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|located_in=
|located_in=
|name=female gonad
|name=female gonad
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0000474
|part_of=UBERON:0000474

Latest revision as of 17:13, 12 September 2014

Name:female gonad
Namespace:FANTOM
Definition:"Ovum-producing female reproductive organ." [Wikipedia:Ovary]
Xrefs:
links:

AAO:0000371
BILA:0000125
BTO:0000975
EHDAA2:0001360
EHDAA:8124
EMAPA:17962
EV:0100111
FBbt:00004865
FMA:7209
GAID:367
[ Gray589.png Gray589.png]
[ 200px-Female_anatomy.png 200px-Female_anatomy.png]
MA:0000384
MESH:A.05.360.319.114.630
MIAA:0000125
ncithesaurus:Ovary
OpenCyc:Mx4rvVi9QJwpEbGdrcN5Y29ycA
SCTID:181464007
TAO:0000403
VHOG:0000251
XAO:0000258

ZFA:0000403
Synonyms: "female organism genitalia gonad" EXACT [OBOL:automatic]
"female organism genitalia gonada" EXACT [OBOL:automatic]
"female organism reproductive system gonad" EXACT [OBOL:automatic]
"female organism reproductive system gonada" EXACT [OBOL:automatic]
"female reproductive system gonad" EXACT [OBOL:automatic]
"female reproductive system gonada" EXACT [OBOL:automatic]
"genitalia of female organism gonad" EXACT [OBOL:automatic]
"genitalia of female organism gonada" EXACT [OBOL:automatic]
"gonad of female organism genitalia" EXACT [OBOL:automatic]
"gonad of female organism reproductive system" EXACT [OBOL:automatic]
"gonad of female reproductive system" EXACT [OBOL:automatic]
"gonad of genitalia of female organism" EXACT [OBOL:automatic]
"gonad of reproductive system of female organism" EXACT [OBOL:automatic]
"gonada of female organism genitalia" EXACT [OBOL:automatic]
"gonada of female organism reproductive system" EXACT [OBOL:automatic]
"gonada of female reproductive system" EXACT [OBOL:automatic]
"gonada of genitalia of female organism" EXACT [OBOL:automatic]
"gonada of reproductive system of female organism" EXACT [OBOL:automatic]
"ovaries" RELATED PLURAL []
"ovarium" RELATED LATIN [Wikipedia:Ovary]
"ovary" EXACT []
"ovum-producing ovary" EXACT SENSU [GO:0061039]
"reproductive system of female organism gonad" EXACT [OBOL:automatic]
"reproductive system of female organism gonada" EXACT [OBOL:automatic]
Comments:Ovaries of some kind are found in the female reproductive system of many animals that employ sexual reproduction, including invertebrates. However, they develop in a very different way in most invertebrates than they do in vertebrates, and are not truly homologous. Many of the features found in human ovaries are common to all vertebrates, including the presence of follicular cells, tunica albuginea, and so on. However, many species produce a far greater number of eggs during their lifetime than do humans, so that, in fish and amphibians, there may be hundreds, or even millions of fertile eggs present in the ovary at any given time. In these species, fresh eggs may be developing from the germinal epithelium throughout life. Corpora lutea are found only in mammals, and in some elasmobranch fish; in other species, the remnants of the follicle are quickly resorbed by the ovary. In birds, reptiles, and monotremes, the egg is relatively large, filling the follicle, and distorting the shape of the ovary at maturity. Amphibians and reptiles have no ovarian medulla; the central part of the ovary is a hollow, lymph-filled space. The ovary of teleosts is also often hollow, but in this case, the eggs are shed into the cavity, which opens into the oviduct. Although most normal female vertebrates have two ovaries, this is not the case in all species. In birds and platypuses, the right ovary never matures, so that only the left is functional. In some elasmobranchs, the reverse is true, with only the right ovary fully developing. In the primitive jawless fish, and some teleosts, there is only one ovary, formed by the fusion of the paired organs in the embryo[WP].
Alt_id: UBERON:FBbt_00004865-FMA_7209-MA_0000384-MIAA_0000125-XAO_0000258-ZFA_0000403
Subset: organ_slim
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000991(gonad),UBERON:0003134(female reproductive organ)
disjoint_from:UBERON:0009117(indifferent gonad)
develops_from:UBERON:0009117(indifferent gonad)
part_of:UBERON:0000474(female reproductive system)



Children

is a:UBERON:0002118 (right ovary),UBERON:0002119 (left ovary)
disjoint from:UBERON:0000473 (testis)
derives from:FF:0010020 (human ovary - adult sample),FF:0011378 (mouse ovary- embryo E18 sample),FF:0011439 (mouse ovary- adult sample),FF:0011510 (mouse ovary, neonate N00 sample),FF:0100977 (ovary cell line sample)
part of:UBERON:0004911 (epithelium of female gonad)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000992 (female gonad), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE1:Mm9::chrX:140752342..140752344,+#_872170e79398cc5ab87396f8f2261eebp6@Alg13
1.58e-86FFCP PHASE2:Mm9::chrX:140752342..140752344,+#_872170e79398cc5ab87396f8f2261eebp6@Alg13
1.33e-65FFCP PHASE2:Mm9::chr10:107980160..107980166,+#_8fee6f150cff6b87d2f67a45947384a3p@chr10:107980160..107980166, +
1.33e-65FFCP PHASE1:Mm9::chr10:107980160..107980166,+#_8fee6f150cff6b87d2f67a45947384a3p@chr10:107980160..107980166, +
3.28e-58FFCP PHASE1:Mm9::chr4:155424607..155424615,-#_bb8710daa830fb47ea64023c9192f965p@chr4:155424607..155424615, -
3.28e-58FFCP PHASE2:Mm9::chr6:85967256..85967266,+#_bb8710daa830fb47ea64023c9192f965p@chr6:85967256..85967266, +
3.28e-58FFCP PHASE2:Mm9::chr4:155424607..155424615,-#_bb8710daa830fb47ea64023c9192f965p@chr4:155424607..155424615, -
3.28e-58FFCP PHASE1:Mm9::chr1:134927157..134927163,-#_bb8710daa830fb47ea64023c9192f965p2@Mdm4
3.28e-58FFCP PHASE2:Mm9::chr6:85967270..85967280,+#_bb8710daa830fb47ea64023c9192f965p@chr6:85967270..85967280, +
3.28e-58FFCP PHASE1:Mm9::chr6:95283986..95283988,-#_bb8710daa830fb47ea64023c9192f965p1@AY512915
3.28e-58FFCP PHASE1:Mm9::chr7:24170907..24170914,+#_bb8710daa830fb47ea64023c9192f965p1@Nlrp5
3.28e-58FFCP PHASE2:Mm9::chr7:114310501..114310505,+#_bb8710daa830fb47ea64023c9192f965p2@Nlrp14
3.28e-58FFCP PHASE2:Mm9::chr6:95283986..95283988,-#_bb8710daa830fb47ea64023c9192f965p1@AY512915
3.28e-58FFCP PHASE1:Mm9::chr6:85967256..85967266,+#_bb8710daa830fb47ea64023c9192f965p@chr6:85967256..85967266, +
3.28e-58FFCP PHASE2:Mm9::chr1:134927157..134927163,-#_bb8710daa830fb47ea64023c9192f965p2@Mdm4
3.28e-58FFCP PHASE1:Mm9::chr6:85967270..85967280,+#_bb8710daa830fb47ea64023c9192f965p@chr6:85967270..85967280, +
3.28e-58FFCP PHASE2:Mm9::chr7:24170907..24170914,+#_bb8710daa830fb47ea64023c9192f965p1@Nlrp5
3.28e-58FFCP PHASE1:Mm9::chr7:114310501..114310505,+#_bb8710daa830fb47ea64023c9192f965p2@Nlrp14
3.05e-53FFCP PHASE2:Hg19::chr8:38008450..38008459,-#_c69a27fd6313fee99fe1efea4685602bp4@STAR
3.05e-53FFCP PHASE1:Hg19::chr8:38008450..38008459,-#_c69a27fd6313fee99fe1efea4685602bp4@STAR
1.1e-52FFCP PHASE1:Mm9::chr7:127288800..127288806,-#_fb66226adf13eeb2f6d8cb5b60413199p1@Zp2
1.1e-52FFCP PHASE2:Mm9::chr7:127288800..127288806,-#_fb66226adf13eeb2f6d8cb5b60413199p1@Zp2
3.91e-46FFCP PHASE2:Hg19::chr5:81654563..81654582,+#_7e9d8236f562afe9954f3f493f73b97bp@chr5:81654563..81654582, +
3.91e-46FFCP PHASE1:Hg19::chr5:81654563..81654582,+#_7e9d8236f562afe9954f3f493f73b97bp@chr5:81654563..81654582, +
6.25e-43FFCP PHASE1:Hg19::chr9:127269661..127269719,-#_a9605b3653bdb35a7620ce7db4753d7ep1@NR5A1
6.25e-43FFCP PHASE2:Hg19::chr9:127269661..127269719,-#_a9605b3653bdb35a7620ce7db4753d7ep1@NR5A1
4.21e-42FFCP PHASE1:Hg19::chr5:81654586..81654599,+#_585c3f6868254d45eb131c960cc1c09dp@chr5:81654586..81654599, +
4.21e-42FFCP PHASE2:Hg19::chr5:81654586..81654599,+#_585c3f6868254d45eb131c960cc1c09dp@chr5:81654586..81654599, +
1.7e-39FFCP PHASE1:Mm9::chr6:85967211..85967223,+#_f26072fbc93fe868def662a2b331a9ebp1@Figla
1.7e-39FFCP PHASE2:Mm9::chr13:65307269..65307277,-#_f26072fbc93fe868def662a2b331a9ebp1@Nlrp4f
1.7e-39FFCP PHASE1:Mm9::chr13:65307269..65307277,-#_f26072fbc93fe868def662a2b331a9ebp1@Nlrp4f
1.7e-39FFCP PHASE2:Mm9::chr6:85967211..85967223,+#_f26072fbc93fe868def662a2b331a9ebp1@Figla
8.46e-39FFCP PHASE1:Hg19::chr6:14671928..14671958,+#_d5308cc85fc3bcbf5b2d22413ca6e852p@chr6:14671928..14671958, +
8.46e-39FFCP PHASE2:Hg19::chr6:14671928..14671958,+#_d5308cc85fc3bcbf5b2d22413ca6e852p@chr6:14671928..14671958, +
1.39e-38FFCP PHASE1:Hg19::chr9:6257179..6257191,+#_b07d2457ea37b0b592bf0bd732da1ff6p@chr9:6257179..6257191, +
1.39e-38FFCP PHASE2:Hg19::chr9:6257179..6257191,+#_b07d2457ea37b0b592bf0bd732da1ff6p@chr9:6257179..6257191, +
8.4e-38FFCP PHASE2:Hg19::chr4:38143865..38143904,-#_0f78977b5cb8b0e70715a7b084781948p@chr4:38143865..38143904, -
8.4e-38FFCP PHASE1:Hg19::chr4:38143865..38143904,-#_0f78977b5cb8b0e70715a7b084781948p@chr4:38143865..38143904, -
1.13e-37FFCP PHASE1:Hg19::chr8:38008485..38008499,-#_2723abae2bd59dff9f3bc63da6a8f774p3@STAR
1.13e-37FFCP PHASE2:Hg19::chr8:38008485..38008499,-#_2723abae2bd59dff9f3bc63da6a8f774p3@STAR
1.35e-37FFCP PHASE1:Hg19::chr3:197640161..197640186,-#_91118e8507b6e1d741d3ffaa7f0510fdp5@IQCG
1.35e-37FFCP PHASE2:Hg19::chr3:197640161..197640186,-#_91118e8507b6e1d741d3ffaa7f0510fdp5@IQCG
1.12e-34FFCP PHASE1:Hg19::chr1:9262795..9262800,-#_3aeea2a06a9029cd7062c023d3a7a72dp3@ENST00000437157
1.12e-34FFCP PHASE2:Hg19::chr1:9262795..9262800,-#_3aeea2a06a9029cd7062c023d3a7a72dp3@ENST00000437157
3.07e-34FFCP PHASE1:Hg19::chr3:197639921..197639934,-#_00d526e27789b65479f8881fbac490e4p6@IQCG
3.07e-34FFCP PHASE2:Hg19::chr3:197639921..197639934,-#_00d526e27789b65479f8881fbac490e4p6@IQCG
3.61e-33FFCP PHASE1:Mm9::chr12:106460922..106460932,-#_6c61162360fe1fc93b82ce1391db9cc6p1@Tcl1
3.61e-33FFCP PHASE2:Mm9::chr12:106460922..106460932,-#_6c61162360fe1fc93b82ce1391db9cc6p1@Tcl1
2.11e-32FFCP PHASE2:Hg19::chr16:88278862..88278869,-#_813c3746bd172c11587de1468988c7c7p@chr16:88278862..88278869, -
2.11e-32FFCP PHASE1:Hg19::chr16:88278862..88278869,-#_813c3746bd172c11587de1468988c7c7p@chr16:88278862..88278869, -
6.67e-32FFCP PHASE1:Hg19::chr3:197640146..197640157,-#_578a4e5cd7e0e3a81312566b0867ec7bp7@IQCG
6.67e-32FFCP PHASE2:Hg19::chr3:197640146..197640157,-#_578a4e5cd7e0e3a81312566b0867ec7bp7@IQCG
9.85e-31FFCP PHASE1:Hg19::chr12:41374693..41374709,+#_99f1abb76399c9ff6610b026057779a8p@chr12:41374693..41374709, +
9.85e-31FFCP PHASE2:Hg19::chr12:41374693..41374709,+#_99f1abb76399c9ff6610b026057779a8p@chr12:41374693..41374709, +
4.03e-30FFCP PHASE2:Mm9::chr10:92400752..92400763,-#_c39855ea57efee5b4d05b3abce9397a6p@chr10:92400752..92400763, -
4.03e-30FFCP PHASE1:Mm9::chr4:140298554..140298559,-#_c39855ea57efee5b4d05b3abce9397a6p1@Padi6
4.03e-30FFCP PHASE1:Mm9::chr10:92400752..92400763,-#_c39855ea57efee5b4d05b3abce9397a6p@chr10:92400752..92400763, -
4.03e-30FFCP PHASE2:Mm9::chr4:140298554..140298559,-#_c39855ea57efee5b4d05b3abce9397a6p1@Padi6
5.61e-30FFCP PHASE2:Mm9::chr19:11771539..11771547,+#_633733813a924eb281c219fba0055655p1@Gm97
5.61e-30FFCP PHASE2:Mm9::chr9:20764229..20764236,-#_633733813a924eb281c219fba0055655p7@Dnmt1
5.61e-30FFCP PHASE1:Mm9::chr6:136364088..136364093,-#_633733813a924eb281c219fba0055655p1@E330021D16Rik
5.61e-30FFCP PHASE2:Mm9::chr1:158200894..158200897,-#_633733813a924eb281c219fba0055655p@chr1:158200894..158200897, -
5.61e-30FFCP PHASE1:Mm9::chr1:93074296..93074300,+#_633733813a924eb281c219fba0055655p@chr1:93074296..93074300, +
5.61e-30FFCP PHASE2:Mm9::chr8:8457435..8457437,-#_633733813a924eb281c219fba0055655p@chr8:8457435..8457437, -
5.61e-30FFCP PHASE1:Mm9::chr11:69144939..69144953,+#_633733813a924eb281c219fba0055655p@chr11:69144939..69144953, +
5.61e-30FFCP PHASE1:Mm9::chr19:11771539..11771547,+#_633733813a924eb281c219fba0055655p1@Gm97
5.61e-30FFCP PHASE2:Mm9::chr7:91461243..91461249,+#_633733813a924eb281c219fba0055655p@chr7:91461243..91461249, +
5.61e-30FFCP PHASE2:Mm9::chr4:149057252..149057255,-#_633733813a924eb281c219fba0055655p@chr4:149057252..149057255, -
5.61e-30FFCP PHASE1:Mm9::chr10:61606665..61606672,-#_633733813a924eb281c219fba0055655p6@2010107G23Rik
5.61e-30FFCP PHASE2:Mm9::chr8:106819630..106819633,+#_633733813a924eb281c219fba0055655p@chr8:106819630..106819633, +
5.61e-30FFCP PHASE2:Mm9::chr9:50924104..50924111,+#_633733813a924eb281c219fba0055655p1@Btg4
5.61e-30FFCP PHASE1:Mm9::chr9:75195696..75195700,+#_633733813a924eb281c219fba0055655p1@Bcl2l10
5.61e-30FFCP PHASE1:Mm9::chr6:50581122..50581124,-#_633733813a924eb281c219fba0055655p@chr6:50581122..50581124, -
5.61e-30FFCP PHASE1:Mm9::chr12:16760117..16760124,-#_633733813a924eb281c219fba0055655p@chr12:16760117..16760124, -
5.61e-30FFCP PHASE2:Mm9::chr1:65090359..65090363,+#_633733813a924eb281c219fba0055655p@chr1:65090359..65090363, +
5.61e-30FFCP PHASE1:Mm9::chr1:158200952..158200959,-#_633733813a924eb281c219fba0055655p@chr1:158200952..158200959, -
5.61e-30FFCP PHASE2:Mm9::chr17:31138881..31138887,+#_633733813a924eb281c219fba0055655p@chr17:31138881..31138887, +
5.61e-30FFCP PHASE2:Mm9::chr19:10995119..10995125,-#_633733813a924eb281c219fba0055655p1@Zp1
5.61e-30FFCP PHASE2:Mm9::chr17:36084106..36084115,+#_633733813a924eb281c219fba0055655p1@Gm8801
5.61e-30FFCP PHASE1:Mm9::chr9:54041326..54041330,-#_633733813a924eb281c219fba0055655p1@Cyp19a1
5.61e-30FFCP PHASE1:Mm9::chr3:104897909..104897914,+#_633733813a924eb281c219fba0055655p@chr3:104897909..104897914, +
5.61e-30FFCP PHASE2:Mm9::chr1:95973600..95973604,+#_633733813a924eb281c219fba0055655p@chr1:95973600..95973604, +
5.61e-30FFCP PHASE2:Mm9::chr14:71052888..71052893,-#_633733813a924eb281c219fba0055655p2@Npm2
5.61e-30FFCP PHASE2:Mm9::chr16:58638504..58638523,-#_633733813a924eb281c219fba0055655p1@E330017A01Rik
5.61e-30FFCP PHASE1:Mm9::chr8:67542478..67542487,-#_633733813a924eb281c219fba0055655p1@Trim61
5.61e-30FFCP PHASE1:Mm9::chr17:86474670..86474675,-#_633733813a924eb281c219fba0055655p@chr17:86474670..86474675, -
5.61e-30FFCP PHASE2:Mm9::chr12:16760117..16760124,-#_633733813a924eb281c219fba0055655p@chr12:16760117..16760124, -
5.61e-30FFCP PHASE2:Mm9::chr10:61606665..61606672,-#_633733813a924eb281c219fba0055655p6@2010107G23Rik
5.61e-30FFCP PHASE1:Mm9::chr8:128375027..128375036,-#_633733813a924eb281c219fba0055655p@chr8:128375027..128375036, -
5.61e-30FFCP PHASE2:Mm9::chr7:54231273..54231283,-#_633733813a924eb281c219fba0055655p1@C86187
5.61e-30FFCP PHASE1:Mm9::chr2:93709258..93709260,-#_633733813a924eb281c219fba0055655p1@Accsl
5.61e-30FFCP PHASE2:Mm9::chr4:75628669..75628692,-#_633733813a924eb281c219fba0055655p@chr4:75628669..75628692, -
5.61e-30FFCP PHASE1:Mm9::chr9:110231661..110231693,+#_633733813a924eb281c219fba0055655p@chr9:110231661..110231693, +
5.61e-30FFCP PHASE2:Mm9::chr18:34568160..34568165,+#_633733813a924eb281c219fba0055655p5@Pkd2l2
5.61e-30FFCP PHASE2:Mm9::chr12:68752360..68752363,+#_633733813a924eb281c219fba0055655p@chr12:68752360..68752363, +
5.61e-30FFCP PHASE1:Mm9::chr4:75628669..75628692,-#_633733813a924eb281c219fba0055655p@chr4:75628669..75628692, -
5.61e-30FFCP PHASE1:Mm9::chr10:68711399..68711404,+#_633733813a924eb281c219fba0055655p@chr10:68711399..68711404, +
5.61e-30FFCP PHASE2:Mm9::chr1:138842776..138842782,-#_633733813a924eb281c219fba0055655p@chr1:138842776..138842782, -
5.61e-30FFCP PHASE2:Mm9::chr9:110231661..110231693,+#_633733813a924eb281c219fba0055655p@chr9:110231661..110231693, +
5.61e-30FFCP PHASE1:Mm9::chr16:58638504..58638523,-#_633733813a924eb281c219fba0055655p1@E330017A01Rik










Property "Property value" (as page type) with input value "UBPROP:0000001 "Either of paired female reproductive organs involved in production of ova and female sex hormones.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Female reproductive organ.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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