=posterior segment of eyeball
|namespace=
|def="The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid...") |
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|part_of=UBERON:0000019 | |part_of=UBERON:0000019 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:13, 15 June 2012
| Name: | posterior segment of eyeball | ||
|---|---|---|---|
| Definition: | "The posterior segment is the back two-thirds of the eye that includes the anterior hyaloid membrane and all structures behind it: the vitreous humor, retina, choroid, and optic nerve. On the anterior side of the lens is the aqueous humour which is bounded on all sides by the lens, ciliary body, suspensory ligaments, and by the cornea. It lets light through without refraction, helps maintain the shape of the eye and suspends the delicate lens. In some animals, the retina contains a reflective layer (the tapetum lucidum) which increases the amount of light each photosensitive cell perceives, allowing the animal to see better under low light conditions." [Wikipedia:Posterior_segment_of_eyeball] | ||
| Xrefs: |
| ||
| Synonyms: |
"eye posterior segment" EXACT [] "posterior segment of eye" EXACT [] "posterior segment of the eye" EXACT [] "segmentum posterius (bulbus oculi)" EXACT [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_58868-MA_0002485 | ||
| Subset: | vertebrate_core |
200px-Schematic_diagram_of_the_human_eye_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000063(organ segment),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000019(camera-type eye) |
Children
| part of: | UBERON:0000966 (retina),UBERON:0001799 (vitreous chamber of eyeball) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10296-104G8
- 10324-105A9
- 10440-106E8
- 10475-106I7 (retinoblastoma cell line:Y79)
- 10671-109D5
- 10672-109D6
- 10673-109D7
- 10674-109D8
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001802 (posterior segment of eyeball), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.07e-130 | FFCP PHASE1:Hg19::chr13:99135322..99135327,-#_dae2cf7647372571ca6e3e0c25069966 | p@chr13:99135322..99135327, - |
| 1.07e-130 | FFCP PHASE2:Hg19::chr13:99135322..99135327,-#_dae2cf7647372571ca6e3e0c25069966 | p@chr13:99135322..99135327, - |
| 1.07e-130 | FFCP PHASE1:Hg19::chr13:51913806..51913817,+#_dae2cf7647372571ca6e3e0c25069966 | p2@SERPINE3 |
| 1.07e-130 | FFCP PHASE2:Hg19::chr13:51913806..51913817,+#_dae2cf7647372571ca6e3e0c25069966 | p2@SERPINE3 |
| 5.17e-105 | FFCP PHASE1:Hg19::chr11:109990513..109990520,-#_c8fab651bb826bc9b2070adfce26b021 | p@chr11:109990513..109990520, - |
| 5.17e-105 | FFCP PHASE2:Hg19::chr11:109990513..109990520,-#_c8fab651bb826bc9b2070adfce26b021 | p@chr11:109990513..109990520, - |
| 1.51e-104 | FFCP PHASE2:Hg19::chr5:70308745..70308754,-#_e1df75cd2feb74d331c69caf39f483e3 | p@chr5:70308745..70308754, - |
| 1.51e-104 | FFCP PHASE1:Hg19::chr5:70308745..70308754,-#_e1df75cd2feb74d331c69caf39f483e3 | p@chr5:70308745..70308754, - |
| 4.11e-102 | FFCP PHASE2:Hg19::chr3:69928404..69928418,+#_0c8f254ff6e6272c1ad02668a3e008d2 | p@chr3:69928404..69928418, + |
| 4.11e-102 | FFCP PHASE1:Hg19::chr3:69928404..69928418,+#_0c8f254ff6e6272c1ad02668a3e008d2 | p@chr3:69928404..69928418, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:45166274..45166281,-#_476b4a8ccb819b77a7233f39b7fedf9f | p5@ENST00000437916 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:61522820..61522823,+#_476b4a8ccb819b77a7233f39b7fedf9f | p9@C11orf9 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:147150847..147150854,-#_476b4a8ccb819b77a7233f39b7fedf9f | p@chr1:147150847..147150854, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr11:61522820..61522823,+#_476b4a8ccb819b77a7233f39b7fedf9f | p9@C11orf9 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:45166274..45166281,-#_476b4a8ccb819b77a7233f39b7fedf9f | p5@ENST00000437916 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:147150847..147150854,-#_476b4a8ccb819b77a7233f39b7fedf9f | p@chr1:147150847..147150854, - |
| 7.0e-88 | FFCP PHASE1:Hg19::chr11:61522844..61522875,+#_08b14c3ba76cd6f5e3530016e749eeed | p2@C11orf9 |
| 7.0e-88 | FFCP PHASE2:Hg19::chr11:61522844..61522875,+#_08b14c3ba76cd6f5e3530016e749eeed | p2@C11orf9 |
| 1.37e-87 | FFCP PHASE2:Hg19::chr17:932340..932343,-#_8a00a6088b965f7ea52ecfc2fce3f86e | p@chr17:932340..932343, - |
| 1.37e-87 | FFCP PHASE1:Hg19::chr17:932340..932343,-#_8a00a6088b965f7ea52ecfc2fce3f86e | p@chr17:932340..932343, - |
| 1.22e-75 | FFCP PHASE2:Hg19::chr13:51913819..51913838,+#_0036716d168656208bd0535b24c3fc10 | p1@SERPINE3 |
| 1.22e-75 | FFCP PHASE1:Hg19::chr13:51913819..51913838,+#_0036716d168656208bd0535b24c3fc10 | p1@SERPINE3 |
| 2.63e-75 | FFCP PHASE1:Hg19::chr2:219610798..219610810,+#_dff846678ea33347359f84254340f91a | p17@TTLL4 |
| 2.63e-75 | FFCP PHASE2:Hg19::chr2:219610798..219610810,+#_dff846678ea33347359f84254340f91a | p17@TTLL4 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr22:41734286..41734290,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr22:41734286..41734290, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr1:153476496..153476503,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr1:153476496..153476503, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr3:39827273..39827281,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr3:39827273..39827281, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr12:208274..208283,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr12:208274..208283, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:51913893..51913901,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr13:51913893..51913901, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr12:208292..208304,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr12:208292..208304, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr21:45724075..45724081,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr21:45724075..45724081, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr12:208292..208304,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr12:208292..208304, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr2:165170873..165170919,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr2:165170873..165170919, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr13:99135420..99135443,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr13:99135420..99135443, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr11:639444..639447,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr11:639444..639447, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr22:41734286..41734290,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr22:41734286..41734290, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:51913893..51913901,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr13:51913893..51913901, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr1:153476496..153476503,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr1:153476496..153476503, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr18:39859562..39859566,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr18:39859562..39859566, + |
| 2.83e-66 | FFCP PHASE2:Hg19::chr13:99135420..99135443,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr13:99135420..99135443, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr5:149250331..149250335, - |
| 2.83e-66 | FFCP PHASE2:Hg19::chr21:45724075..45724081,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr21:45724075..45724081, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr18:39859562..39859566, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr3:39827273..39827281, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr15:69850503..69850506,+#_e5e4ec6684402edca3888fe61ceb30bf | p3@ENST00000558781 |
| 2.83e-66 | FFCP PHASE2:Hg19::chr17:1420239..1420279,-#_e5e4ec6684402edca3888fe61ceb30bf | p9@INPP5K |
| 2.83e-66 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_e5e4ec6684402edca3888fe61ceb30bf | p3@ENST00000558781 |
| 2.83e-66 | FFCP PHASE1:Hg19::chr17:1420239..1420279,-#_e5e4ec6684402edca3888fe61ceb30bf | p9@INPP5K |
| 2.83e-66 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr5:149250331..149250335, - |
| 2.83e-66 | FFCP PHASE1:Hg19::chr11:639444..639447,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr11:639444..639447, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr12:208274..208283,+#_e5e4ec6684402edca3888fe61ceb30bf | p@chr12:208274..208283, + |
| 2.83e-66 | FFCP PHASE1:Hg19::chr2:165170873..165170919,-#_e5e4ec6684402edca3888fe61ceb30bf | p@chr2:165170873..165170919, - |
| 4.34e-66 | FFCP PHASE2:Hg19::chr3:69928426..69928436,+#_6f948b74f451a0d9fc05253df99a5cca | p@chr3:69928426..69928436, + |
| 4.34e-66 | FFCP PHASE1:Hg19::chr3:69928426..69928436,+#_6f948b74f451a0d9fc05253df99a5cca | p@chr3:69928426..69928436, + |
| 5.13e-66 | FFCP PHASE1:Hg19::chr1:43533230..43533270,+#_53ee08804c0fea404ff55d763064f44a | p@chr1:43533230..43533270, + |
| 5.13e-66 | FFCP PHASE2:Hg19::chr1:43533230..43533270,+#_53ee08804c0fea404ff55d763064f44a | p@chr1:43533230..43533270, + |
| 1.01e-59 | FFCP PHASE2:Hg19::chr9:140088882..140088898,-#_e059aa514a8e2ed5a1dfe38d5232fc89 | p@chr9:140088882..140088898, - |
| 1.01e-59 | FFCP PHASE1:Hg19::chr9:140088882..140088898,-#_e059aa514a8e2ed5a1dfe38d5232fc89 | p@chr9:140088882..140088898, - |
| 1.82e-59 | FFCP PHASE1:Hg19::chr11:119217442..119217445,-#_d084434131a0ebe215d2e2fb1c6ab826 | p5@MFRP, p6@C1QTNF5 |
| 1.82e-59 | FFCP PHASE2:Hg19::chr11:119217442..119217445,-#_d084434131a0ebe215d2e2fb1c6ab826 | p5@MFRP, p6@C1QTNF5 |
| 1.82e-59 | FFCP PHASE2:Hg19::chr16:84228961..84228982,+#_d084434131a0ebe215d2e2fb1c6ab826 | p@chr16:84228961..84228982, + |
| 1.82e-59 | FFCP PHASE1:Hg19::chr16:84228961..84228982,+#_d084434131a0ebe215d2e2fb1c6ab826 | p@chr16:84228961..84228982, + |
| 6.44e-59 | FFCP PHASE2:Hg19::chr21:36041275..36041282,+#_c61e59ced61219d34f6fa989e2accae9 | p5@CLIC6 |
| 6.44e-59 | FFCP PHASE1:Hg19::chr21:36041275..36041282,+#_c61e59ced61219d34f6fa989e2accae9 | p5@CLIC6 |
| 1.58e-53 | FFCP PHASE2:Hg19::chr13:99135278..99135298,-#_f35100619fd5ee93cb6ccfb0e5ad5cec | p@chr13:99135278..99135298, - |
| 1.58e-53 | FFCP PHASE1:Hg19::chr13:99135278..99135298,-#_f35100619fd5ee93cb6ccfb0e5ad5cec | p@chr13:99135278..99135298, - |
| 9.03e-53 | FFCP PHASE1:Hg19::chr1:205226309..205226329,+#_c90b9fecd39bb645110b41b4b5932ab7 | p4@TMCC2 |
| 9.03e-53 | FFCP PHASE2:Hg19::chr1:205226309..205226329,+#_c90b9fecd39bb645110b41b4b5932ab7 | p4@TMCC2 |
| 3.84e-50 | FFCP PHASE2:Hg19::chr17:932596..932605,-#_e8943e838983e99c243aa5e983fb1e9c | p@chr17:932596..932605, - |
| 3.84e-50 | FFCP PHASE1:Hg19::chr17:932596..932605,-#_e8943e838983e99c243aa5e983fb1e9c | p@chr17:932596..932605, - |
| 5.37e-50 | FFCP PHASE1:Hg19::chr22:38480132..38480159,-#_e0fb79b838ef05e0faff6aabfa1dfc4a | p1@SLC16A8 |
| 5.37e-50 | FFCP PHASE2:Hg19::chr22:38480132..38480159,-#_e0fb79b838ef05e0faff6aabfa1dfc4a | p1@SLC16A8 |
| 8.88e-50 | FFCP PHASE1:Hg19::chr2:235591306..235591328,+#_0cd43cf459b2575da876ba3fb349ff38 | p@chr2:235591306..235591328, + |
| 8.88e-50 | FFCP PHASE2:Hg19::chr2:235591306..235591328,+#_0cd43cf459b2575da876ba3fb349ff38 | p@chr2:235591306..235591328, + |
| 1.05e-49 | FFCP PHASE2:Hg19::chr3:183733654..183733680,-#_310bbe833dd50e17be7161154daa8855 | p@chr3:183733654..183733680, - |
| 1.05e-49 | FFCP PHASE2:Hg19::chrX:96819517..96819540,-#_310bbe833dd50e17be7161154daa8855 | p1@DIAPH2-AS1 |
| 1.05e-49 | FFCP PHASE1:Hg19::chrX:96819517..96819540,-#_310bbe833dd50e17be7161154daa8855 | p1@DIAPH2-AS1 |
| 1.05e-49 | FFCP PHASE1:Hg19::chr3:183733654..183733680,-#_310bbe833dd50e17be7161154daa8855 | p@chr3:183733654..183733680, - |
| 1.24e-49 | FFCP PHASE2:Hg19::chr16:89441550..89441568,-#_042c2c89886350527b5a40fe46adf356 | p@chr16:89441550..89441568, - |
| 1.24e-49 | FFCP PHASE1:Hg19::chr16:89441550..89441568,-#_042c2c89886350527b5a40fe46adf356 | p@chr16:89441550..89441568, - |
| 1.73e-49 | FFCP PHASE1:Hg19::chr3:98672197..98672201,+#_59fd954d77a2bab78931bbb8f5f06af3 | p@chr3:98672197..98672201, + |
| 1.73e-49 | FFCP PHASE2:Hg19::chr3:98672197..98672201,+#_59fd954d77a2bab78931bbb8f5f06af3 | p@chr3:98672197..98672201, + |
| 5.28e-49 | FFCP PHASE1:Hg19::chr14:57277163..57277168,-#_d6ae7d775d68148837dd847177c81a3a | p4@OTX2 |
| 5.28e-49 | FFCP PHASE2:Hg19::chr14:57277163..57277168,-#_d6ae7d775d68148837dd847177c81a3a | p4@OTX2 |
| 9.58e-49 | FFCP PHASE1:Hg19::chr14:87636652..87636657,-#_5af2dad88c3b7d73f5ae9459d54378c5 | p@chr14:87636652..87636657, - |
| 9.58e-49 | FFCP PHASE2:Hg19::chr14:87636652..87636657,-#_5af2dad88c3b7d73f5ae9459d54378c5 | p@chr14:87636652..87636657, - |
| 1.38e-48 | FFCP PHASE1:Hg19::chr3:69928371..69928385,+#_de0cd346005d334cfd3d85dad8c636e1 | p@chr3:69928371..69928385, + |
| 1.38e-48 | FFCP PHASE2:Hg19::chr3:69928371..69928385,+#_de0cd346005d334cfd3d85dad8c636e1 | p@chr3:69928371..69928385, + |
| 2.88e-48 | FFCP PHASE2:Hg19::chr12:78359999..78360035,+#_d344c63745c2c418d6352cbae7a63bf2 | p13@NAV3 |
| 2.88e-48 | FFCP PHASE1:Hg19::chr12:78359999..78360035,+#_d344c63745c2c418d6352cbae7a63bf2 | p13@NAV3 |
| 3.25e-48 | FFCP PHASE1:Hg19::chr1:53608289..53608315,-#_9319ff0c6bc492bb8cc064ebe0198711 | p1@SLC1A7 |
| 3.25e-48 | FFCP PHASE2:Hg19::chr1:53608289..53608315,-#_9319ff0c6bc492bb8cc064ebe0198711 | p1@SLC1A7 |
| 6.65e-45 | FFCP PHASE2:Hg19::chr21:36041264..36041274,+#_102876e6ff67aa9c5c9f55a2f172a66d | p3@CLIC6 |
| 6.65e-45 | FFCP PHASE1:Hg19::chr21:36041264..36041274,+#_102876e6ff67aa9c5c9f55a2f172a66d | p3@CLIC6 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr2:219610770..219610777,+#_a62b1f020e97496fa3e5bccef6ee783d | p19@TTLL4 |
| 9.76e-45 | FFCP PHASE2:Hg19::chr5:82640256..82640260,+#_a62b1f020e97496fa3e5bccef6ee783d | p@chr5:82640256..82640260, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr7:129028525..129028531,+#_a62b1f020e97496fa3e5bccef6ee783d | p32@AHCYL2 |
| 9.76e-45 | FFCP PHASE1:Hg19::chr9:111764519..111764525,-#_a62b1f020e97496fa3e5bccef6ee783d | p@chr9:111764519..111764525, - |
| 9.76e-45 | FFCP PHASE1:Hg19::chr5:82640256..82640260,+#_a62b1f020e97496fa3e5bccef6ee783d | p@chr5:82640256..82640260, + |
| 9.76e-45 | FFCP PHASE1:Hg19::chr21:16031159..16031171,-#_a62b1f020e97496fa3e5bccef6ee783d | p3@LOC388813 |
