UBERON:0004904: Difference between revisions
From FANTOM5_SSTAR
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|located_in= | |located_in= | ||
|name=nerve connecting eye with brain | |name=nerve connecting eye with brain | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002104 | |part_of=UBERON:0002104 | ||
Latest revision as of 17:49, 12 September 2014
| Name: | nerve connecting eye with brain | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A nerve that connects the eye to the brain and carries the impulses formed by the retina to the visual cortex of the brain[BTO]." [BTO:0000966] | ||
| Xrefs: |
| ||
| Synonyms: |
"optic nerve" BROAD [BTO:0000966] "optic nerve (generic)" EXACT [] | ||
| Comments: | for the vertebrate-specific structure, see UBERON:0000941 (cranial nerve II) | ||
| Subset: | grouping_class |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001021(nerve) |
|---|---|
| part_of: | UBERON:0002104(visual system) |
Children
| is a: | UBERON:0000941 (cranial nerve II) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10277-104E7 (optic nerve, donor1)
- 10305-104H8
- 10333-105B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004904 (nerve connecting eye with brain), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE2:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7 | p@chr12:57628762..57628773, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr12:57628762..57628773,-#_e7cfe1bc8f7c505cd20610af6a96eca7 | p@chr12:57628762..57628773, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr4:127394496..127394500, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr4:127394496..127394500,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr4:127394496..127394500, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr14:105807545..105807554, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr18:25161980..25161984, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr5:151258901..151258902, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr1:62928606..62928608, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:151258901..151258902,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr5:151258901..151258902, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr18:74702556..74702558, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr5:149250331..149250335, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr1:62928606..62928608,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr1:62928606..62928608, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr5:149250331..149250335,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr5:149250331..149250335, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr2:188432107..188432111, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:188432107..188432111,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr2:188432107..188432111, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr7:15056365..15056368, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr18:74702556..74702558, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:15056365..15056368,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr7:15056365..15056368, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr14:105807545..105807554,+#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr14:105807545..105807554, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr2:60133192..60133194, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr2:60133192..60133194,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr2:60133192..60133194, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr18:25161980..25161984,-#_7e0d78cd1c75528ff3c6b23cf3b4439b | p@chr18:25161980..25161984, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:57030314..57030346,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr11:57030314..57030346, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:130221053..130221071,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:130221053..130221071, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr21:22483836..22483880,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr21:22483836..22483880, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:88535666..88535671,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:88535666..88535671, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:154942133..154942148,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr1:154942133..154942148, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:85119696..85119699,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr14:85119696..85119699, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:130221053..130221071,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:130221053..130221071, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr21:22483836..22483880,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr21:22483836..22483880, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:51174920..51174928,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr16:51174920..51174928, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:154942133..154942148,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr1:154942133..154942148, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:88034381..88034386,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr14:88034381..88034386, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:27750995..27750997,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr3:27750995..27750997, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:181328346..181328351,+#_284345d22cda2bdcf64430d9e57eebc0 | p22@SOX2-OT |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:68589926..68589929,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr14:68589926..68589929, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:37227792..37227796,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr14:37227792..37227796, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:139590958..139590961,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:139590958..139590961, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:133945378..133945386,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:133945378..133945386, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:2435409..2435443,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr11:2435409..2435443, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:47107522..47107524,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr17:47107522..47107524, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr15:69850503..69850506,+#_284345d22cda2bdcf64430d9e57eebc0 | p3@ENST00000558781 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:30144229..30144240,-#_284345d22cda2bdcf64430d9e57eebc0 | p10@ALK |
| 2.55e-98 | FFCP PHASE1:Hg19::chrX:131884370..131884375,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chrX:131884370..131884375, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:139590958..139590961,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:139590958..139590961, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:74167667..74167687,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr9:74167667..74167687, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:133945378..133945386,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:133945378..133945386, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:90420477..90420478,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:90420477..90420478, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr15:36402459..36402465,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr15:36402459..36402465, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr9:19514976..19514978,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr9:19514976..19514978, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:30144229..30144240,-#_284345d22cda2bdcf64430d9e57eebc0 | p10@ALK |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:1413227..1413230,+#_284345d22cda2bdcf64430d9e57eebc0 | p2@ATAD3B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:79291300..79291301,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr11:79291300..79291301, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:134472430..134472432,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:134472430..134472432, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:74167667..74167687,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr9:74167667..74167687, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:121951983..121951986,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr6:121951983..121951986, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:121951983..121951986,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr6:121951983..121951986, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:90420477..90420478,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:90420477..90420478, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr9:19514976..19514978,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr9:19514976..19514978, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:22000519..22000525,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:22000519..22000525, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr1:218214846..218214850,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr1:218214846..218214850, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr18:39859562..39859566,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr18:39859562..39859566, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:133035182..133035195,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:133035182..133035195, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:1413227..1413230,+#_284345d22cda2bdcf64430d9e57eebc0 | p2@ATAD3B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:134472430..134472432,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:134472430..134472432, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr22:30951607..30951613,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr22:30951607..30951613, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr22:30951607..30951613,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr22:30951607..30951613, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:95704857..95704906,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:95704857..95704906, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:22000519..22000525,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:22000519..22000525, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr1:218214846..218214850,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr1:218214846..218214850, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:111570472..111570478,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr5:111570472..111570478, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:133035182..133035195,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:133035182..133035195, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:76447439..76447452,-#_284345d22cda2bdcf64430d9e57eebc0 | p18@TGFB3 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr13:64423563..64423566,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr13:64423563..64423566, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:20791058..20791067,+#_284345d22cda2bdcf64430d9e57eebc0 | p10@NELL1 |
| 2.55e-98 | FFCP PHASE2:Hg19::chr7:95704857..95704906,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:95704857..95704906, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr2:29484252..29484254,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:29484252..29484254, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:118927879..118927891,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr10:118927879..118927891, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr6:168558338..168558388,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr6:168558338..168558388, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:111570472..111570478,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr5:111570472..111570478, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr5:1414652..1414695,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr5:1414652..1414695, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr17:12935401..12935405,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr17:12935401..12935405, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:72875355..72875358,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr12:72875355..72875358, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr2:29484252..29484254,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr2:29484252..29484254, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr8:126163123..126163134,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:126163123..126163134, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:70563415..70563420,+#_284345d22cda2bdcf64430d9e57eebc0 | p4@SNORD111B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:188536760..188536764,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:188536760..188536764, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr6:168558338..168558388,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr6:168558338..168558388, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr5:1414652..1414695,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr5:1414652..1414695, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr3:39827273..39827281,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr3:39827273..39827281, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:48479835..48479841,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr19:48479835..48479841, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:103086717..103086724,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:103086717..103086724, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:77789390..77789399,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:77789390..77789399, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr19:35978717..35978722,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr19:35978717..35978722, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr3:181328472..181328478,+#_284345d22cda2bdcf64430d9e57eebc0 | p25@SOX2-OT |
| 2.55e-98 | FFCP PHASE1:Hg19::chr14:68527802..68527806,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr14:68527802..68527806, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr7:152790347..152790351,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr7:152790347..152790351, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr8:126163123..126163134,+#_284345d22cda2bdcf64430d9e57eebc0 | p@chr8:126163123..126163134, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:188536760..188536764,-#_284345d22cda2bdcf64430d9e57eebc0 | p@chr4:188536760..188536764, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr14:106176908..106176916,-#_284345d22cda2bdcf64430d9e57eebc0 | p3@BC098451 |
