UBERON:0003422: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=mesenchyme of umbilical cord | |name=mesenchyme of umbilical cord | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0002331 | |part_of=UBERON:0002331 | ||
Latest revision as of 17:40, 12 September 2014
| Name: | mesenchyme of umbilical cord | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "a gelatinous substance within the umbilical cord, largely made up of mucopolysaccharides (hyaluronic acid and chondroitin sulfate). It also contains some fibroblasts and macrophages. It is derived from Extra Embryonic Mesoderm[WP]" [Wikipedia:Wharton's_jelly] | ||
| Xrefs: |
| ||
| Synonyms: |
"umbilical cord mesenchyme" EXACT [OBOL:automatic] "Wharton's jelly" EXACT [EMAPA:26127] | ||
| Comments: | todo - check |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003104(mesenchyme),UBERON:0004120(mesoderm-derived structure),UBERON:0005292(extraembryonic tissue) |
|---|---|
| part_of: | UBERON:0002331(umbilical cord) |
Children
| part of: | CL:0002569 (mesenchymal stem cell of umbilical cord) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11214-116A8 (Mesenchymal stem cells - umbilical, donor0)
- 11539-120A9 (Mesenchymal Stem Cells - umbilical, donor1)
- 11548-120B9 (Mesenchymal Stem Cells - Wharton's Jelly, donor1)
- 11549-120C1 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1)
- 11619-122A8 (Mesenchymal Stem Cells - umbilical, donor2)
- 11628-122B8
- 11629-122B9 (Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor2)
- 11700-123A8 (Mesenchymal Stem Cells - umbilical, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003422 (mesenchyme of umbilical cord), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 9.96e-60 | FFCP PHASE2:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0 | p@chr3:162256416..162256425, - |
| 9.96e-60 | FFCP PHASE1:Hg19::chr3:162256416..162256425,-#_e663e64a57f65fa3c77a29d80b43a9a0 | p@chr3:162256416..162256425, - |
| 5.62e-43 | FFCP PHASE1:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5 | p29@MME |
| 5.62e-43 | FFCP PHASE2:Hg19::chr3:154801312..154801336,+#_285858cc6f2faf2f1dda5a5b174791c5 | p29@MME |
| 4.27e-34 | FFCP PHASE2:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882 | p@chr6:11354777..11354778, + |
| 4.27e-34 | FFCP PHASE1:Hg19::chr6:11354777..11354778,+#_80dba58e815beb93a2dede49ae920882 | p@chr6:11354777..11354778, + |
| 1.67e-25 | FFCP PHASE2:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117 | p@chr17:47039342..47039353, - |
| 1.67e-25 | FFCP PHASE1:Hg19::chr17:47039342..47039353,-#_e2f9a4649c882471ba8e415905808117 | p@chr17:47039342..47039353, - |
| 6.78e-23 | FFCP PHASE2:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977 | p@chr15:68805200..68805208, + |
| 6.78e-23 | FFCP PHASE1:Hg19::chr15:68805200..68805208,+#_f6199cd47998592f29f19121f72df977 | p@chr15:68805200..68805208, + |
| 7.58e-23 | FFCP PHASE2:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1 | p@chr13:110840203..110840210, - |
| 7.58e-23 | FFCP PHASE1:Hg19::chr13:110840203..110840210,-#_7b1c7d47fd4e1fcc18dbcc6cad47fda1 | p@chr13:110840203..110840210, - |
| 7.72e-22 | FFCP PHASE1:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49c | p12@CSGALNACT1 |
| 7.72e-22 | FFCP PHASE2:Hg19::chr8:19615538..19615541,-#_f7aa3e8e5536ea7f44fb14beb6e9c49c | p12@CSGALNACT1 |
| 2.4e-20 | FFCP PHASE2:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242 | p@chr4:174429652..174429665, + |
| 2.4e-20 | FFCP PHASE1:Hg19::chr4:174429652..174429665,+#_fc40cb41aca5bea59ce79868adfd1242 | p@chr4:174429652..174429665, + |
| 5.89e-20 | FFCP PHASE1:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3 | p@chr3:162156271..162156273, - |
| 5.89e-20 | FFCP PHASE2:Hg19::chr3:162156271..162156273,-#_8640051a9137aa8747d2e806dc4e38e3 | p@chr3:162156271..162156273, - |
| 7.13e-20 | FFCP PHASE1:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05 | p@chr4:174427862..174427899, + |
| 7.13e-20 | FFCP PHASE2:Hg19::chr4:174427862..174427899,+#_de2a6863ae3dbc9b4984d709dfec9f05 | p@chr4:174427862..174427899, + |
| 1.95e-18 | FFCP PHASE2:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20 | p2@SLC35D3 |
| 1.95e-18 | FFCP PHASE1:Hg19::chr6:137243433..137243444,+#_9d0799180c363d4fe1e5c3960ca94d20 | p2@SLC35D3 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298 | p6@C9orf78 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298 | p@chr5:131543465..131543475, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298 | p4@CHRNA6 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298 | p@chr14:101159742..101159785, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr8:42623701..42623709,-#_6b6250954f4aa99ef0654192bf241298 | p4@CHRNA6 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298 | p@chr7:101461145..101461152, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298 | p33@SMTN |
| 9.07e-18 | FFCP PHASE1:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298 | p6@COMMD10 |
| 9.07e-18 | FFCP PHASE1:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298 | p@chr19:18543312..18543351, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298 | p@chr12:56912838..56912839, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298 | p@chr3:194215033..194215040, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr7:101461145..101461152,+#_6b6250954f4aa99ef0654192bf241298 | p@chr7:101461145..101461152, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr14:101159742..101159785,+#_6b6250954f4aa99ef0654192bf241298 | p@chr14:101159742..101159785, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr22:31495739..31495756,+#_6b6250954f4aa99ef0654192bf241298 | p33@SMTN |
| 9.07e-18 | FFCP PHASE2:Hg19::chr19:18543312..18543351,+#_6b6250954f4aa99ef0654192bf241298 | p@chr19:18543312..18543351, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr12:56912838..56912839,+#_6b6250954f4aa99ef0654192bf241298 | p@chr12:56912838..56912839, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298 | p@chr18:43690139..43690142, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr5:115626749..115626788,+#_6b6250954f4aa99ef0654192bf241298 | p6@COMMD10 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr3:194215033..194215040,-#_6b6250954f4aa99ef0654192bf241298 | p@chr3:194215033..194215040, - |
| 9.07e-18 | FFCP PHASE2:Hg19::chr18:43690139..43690142,+#_6b6250954f4aa99ef0654192bf241298 | p@chr18:43690139..43690142, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr5:131543465..131543475,-#_6b6250954f4aa99ef0654192bf241298 | p@chr5:131543465..131543475, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298 | p@chrX:11502822..11502831, - |
| 9.07e-18 | FFCP PHASE1:Hg19::chr9:132596981..132596990,-#_6b6250954f4aa99ef0654192bf241298 | p6@C9orf78 |
| 9.07e-18 | FFCP PHASE2:Hg19::chrX:11502822..11502831,-#_6b6250954f4aa99ef0654192bf241298 | p@chrX:11502822..11502831, - |
| 1.57e-17 | FFCP PHASE1:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791 | p@chr8:37003588..37003608, - |
| 1.57e-17 | FFCP PHASE2:Hg19::chr8:37003588..37003608,-#_e62826f860c785be112c58060d5da791 | p@chr8:37003588..37003608, - |
| 3.38e-16 | FFCP PHASE1:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41ca | p@chr1:229041596..229041602, - |
| 3.38e-16 | FFCP PHASE2:Hg19::chr1:229041596..229041602,-#_1012faf3f949bc0cb61dc855d72f41ca | p@chr1:229041596..229041602, - |
| 1.07e-15 | FFCP PHASE1:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dc | p9@FDFT1 |
| 1.07e-15 | FFCP PHASE2:Hg19::chr8:11653468..11653496,+#_045bd948676f61bca48c1f62958d18dc | p9@FDFT1 |
| 1.13e-15 | FFCP PHASE2:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4 | p@chr6:25004775..25004790, - |
| 1.13e-15 | FFCP PHASE1:Hg19::chr6:25004775..25004790,-#_2fbf07d2bc6492475c32fb9356e413d4 | p@chr6:25004775..25004790, - |
| 1.22e-15 | FFCP PHASE1:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5baf | p4@ENST00000443508 |
| 1.22e-15 | FFCP PHASE2:Hg19::chr17:20824400..20824414,+#_70b847f26a7d58876fd930ed7bbc5baf | p4@ENST00000443508 |
| 1.63e-15 | FFCP PHASE2:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680 | p@chr5:172901990..172901996, + |
| 1.63e-15 | FFCP PHASE1:Hg19::chr5:172901990..172901996,+#_3097115b51d1a86bb3ca4b9e9307e680 | p@chr5:172901990..172901996, + |
| 1.08e-14 | FFCP PHASE1:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502bab | p@chr17:38698622..38698655, - |
| 1.08e-14 | FFCP PHASE2:Hg19::chr17:38698622..38698655,-#_ce6c86e59bb53cdde4418c9434502bab | p@chr17:38698622..38698655, - |
| 1.19e-14 | FFCP PHASE1:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9c | p@chr2:45233119..45233139, - |
| 1.19e-14 | FFCP PHASE2:Hg19::chr2:45233119..45233139,-#_aaabc06f12a07f50590e5a27083c9a9c | p@chr2:45233119..45233139, - |
| 1.19e-14 | FFCP PHASE2:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9c | p@chr7:94060437..94060448, + |
| 1.19e-14 | FFCP PHASE1:Hg19::chr7:94060437..94060448,+#_aaabc06f12a07f50590e5a27083c9a9c | p@chr7:94060437..94060448, + |
| 2.89e-14 | FFCP PHASE2:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676 | p6@LRRC32 |
| 2.89e-14 | FFCP PHASE1:Hg19::chr11:76381029..76381041,-#_2d7f7ecd14b1f3c118d985197e79b676 | p6@LRRC32 |
| 3.04e-14 | FFCP PHASE1:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77a | p@chr18:73967189..73967200, - |
| 3.04e-14 | FFCP PHASE2:Hg19::chr18:73967189..73967200,-#_1c5d9abe1e4eb603c01338515169e77a | p@chr18:73967189..73967200, - |
| 3.25e-14 | FFCP PHASE2:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefd | p@chr4:8296194..8296199, + |
| 3.25e-14 | FFCP PHASE1:Hg19::chr4:8296194..8296199,+#_80e53be30c72c7d92a2a0cb2b8cfcefd | p@chr4:8296194..8296199, + |
| 1.66e-13 | FFCP PHASE1:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4 | p23@CYB5R3 |
| 1.66e-13 | FFCP PHASE2:Hg19::chr22:43042955..43042964,-#_2006c0bbf51da8f3406fb038423c68b4 | p23@CYB5R3 |
| 1.9e-13 | FFCP PHASE1:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7 | p1@ENST00000513690 |
| 1.9e-13 | FFCP PHASE2:Hg19::chr4:111536708..111536738,-#_37da1022b88d64411ab686f1374310a7 | p1@ENST00000513690 |
| 3.14e-13 | FFCP PHASE2:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0ce | p@chr4:1160761..1160774, - |
| 3.14e-13 | FFCP PHASE1:Hg19::chr4:1160761..1160774,-#_2d27d21dd9d2489a1916ce4a04e1f0ce | p@chr4:1160761..1160774, - |
| 3.49e-13 | FFCP PHASE1:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ff | p@chr1:246023985..246024006, - |
| 3.49e-13 | FFCP PHASE2:Hg19::chr1:246023985..246024006,-#_bcf47c9c6f9170c59a1c4cb3edf373ff | p@chr1:246023985..246024006, - |
| 3.61e-13 | FFCP PHASE2:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4 | p10@CREB3L1 |
| 3.61e-13 | FFCP PHASE1:Hg19::chr11:46316699..46316719,+#_828656d76679a2cbb9ceab6f8d1c16b4 | p10@CREB3L1 |
| 4.81e-13 | FFCP PHASE2:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173 | p@chr5:59792105..59792117, - |
| 4.81e-13 | FFCP PHASE1:Hg19::chr5:59792105..59792117,-#_cab7b93283b7b89e666a996de449e173 | p@chr5:59792105..59792117, - |
| 5.76e-13 | FFCP PHASE2:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415c | p20@RIMS1 |
| 5.76e-13 | FFCP PHASE1:Hg19::chr6:72970377..72970387,+#_d4b860de2fd6e01813d6d556bbc8415c | p20@RIMS1 |
| 8.38e-13 | FFCP PHASE2:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2 | p5@PITX2 |
| 8.38e-13 | FFCP PHASE1:Hg19::chr4:111558118..111558133,-#_f8fa04406213aec2722e5dac22528ff2 | p5@PITX2 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr4:120446538..120446544, - |
| 2.19e-12 | FFCP PHASE1:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p1@H2AFZP1 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr3:123522645..123522646, - |
| 2.19e-12 | FFCP PHASE2:Hg19::chr21:45467027..45467028,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p1@H2AFZP1 |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p2@ENST00000467484 |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p20@ARSJ |
| 2.19e-12 | FFCP PHASE2:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr7:95979117..95979120, + |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:26862218..26862221,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p2@ENST00000467484 |
| 2.19e-12 | FFCP PHASE2:Hg19::chr4:114901128..114901136,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p20@ARSJ |
| 2.19e-12 | FFCP PHASE1:Hg19::chr7:95979117..95979120,+#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr7:95979117..95979120, + |
| 2.19e-12 | FFCP PHASE1:Hg19::chr4:120446538..120446544,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr4:120446538..120446544, - |
| 2.19e-12 | FFCP PHASE1:Hg19::chr3:123522645..123522646,-#_b9aa3aeb960b6ef6fe617bf204837a9e | p@chr3:123522645..123522646, - |
| 2.45e-12 | FFCP PHASE2:Hg19::chr7:101461135..101461143,+#_f318eb22baad8eb4aa141aeb58f69424 | p@chr7:101461135..101461143, + |
| 2.45e-12 | FFCP PHASE1:Hg19::chr7:101461135..101461143,+#_f318eb22baad8eb4aa141aeb58f69424 | p@chr7:101461135..101461143, + |
