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|located_in=
|located_in=
|name=internal ear
|name=internal ear
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0001690
|part_of=UBERON:0001690

Latest revision as of 17:21, 12 September 2014

Name:internal ear
Namespace:FANTOM
Definition:"Complex labyrinthine structure that comprises sensory endorgans specialized for vestibular, auditory, and acoustico-vestibular sensation." [PMID:16217737, Wikipedia:Internal_ear, ZFIN:curator]
Xrefs:
links:

AAO:0000238
BTO:0000630
EFO:0001363
EHDAA2:0000831
EHDAA:504
EMAPA:16194
EV:0100361
FMA:60909
GAID:871
galen:InnerEar
[ 200px-Gray923.png 200px-Gray923.png]
MA:0000237
MAT:0000145
MESH:A.09.246.631
MIAA:0000145
ncithesaurus:Internal_Ear
NIF_GrossAnatomy:birnlex_1196
OpenCyc:Mx4rwJ8SsJwpEbGdrcN5Y29ycA
SCTID:181189006
TAO:0000217
VHOG:0000284
XAO:0000192

ZFA:0000217
Synonyms: "auris interna" RELATED [BTO:0000630]
"inner ear" EXACT []
"labyrinth" RELATED []
"otocyst" RELATED []
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_60909-MA_0000237-MIAA_0000145-XAO_0000192-ZFA_0000217
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000477(anatomical cluster),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest)
develops_from:UBERON:0003051(ear vesicle)
part_of:UBERON:0001690(ear)



Children

derives from:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample)
part of:FF:0000256 (Inner ear stem cell (1st generation stem cell) sample),FF:0000257 (Inner ear stem cells (4th generation stem cells) sample),FF:0000258 (Inner ear stem cell (10 days differentiation) sample),FF:0000259 (Inner ear stem cell (3 days differentiation) sample),UBERON:0001839 (bony labyrinth),UBERON:0001849 (membranous labyrinth),UBERON:0004637 (otic capsule),UBERON:0010113 (future membranous labyrinth),UBERON:0010349 (otic capsule pre-cartilage condensation),UBERON:0010351 (otic capsule cartilage condensation)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001846 (internal ear), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_290235bc8c76f63330a2b730572b2dadp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_290235bc8c76f63330a2b730572b2dadp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr11:4689837..4689845,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_290235bc8c76f63330a2b730572b2dadp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_290235bc8c76f63330a2b730572b2dadp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_290235bc8c76f63330a2b730572b2dadp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_290235bc8c76f63330a2b730572b2dadp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_290235bc8c76f63330a2b730572b2dadp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr5:144115382..144115389,+#_290235bc8c76f63330a2b730572b2dadp@chr5:144115382..144115389, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_290235bc8c76f63330a2b730572b2dadp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr13:58283583..58283607,-#_290235bc8c76f63330a2b730572b2dadp@chr13:58283583..58283607, -
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_290235bc8c76f63330a2b730572b2dadp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr12:13572961..13572974,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_290235bc8c76f63330a2b730572b2dadp18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr10:107349309..107349318,-#_290235bc8c76f63330a2b730572b2dadp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_290235bc8c76f63330a2b730572b2dadp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_290235bc8c76f63330a2b730572b2dadp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr7:139597684..139597691,+#_290235bc8c76f63330a2b730572b2dadp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:14685072..14685084,+#_290235bc8c76f63330a2b730572b2dadp41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_290235bc8c76f63330a2b730572b2dadp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_290235bc8c76f63330a2b730572b2dadp@chr18:38104702..38104718, -
1.87e-86FFCP PHASE2:Mm9::chr17:27252925..27252939,+#_290235bc8c76f63330a2b730572b2dadp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_290235bc8c76f63330a2b730572b2dadp@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_290235bc8c76f63330a2b730572b2dadp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr7:27964761..27964768,+#_290235bc8c76f63330a2b730572b2dadp@chr7:27964761..27964768, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_290235bc8c76f63330a2b730572b2dadp2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr11:94371127..94371139,-#_290235bc8c76f63330a2b730572b2dadp@chr11:94371127..94371139, -
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_290235bc8c76f63330a2b730572b2dadp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_290235bc8c76f63330a2b730572b2dadp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215319..89215330,+#_290235bc8c76f63330a2b730572b2dadp@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr7:109052297..109052300,-#_290235bc8c76f63330a2b730572b2dadp2@Tomt
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_290235bc8c76f63330a2b730572b2dadp2@Otof
1.87e-86FFCP PHASE2:Mm9::chr13:37195838..37195870,-#_290235bc8c76f63330a2b730572b2dadp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr15:103146966..103146971,-#_290235bc8c76f63330a2b730572b2dadp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr6:29428397..29428407,-#_290235bc8c76f63330a2b730572b2dadp@chr6:29428397..29428407, -
1.87e-86FFCP PHASE2:Mm9::chr4:115556939..115556945,+#_290235bc8c76f63330a2b730572b2dadp4@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_290235bc8c76f63330a2b730572b2dadp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_290235bc8c76f63330a2b730572b2dadp1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr1:94627290..94627299,-#_290235bc8c76f63330a2b730572b2dadp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr12:109905468..109905474,+#_290235bc8c76f63330a2b730572b2dadp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971367..93971379,-#_290235bc8c76f63330a2b730572b2dadp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_290235bc8c76f63330a2b730572b2dadp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr10:107156949..107156956,-#_290235bc8c76f63330a2b730572b2dadp3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr2:121206695..121206711,-#_290235bc8c76f63330a2b730572b2dadp1@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_290235bc8c76f63330a2b730572b2dadp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251606..113251613,+#_290235bc8c76f63330a2b730572b2dadp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr2:170417150..170417155,-#_290235bc8c76f63330a2b730572b2dadp@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_290235bc8c76f63330a2b730572b2dadp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr18:66033526..66033539,-#_290235bc8c76f63330a2b730572b2dadp@chr18:66033526..66033539, -
1.87e-86FFCP PHASE2:Mm9::chr14:31283085..31283097,-#_290235bc8c76f63330a2b730572b2dadp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr7:29733825..29733837,-#_290235bc8c76f63330a2b730572b2dadp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE2:Mm9::chr3:69811590..69811601,+#_290235bc8c76f63330a2b730572b2dadp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:22767090..22767099,+#_290235bc8c76f63330a2b730572b2dadp18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr18:81314626..81314636,+#_290235bc8c76f63330a2b730572b2dadp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr2:75320183..75320189,+#_290235bc8c76f63330a2b730572b2dadp@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_290235bc8c76f63330a2b730572b2dadp@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508015..13508019,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr16:45693840..45693856,-#_290235bc8c76f63330a2b730572b2dadp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_290235bc8c76f63330a2b730572b2dadp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_290235bc8c76f63330a2b730572b2dadp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr3:154459231..154459240,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011956..67011967,+#_290235bc8c76f63330a2b730572b2dadp1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207998..42208009,-#_290235bc8c76f63330a2b730572b2dadp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_290235bc8c76f63330a2b730572b2dadp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_290235bc8c76f63330a2b730572b2dadp1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr16:96494788..96494801,+#_290235bc8c76f63330a2b730572b2dadp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr11:114603036..114603048,+#_290235bc8c76f63330a2b730572b2dadp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_290235bc8c76f63330a2b730572b2dadp6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_290235bc8c76f63330a2b730572b2dadp@chr1:94627290..94627299, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_290235bc8c76f63330a2b730572b2dadp@chr11:4689837..4689845, -
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_290235bc8c76f63330a2b730572b2dadp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_290235bc8c76f63330a2b730572b2dadp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207397..42207408,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_290235bc8c76f63330a2b730572b2dadp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_290235bc8c76f63330a2b730572b2dadp3@Strc
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_290235bc8c76f63330a2b730572b2dadp2@Plscr5
1.87e-86FFCP PHASE2:Mm9::chrX:154140781..154140788,+#_290235bc8c76f63330a2b730572b2dadp@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_290235bc8c76f63330a2b730572b2dadp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349392..107349413,-#_290235bc8c76f63330a2b730572b2dadp2@Otogl
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_290235bc8c76f63330a2b730572b2dadp12@B3galt5
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_290235bc8c76f63330a2b730572b2dadp@chr9:42207397..42207408, -
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_290235bc8c76f63330a2b730572b2dadp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr9:41495920..41495928,-#_290235bc8c76f63330a2b730572b2dadp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr4:133802857..133802884,+#_290235bc8c76f63330a2b730572b2dadp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_290235bc8c76f63330a2b730572b2dadp@chr3:154459246..154459253, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_290235bc8c76f63330a2b730572b2dadp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_290235bc8c76f63330a2b730572b2dadp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528388..182528403,+#_290235bc8c76f63330a2b730572b2dadp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_290235bc8c76f63330a2b730572b2dadp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_290235bc8c76f63330a2b730572b2dadp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_290235bc8c76f63330a2b730572b2dadp@chr6:29428397..29428407, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The auditory (hearing) and vestibular (balance) organ of the fish, equivalent to the inner ear of amniotes. (See Anatomical Atlas entry for ear by T. Whitfield.)[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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