FFCP PHASE2:Hg19::chr5:82767238..82767265,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:1462 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:2464 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=1462 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=2464 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P13611 | ||
|association_with_transcript=-18bp_to_ENST00000265077_5end | |association_with_transcript=-18bp_to_ENST00000265077_5end | ||
|cluster_id=chr5:82767238..82767265,+ | |cluster_id=chr5:82767238..82767265,+ | ||
Latest revision as of 00:37, 19 September 2015
| Short description: | p6@VCAN |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_6_at_VCAN_5end |
| Coexpression cluster: | C4523_Fibroblast_iPS_H9_serous_Smooth_HES3GFP_hepatoblastoma |
| Association with transcript: | -18bp_to_ENST00000265077_5end |
| EntrezGene: | VCAN |
| HGNC: | 2464 |
| UniProt: | P13611 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p6@VCAN |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| classical monocyte | 2.48e-14 | 42 |
| CD14-positive, CD16-negative classical monocyte | 2.48e-14 | 42 |
| defensive cell | 7.07e-11 | 48 |
| phagocyte | 7.07e-11 | 48 |
| electrically responsive cell | 2.55e-10 | 61 |
| electrically active cell | 2.55e-10 | 61 |
| stem cell | 7.87e-08 | 441 |
| muscle cell | 1.60e-07 | 55 |
| muscle precursor cell | 3.46e-07 | 58 |
| myoblast | 3.46e-07 | 58 |
Showing 1 to 10 of 16 entries
| Ontology term | p-value | n |
|---|---|---|
| musculoskeletal system | 1.34e-08 | 167 |
| heart | 3.57e-07 | 24 |
| primitive heart tube | 3.57e-07 | 24 |
| primary heart field | 3.57e-07 | 24 |
| anterior lateral plate mesoderm | 3.57e-07 | 24 |
| heart tube | 3.57e-07 | 24 |
| heart primordium | 3.57e-07 | 24 |
| cardiac mesoderm | 3.57e-07 | 24 |
| cardiogenic plate | 3.57e-07 | 24 |
| heart rudiment | 3.57e-07 | 24 |
Showing 1 to 10 of 16 entries
