UBERON:0000078: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000078
|name=mixed ectoderm/mesoderm/endoderm-derived structure
|namespace=
|def="An anatomical structure that develops from the ectoderm, mesoderm an...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:08, 15 June 2012
| Name: | mixed ectoderm/mesoderm/endoderm-derived structure |
|---|---|
| Definition: | "An anatomical structure that develops from the ectoderm, mesoderm and endoderm." [UBERON:cjm] |
| Comments: | Grouping term for query purposes |
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000061(anatomical structure),UBERON:0000077(mixed endoderm/mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000924(ectoderm),UBERON:0000925(endoderm),UBERON:0000926(mesoderm) |
Children
| is a: | UBERON:0002244 (premaxilla),UBERON:0005620 (primary palate),UBERON:0005705 (primary palate mesenchyme),UBERON:0011628 (early premaxilla) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
- 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
- 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
- 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1 | p@chr6:21648948..21648949, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr4:70707713..70707716, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr8:90366581..90366594, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:21648948..21648949,+#_1de47cf55311a5b003d958580c44f0c1 | p@chr6:21648948..21648949, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:70707713..70707716,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr4:70707713..70707716, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:90366581..90366594,-#_1de47cf55311a5b003d958580c44f0c1 | p@chr8:90366581..90366594, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbe | p@chr4:70707556..70707558, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:70707556..70707558,-#_315302c9ecde85b8b4c24c829951ebbe | p@chr4:70707556..70707558, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671 | p@chrX:23072856..23072859, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr8:120651826..120651840,-#_fc75f50eea503431c035ba31c0fe8671 | p@chr8:120651826..120651840, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671 | p@chr3:158928407..158928414, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:23072856..23072859,-#_fc75f50eea503431c035ba31c0fe8671 | p@chrX:23072856..23072859, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671 | p14@FAS |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:21666284..21666297,+#_fc75f50eea503431c035ba31c0fe8671 | p26@LINC00340 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:90749902..90749913,+#_fc75f50eea503431c035ba31c0fe8671 | p14@FAS |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:158928407..158928414,+#_fc75f50eea503431c035ba31c0fe8671 | p@chr3:158928407..158928414, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508c | p@chr4:70707608..70707615, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:70707608..70707615,-#_cb524191e2c9f8c86fa0116d0645508c | p@chr4:70707608..70707615, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr3:156258392..156258395, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:76824975..76824978,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr17:76824975..76824978, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr11:131614903..131614910, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr11:131614903..131614910,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr11:131614903..131614910, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr4:70690584..70690589,+#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr4:70690584..70690589, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr3:156258392..156258395,-#_4691d0c882be393e3a32d3be9f8a5d45 | p@chr3:156258392..156258395, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:94587086..94587097,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p19@AMOTL1 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p13@PTGIS |
| 7.05e-34 | FFCP PHASE1:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:24645959..24645967, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:38136724..38136726,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr13:38136724..38136726, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:176668544..176668553, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:18834859..18834879,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:18834859..18834879, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:93043102..93043113,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:93043102..93043113, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:38147484..38147500,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:38147484..38147500, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chrX:140904171..140904173,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chrX:140904171..140904173, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr8:134047162..134047169,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr8:134047162..134047169, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr9:16059821..16059828,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr9:16059821..16059828, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:119590894..119590904,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@ENST00000406333 |
| 7.05e-34 | FFCP PHASE2:Hg19::chr20:48184812..48184818,-#_54aaf8aaab320fdea4d4c6b5dff647ce | p13@PTGIS |
| 7.05e-34 | FFCP PHASE2:Hg19::chr4:24645959..24645967,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr4:24645959..24645967, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:22687639..22687644,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr7:22687639..22687644, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr19:54466179..54466202,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p1@CACNG8 |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:176668544..176668553,+#_54aaf8aaab320fdea4d4c6b5dff647ce | p@chr1:176668544..176668553, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59f | p@chr9:33797893..33797903, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:33797893..33797903,+#_e8a723433cd6ce4956dc18da9f0ff59f | p@chr9:33797893..33797903, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr19:15509437..15509442, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:103040652..103040655,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@ENST00000492301 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr8:123580995..123581003, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:34208414..34208429,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p16@HMGA1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr17:61995172..61995199, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr18:65175930..65175941,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr18:65175930..65175941, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:73302288..73302299,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p13@RAB11FIP5 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:15509437..15509442,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr19:15509437..15509442, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:891819..891820,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr4:891819..891820, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:123580995..123581003,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr8:123580995..123581003, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr19:10218330..10218339,+#_730d85a5e8cb02ecf9b97b29e31ddf89 | p1@SNORD105 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr17:61995172..61995199,-#_730d85a5e8cb02ecf9b97b29e31ddf89 | p@chr17:61995172..61995199, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr15:71371688..71371691,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr15:71371688..71371691, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509 | p5@BC031228 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509 | p10@FAM92A1 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:13484984..13484992,+#_c5f7f709704ba344e2f679ac9265a509 | p5@BC031228 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr19:681941..681952, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:238116338..238116342, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr1:185703364..185703371, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:37374492..37374499,-#_c5f7f709704ba344e2f679ac9265a509 | p1@ENST00000521989 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr4:74392579..74392583,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr4:74392579..74392583, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr5:146890197..146890224,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr5:146890197..146890224, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:84316409..84316414,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:84316409..84316414, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr3:11675748..11675759, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr4:114257151..114257163,+#_c5f7f709704ba344e2f679ac9265a509 | p28@ANK2 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:94712896..94712909,+#_c5f7f709704ba344e2f679ac9265a509 | p10@FAM92A1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:238116338..238116342,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr2:238116338..238116342, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr1:185703364..185703371,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr1:185703364..185703371, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr19:681941..681952,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr19:681941..681952, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:148593641..148593643,+#_c5f7f709704ba344e2f679ac9265a509 | p@chr6:148593641..148593643, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr9:33797981..33798005,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr9:33797981..33798005, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr3:11675748..11675759,-#_c5f7f709704ba344e2f679ac9265a509 | p@chr3:11675748..11675759, - |
