UBERON:0002037: Difference between revisions
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|located_in= | |located_in= | ||
|name=cerebellum | |name=cerebellum | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0001895;;UBERON:0002028 | |part_of=UBERON:0001895;;UBERON:0002028 | ||
Latest revision as of 17:24, 12 September 2014
| Name: | cerebellum | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Part of the metencephalon that lies in the posterior cranial fossa behind the brain stem. It is concerned with the coordination of movement[MESH]. A large dorsally projecting part of the brain concerned especially with the coordination of muscles and the maintenance of bodily equilibrium, situated between the brain stem and the back of the cerebrum , and formed in humans of two lateral lobes and a median lobe[BTO]. Brain structure derived from the anterior hindbrain, and perhaps including posterior midbrain. The cerebellum plays a role in somatic motor function, the control of muscle tone, and balance[ZFA]." [BTO:0000232, https://sourceforge.net/tracker/index.php?func | ||
| Xrefs: |
| ||
| Synonyms: | "epencephalon-1" EXACT [] | ||
| Comments: | note that almost all AOs agree that the cerebellum is part of the hindbrain (sometimes specifically part of the metencephalon, which, when present, is part of the hindbrain). However, ABA has cerebellum and brain stem as partof siblings, with the hindbrain part of the brainstem | ||
| Alt_id: | UBERON:FMA_67944-FMA_78469-MA_0000196-MA_0000198-MIAA_0000110-XAO_0003098-XAO_0003099-ZFA_0000100-ZFA_0000110 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Cerebellum_NIH.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002680(regional part of metencephalon) |
|---|---|
| develops_from: | UBERON:0006215(rhombic lip) |
| part_of: | UBERON:0001895(metencephalon),UBERON:0002028(hindbrain) |
Children
| is a: | FF:0010166 (cerebellum - adult donor),FF:10357-105E6 (cerebellum, newborn, donor10223) |
|---|---|
| derives from: | FF:0010083 (human cerebellum - adult sample),FF:0011182 (mouse cerebellum- embryo E11 sample),FF:0011183 (mouse cerebellum- embryo E12 sample),FF:0011184 (mouse cerebellum- embryo E13 sample),FF:0011185 (mouse cerebellum- embryo E14 sample),FF:0011186 (mouse cerebellum- embryo E15 sample),FF:0011187 (mouse cerebellum- embryo E16 sample),FF:0011188 (mouse cerebellum- embryo E17 sample),FF:0011189 (mouse cerebellum- embryo E18 sample),FF:0011190 (mouse cerebellum- neonate N00 sample),FF:0011191 (mouse cerebellum- neonate N03 sample),FF:0011192 (mouse cerebellum- neonate N06 sample),FF:0011193 (mouse cerebellum- neonate N09 sample),FF:0011250 (mouse cerebellum- neonate N30 sample),FF:0011276 (mouse cerebellum - adult sample) |
| part of: | FF:0000196 (mouse astrocyte of cerebellum sample),CL:0001031 (cerebellar granule cell),CL:0002603 (astrocyte of the cerebellum),CL:1001611 (cerebellar neuron) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
- 10122-102F5 (cerebellum)
... further results Mouse (Mus musculus)
- 10083-102B2 (cerebellum, adult, pool1)
- 10114-102E6 (cerebellum)
- 10115-102E7 (cerebellum)
- 10116-102E8 (cerebellum)
- 10117-102E9 (cerebellum)
- 10118-102F1 (cerebellum)
- 10119-102F2 (cerebellum)
- 10120-102F3 (cerebellum)
- 10121-102F4 (cerebellum)
- 10122-102F5 (cerebellum)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002037 (cerebellum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.83e-98 | FFCP PHASE2:Hg19::chr17:72673744..72673754,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr17:72673744..72673754, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:14025135..14025147,-#_aff29aac9db5e49c42391e86e26372f2 | p42@ETV1 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:22108366..22108373,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:22108366..22108373, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:202634440..202634472,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr2:202634440..202634472, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:79746650..79746659,+#_aff29aac9db5e49c42391e86e26372f2 | p23@NRXN3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161113132..161113181,+#_aff29aac9db5e49c42391e86e26372f2 | p9@GABRA6 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr18:8783620..8783627,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr18:8783620..8783627, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:106499338..106499354,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr1:106499338..106499354, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:3656599..3656608,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:3656599..3656608, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:77582887..77582896,+#_aff29aac9db5e49c42391e86e26372f2 | p12@TMEM63C |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:93225020..93225031,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr4:93225020..93225031, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr19:17992758..17992791,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr19:17992758..17992791, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:8783620..8783627,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr18:8783620..8783627, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:128520567..128520578,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr7:128520567..128520578, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr21:47314143..47314154,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr21:47314143..47314154, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr15:81489344..81489353,+#_aff29aac9db5e49c42391e86e26372f2 | p31@IL16 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr13:100633107..100633110,+#_aff29aac9db5e49c42391e86e26372f2 | p7@AK298232 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:65999312..65999320,+#_aff29aac9db5e49c42391e86e26372f2 | p30@PACS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:51137783..51137794,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr22:51137783..51137794, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr19:3056479..3056494,-#_aff29aac9db5e49c42391e86e26372f2 | p27@AES |
| 1.83e-98 | FFCP PHASE2:Hg19::chr18:39687774..39687782,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr18:39687774..39687782, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr21:32624517..32624531,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr21:32624517..32624531, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45061929..45061936,+#_aff29aac9db5e49c42391e86e26372f2 | p8@AK054905 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:72922664..72922672,+#_aff29aac9db5e49c42391e86e26372f2 | p31@RIMS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:79746650..79746659,+#_aff29aac9db5e49c42391e86e26372f2 | p23@NRXN3 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:228602576..228602587,-#_aff29aac9db5e49c42391e86e26372f2 | p1@CU689740 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:72673744..72673754,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr17:72673744..72673754, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:64146203..64146207,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr11:64146203..64146207, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:166678786..166678822,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr4:166678786..166678822, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:588406..588409,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr17:588406..588409, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:39892073..39892078,+#_aff29aac9db5e49c42391e86e26372f2 | p25@TMEM178 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr15:81489344..81489353,+#_aff29aac9db5e49c42391e86e26372f2 | p31@IL16 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr13:100633107..100633110,+#_aff29aac9db5e49c42391e86e26372f2 | p7@AK298232 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:24526024..24526028,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr1:24526024..24526028, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:122733093..122733100,+#_aff29aac9db5e49c42391e86e26372f2 | p8@CRTAM |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:149835072..149835078,+#_aff29aac9db5e49c42391e86e26372f2 | p39@KIF5C |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:22108366..22108373,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:22108366..22108373, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:22062741..22062742,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:22062741..22062742, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:104480062..104480069,-#_aff29aac9db5e49c42391e86e26372f2 | p3@ENST00000538641 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:202634440..202634472,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr2:202634440..202634472, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:72922572..72922582,+#_aff29aac9db5e49c42391e86e26372f2 | p30@RIMS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr5:161113132..161113181,+#_aff29aac9db5e49c42391e86e26372f2 | p9@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chrX:71131166..71131173,+#_aff29aac9db5e49c42391e86e26372f2 | p@chrX:71131166..71131173, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112767..161112774,+#_aff29aac9db5e49c42391e86e26372f2 | p5@GABRA6 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr4:93225020..93225031,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr4:93225020..93225031, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:99995188..99995194,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr7:99995188..99995194, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:34041419..34041429,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr6:34041419..34041429, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:1277107..1277145,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr7:1277107..1277145, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr14:60048980..60048989,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr14:60048980..60048989, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:3656616..3656628,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:3656616..3656628, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:155302128..155302137,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr7:155302128..155302137, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr22:32022290..32022297,-#_aff29aac9db5e49c42391e86e26372f2 | p30@PISD |
| 1.83e-98 | FFCP PHASE2:Hg19::chr21:32624517..32624531,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr21:32624517..32624531, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chrX:105192423..105192431,+#_aff29aac9db5e49c42391e86e26372f2 | p8@NRK |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:48545700..48545707,+#_aff29aac9db5e49c42391e86e26372f2 | p5@ACSF2 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:58496260..58496271,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:58496260..58496271, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr7:44308399..44308433,-#_aff29aac9db5e49c42391e86e26372f2 | p17@CAMK2B |
| 1.83e-98 | FFCP PHASE1:Hg19::chr6:72922559..72922568,+#_aff29aac9db5e49c42391e86e26372f2 | p28@RIMS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr21:47314143..47314154,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr21:47314143..47314154, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr13:113624941..113624962,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr13:113624941..113624962, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:29162047..29162055,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr7:29162047..29162055, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr17:72673771..72673779,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr17:72673771..72673779, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:608967..608994,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:608967..608994, + |
| 1.83e-98 | FFCP PHASE2:Hg19::chr2:39892073..39892078,+#_aff29aac9db5e49c42391e86e26372f2 | p25@TMEM178 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:22108417..22108426,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:22108417..22108426, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr16:49357829..49357832,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:49357829..49357832, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:52171354..52171361,+#_aff29aac9db5e49c42391e86e26372f2 | p43@FRMD6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr12:72667119..72667130,+#_aff29aac9db5e49c42391e86e26372f2 | p16@TRHDE |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161113284..161113295,+#_aff29aac9db5e49c42391e86e26372f2 | p7@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:133821982..133821993,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr11:133821982..133821993, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr8:17579288..17579296,-#_aff29aac9db5e49c42391e86e26372f2 | p69@MTUS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:3656616..3656628,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:3656616..3656628, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:93225050..93225057,+#_aff29aac9db5e49c42391e86e26372f2 | p11@GRID2 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr4:166678786..166678822,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr4:166678786..166678822, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr3:22062741..22062742,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:22062741..22062742, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr18:39687774..39687782,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr18:39687774..39687782, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:65999337..65999347,+#_aff29aac9db5e49c42391e86e26372f2 | p26@PACS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr5:161112767..161112774,+#_aff29aac9db5e49c42391e86e26372f2 | p5@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:147141170..147141181,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr3:147141170..147141181, - |
| 1.83e-98 | FFCP PHASE2:Hg19::chr19:6501203..6501206,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr19:6501203..6501206, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr5:161112675..161112678,+#_aff29aac9db5e49c42391e86e26372f2 | p10@GABRA6 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr2:39894333..39894353,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr2:39894333..39894353, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr1:59775744..59775751,+#_aff29aac9db5e49c42391e86e26372f2 | p24@FGGY |
| 1.83e-98 | FFCP PHASE2:Hg19::chr6:34041419..34041429,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr6:34041419..34041429, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:89680444..89680453,-#_aff29aac9db5e49c42391e86e26372f2 | p31@FAM13A |
| 1.83e-98 | FFCP PHASE1:Hg19::chr20:45062007..45062020,+#_aff29aac9db5e49c42391e86e26372f2 | p7@AK054905 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr7:29237354..29237369,+#_aff29aac9db5e49c42391e86e26372f2 | p32@CHN2 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr12:72667119..72667130,+#_aff29aac9db5e49c42391e86e26372f2 | p16@TRHDE |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:123396575..123396583,+#_aff29aac9db5e49c42391e86e26372f2 | p9@GRAMD1B |
| 1.83e-98 | FFCP PHASE2:Hg19::chr16:87376991..87377002,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr16:87376991..87377002, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr14:24898471..24898476,-#_aff29aac9db5e49c42391e86e26372f2 | p13@CBLN3 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr17:72673771..72673779,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr17:72673771..72673779, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr4:2257102..2257110,-#_aff29aac9db5e49c42391e86e26372f2 | p6@MXD4 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr3:147114396..147114403,-#_aff29aac9db5e49c42391e86e26372f2 | p23@ZIC4 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr11:108438755..108438763,-#_aff29aac9db5e49c42391e86e26372f2 | p20@EXPH5 |
| 1.83e-98 | FFCP PHASE1:Hg19::chr11:64146900..64146905,+#_aff29aac9db5e49c42391e86e26372f2 | p@chr11:64146900..64146905, + |
| 1.83e-98 | FFCP PHASE1:Hg19::chr8:17579288..17579296,-#_aff29aac9db5e49c42391e86e26372f2 | p69@MTUS1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr1:1953233..1953242,-#_aff29aac9db5e49c42391e86e26372f2 | p@chr1:1953233..1953242, - |
| 1.83e-98 | FFCP PHASE1:Hg19::chr12:113682304..113682315,+#_aff29aac9db5e49c42391e86e26372f2 | p17@TPCN1 |
| 1.83e-98 | FFCP PHASE2:Hg19::chr20:45061929..45061936,+#_aff29aac9db5e49c42391e86e26372f2 | p8@AK054905 |
Property "Property value" (as page type) with input value "UBPROP:0000001 "Dorsal part of the hindbrain that coordinates muscle movement, posture, and balance.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Specialized brain region derived from the dorsal metencephalon (anterior hindbrain, and perhaps including posterior midbrain) and becoming distinctive late in the segmentation period. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
