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Revision as of 17:10, 15 June 2012

Name:cranial nerve II
Definition:"Cranial nerve which is comprised of retinal ganglion cell axons running posterior medially towards the optic chiasm, at which some of the axons cross the midline and after which the structure is termed the optic tract. Transmits visual information from the retina to the brain[ZFA]." [ISBN:0471209627, Wikipedia:Optic_nerve, ZFIN:curator]
Xrefs:
links:

AAO:0010345
EHDAA:6788
EHDAA2:0001313
EMAPA:17575
EMAPA:17846
FMA:50863
GAID:831
MA:0001097
MESH:A.08.800.800.120.680
ncithesaurus:Optic_Nerve
NIF_GrossAnatomy:birnlex_1640
OpenCyc:Mx4rvVjLm5wpEbGdrcN5Y29ycA
TAO:0000435
VHOG:0000543
XAO:0000188

ZFA:0000435
Synonyms: "CN-II" RELATED []
"nervus opticus [ii]" EXACT [FMA:50863, FMA:TA]
"optic" RELATED []
"optic II" EXACT [EHDAA2:0001313]
"optic II nerve" EXACT []
"optic nerve" BROAD SENSU [FMA:50863]
"optic nerve [II]" EXACT []
"second cranial nerve" EXACT []
Comments:todo - determine the precise relationship between CN II and the CNS
Alt_id: UBERON:FBbt_00001956-FMA_50863-MA_0001097-XAO_0000188-ZFA_0000435
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002464(nerve trunk),UBERON:0004904(nerve connecting eye with brain)
part_of:UBERON:0002104(visual system)



Children

derives from:FF:0011166 (human optic nerve sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000941 (cranial nerve II), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_b410062e5e3210cec6cadee190efeb01p@chr12:57628762..57628773, -
5.42e-195FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_b410062e5e3210cec6cadee190efeb01p@chr12:57628762..57628773, -
9.37e-99FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_fb3d956da5b1429f8324104720c91dc1p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_fb3d956da5b1429f8324104720c91dc1p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_fb3d956da5b1429f8324104720c91dc1p@chr5:151258901..151258902, +
9.37e-99FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_fb3d956da5b1429f8324104720c91dc1p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_fb3d956da5b1429f8324104720c91dc1p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_fb3d956da5b1429f8324104720c91dc1p@chr1:62928606..62928608, +
9.37e-99FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_fb3d956da5b1429f8324104720c91dc1p@chr5:149250331..149250335, -
9.37e-99FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_fb3d956da5b1429f8324104720c91dc1p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_fb3d956da5b1429f8324104720c91dc1p@chr2:188432107..188432111, +
9.37e-99FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_fb3d956da5b1429f8324104720c91dc1p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_fb3d956da5b1429f8324104720c91dc1p@chr18:74702556..74702558, -
9.37e-99FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_fb3d956da5b1429f8324104720c91dc1p@chr7:15056365..15056368, -
9.37e-99FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_fb3d956da5b1429f8324104720c91dc1p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_fb3d956da5b1429f8324104720c91dc1p@chr14:105807545..105807554, +
9.37e-99FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_fb3d956da5b1429f8324104720c91dc1p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_fb3d956da5b1429f8324104720c91dc1p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_fb3d956da5b1429f8324104720c91dc1p@chr2:60133192..60133194, -
9.37e-99FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_fb3d956da5b1429f8324104720c91dc1p@chr18:25161980..25161984, -
9.37e-99FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_fb3d956da5b1429f8324104720c91dc1p@chr4:127394496..127394500, -
9.37e-99FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_fb3d956da5b1429f8324104720c91dc1p@chr4:127394496..127394500, -
2.55e-98FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_6c40f5564be44919d423f220825d7960p3@ENST00000558781
2.55e-98FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_6c40f5564be44919d423f220825d7960p10@ALK
2.55e-98FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_6c40f5564be44919d423f220825d7960p@chrX:131884370..131884375, -
2.55e-98FFCP PHASE1:Hg19::chr16:51174920..51174928,-#_6c40f5564be44919d423f220825d7960p@chr16:51174920..51174928, -
2.55e-98FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_6c40f5564be44919d423f220825d7960p@chr4:139590958..139590961, -
2.55e-98FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_6c40f5564be44919d423f220825d7960p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr12:72875355..72875358,+#_6c40f5564be44919d423f220825d7960p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_6c40f5564be44919d423f220825d7960p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_6c40f5564be44919d423f220825d7960p@chr11:2435409..2435443, -
2.55e-98FFCP PHASE1:Hg19::chr10:37679189..37679193,+#_6c40f5564be44919d423f220825d7960p@chr10:37679189..37679193, +
2.55e-98FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_6c40f5564be44919d423f220825d7960p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_6c40f5564be44919d423f220825d7960p10@ALK
2.55e-98FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_6c40f5564be44919d423f220825d7960p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_6c40f5564be44919d423f220825d7960p@chr11:79291300..79291301, +
2.55e-98FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_6c40f5564be44919d423f220825d7960p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_6c40f5564be44919d423f220825d7960p@chr9:74167667..74167687, -
2.55e-98FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_6c40f5564be44919d423f220825d7960p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_6c40f5564be44919d423f220825d7960p@chr8:133945378..133945386, +
2.55e-98FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_6c40f5564be44919d423f220825d7960p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_6c40f5564be44919d423f220825d7960p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE1:Hg19::chr14:68589926..68589929,+#_6c40f5564be44919d423f220825d7960p@chr14:68589926..68589929, +
2.55e-98FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_6c40f5564be44919d423f220825d7960p@chr9:19514976..19514978, -
2.55e-98FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_6c40f5564be44919d423f220825d7960p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_6c40f5564be44919d423f220825d7960p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_6c40f5564be44919d423f220825d7960p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_6c40f5564be44919d423f220825d7960p2@ATAD3B
2.55e-98FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_6c40f5564be44919d423f220825d7960p@chr2:134472430..134472432, +
2.55e-98FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_6c40f5564be44919d423f220825d7960p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_6c40f5564be44919d423f220825d7960p@chr6:121951983..121951986, +
2.55e-98FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_6c40f5564be44919d423f220825d7960p@chr8:90420477..90420478, -
2.55e-98FFCP PHASE1:Hg19::chr16:70563415..70563420,+#_6c40f5564be44919d423f220825d7960p4@SNORD111B
2.55e-98FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_6c40f5564be44919d423f220825d7960p@chr8:22000519..22000525, -
2.55e-98FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_6c40f5564be44919d423f220825d7960p@chr1:218214846..218214850, -
2.55e-98FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_6c40f5564be44919d423f220825d7960p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr15:36402459..36402465,-#_6c40f5564be44919d423f220825d7960p@chr15:36402459..36402465, -
2.55e-98FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_6c40f5564be44919d423f220825d7960p@chr2:133035182..133035195, -
2.55e-98FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_6c40f5564be44919d423f220825d7960p18@TGFB3
2.55e-98FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_6c40f5564be44919d423f220825d7960p@chr22:30951607..30951613, -
2.55e-98FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_6c40f5564be44919d423f220825d7960p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_6c40f5564be44919d423f220825d7960p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_6c40f5564be44919d423f220825d7960p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_6c40f5564be44919d423f220825d7960p@chr5:111570472..111570478, -
2.55e-98FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_6c40f5564be44919d423f220825d7960p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE1:Hg19::chr16:66170755..66170759,-#_6c40f5564be44919d423f220825d7960p@chr16:66170755..66170759, -
2.55e-98FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_6c40f5564be44919d423f220825d7960p10@NELL1
2.55e-98FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_6c40f5564be44919d423f220825d7960p@chr7:95704857..95704906, +
2.55e-98FFCP PHASE1:Hg19::chr12:59444098..59444102,+#_6c40f5564be44919d423f220825d7960p@chr12:59444098..59444102, +
2.55e-98FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_6c40f5564be44919d423f220825d7960p@chr12:72875355..72875358, +
2.55e-98FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_6c40f5564be44919d423f220825d7960p@chr2:29484252..29484254, -
2.55e-98FFCP PHASE1:Hg19::chr14:76447439..76447452,-#_6c40f5564be44919d423f220825d7960p18@TGFB3
2.55e-98FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_6c40f5564be44919d423f220825d7960p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_6c40f5564be44919d423f220825d7960p4@SNORD111B
2.55e-98FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_6c40f5564be44919d423f220825d7960p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_6c40f5564be44919d423f220825d7960p@chr6:168558338..168558388, -
2.55e-98FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_6c40f5564be44919d423f220825d7960p@chr5:1414652..1414695, +
2.55e-98FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_6c40f5564be44919d423f220825d7960p@chr3:39827273..39827281, +
2.55e-98FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_6c40f5564be44919d423f220825d7960p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_6c40f5564be44919d423f220825d7960p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_6c40f5564be44919d423f220825d7960p25@SOX2-OT
2.55e-98FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_6c40f5564be44919d423f220825d7960p@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr18:45498690..45498695,-#_6c40f5564be44919d423f220825d7960p@chr18:45498690..45498695, -
2.55e-98FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_6c40f5564be44919d423f220825d7960p@chr8:126163123..126163134, +
2.55e-98FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_6c40f5564be44919d423f220825d7960p@chr4:188536760..188536764, -
2.55e-98FFCP PHASE1:Hg19::chr12:127992016..127992052,+#_6c40f5564be44919d423f220825d7960p@chr12:127992016..127992052, +
2.55e-98FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_6c40f5564be44919d423f220825d7960p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_6c40f5564be44919d423f220825d7960p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr7:77789390..77789399,-#_6c40f5564be44919d423f220825d7960p@chr7:77789390..77789399, -
2.55e-98FFCP PHASE2:Hg19::chr19:35978717..35978722,-#_6c40f5564be44919d423f220825d7960p@chr19:35978717..35978722, -
2.55e-98FFCP PHASE1:Hg19::chr12:68567714..68567717,+#_6c40f5564be44919d423f220825d7960p@chr12:68567714..68567717, +
2.55e-98FFCP PHASE2:Hg19::chr7:152790347..152790351,+#_6c40f5564be44919d423f220825d7960p@chr7:152790347..152790351, +
2.55e-98FFCP PHASE1:Hg19::chr5:109466651..109466653,+#_6c40f5564be44919d423f220825d7960p@chr5:109466651..109466653, +
2.55e-98FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_6c40f5564be44919d423f220825d7960p3@BC098451
2.55e-98FFCP PHASE1:Hg19::chr1:7709325..7709329,+#_6c40f5564be44919d423f220825d7960p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr19:48479835..48479841,-#_6c40f5564be44919d423f220825d7960p@chr19:48479835..48479841, -
2.55e-98FFCP PHASE2:Hg19::chr7:103086717..103086724,+#_6c40f5564be44919d423f220825d7960p@chr7:103086717..103086724, +
2.55e-98FFCP PHASE2:Hg19::chr1:7709325..7709329,+#_6c40f5564be44919d423f220825d7960p@chr1:7709325..7709329, +
2.55e-98FFCP PHASE2:Hg19::chr16:19586229..19586233,+#_6c40f5564be44919d423f220825d7960p12@C16orf62
2.55e-98FFCP PHASE2:Hg19::chr10:22768515..22768517,+#_6c40f5564be44919d423f220825d7960p@chr10:22768515..22768517, +

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