UBERON:0000019: Difference between revisions
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|located_in= | |located_in= | ||
|name=camera-type eye | |name=camera-type eye | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0004088 | |part_of=UBERON:0004088 | ||
Latest revision as of 17:04, 12 September 2014
| Name: | camera-type eye | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid // " [GO:0043010, UBERON:cjm] | ||
| Xrefs: |
| ||
| Synonyms: |
"camera-type eye plus associated structures" RELATED [] "eye" BROAD [FMA:54448] "orbital part of face" EXACT [FMA:54448] "orbital region" EXACT [FMA:54448] "regio orbitalis" EXACT [FMA:54448, FMA:TA] "vertebrate eye" NARROW [] | ||
| Comments: | AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this | ||
| Alt_id: | UBERON:FMA_12513-MIAA_0000283-XAO_0000181 | ||
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000047(simple eye),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0015212(lateral structure) |
|---|---|
| develops_from: | UBERON:0003072(optic cup) |
| part_of: | UBERON:0004088(ocular region) |
Children
| derives from: | FF:0010054 (human eye - fetal sample) |
|---|---|
| part of: | UBERON:0002203 (vasculature of eye),UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003314 (eye mesenchyme),UBERON:0004277 (eye muscle),UBERON:0005427 (corneal primordium),UBERON:0005606 (hyaloid cavity),UBERON:0005908 (conjunctival sac),UBERON:0005969 (reticulum trabeculare),UBERON:0006311 (chamber of eyeball),UBERON:0006312 (ocular refractive media),UBERON:0010230 (eyeball of camera-type eye),UBERON:0010409 (eye surface),UBERON:0015808 (eye epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000019 (camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4 | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4 | p1@Mir184 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_626a90ad5c2d1952a7320859cfd962b4 | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_626a90ad5c2d1952a7320859cfd962b4 | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_626a90ad5c2d1952a7320859cfd962b4 | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_626a90ad5c2d1952a7320859cfd962b4 | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_626a90ad5c2d1952a7320859cfd962b4 | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_626a90ad5c2d1952a7320859cfd962b4 | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_626a90ad5c2d1952a7320859cfd962b4 | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_626a90ad5c2d1952a7320859cfd962b4 | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_626a90ad5c2d1952a7320859cfd962b4 | p1@Mir184 |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_3415ab3584829ab0db6dca4ced299645 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_3415ab3584829ab0db6dca4ced299645 | p3@LOC100504989, p3@Timeless |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abaccc | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_60ca0a6a119ac7220af09706e0abaccc | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abaccc | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_60ca0a6a119ac7220af09706e0abaccc | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849e | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_75d1a099f83f5854bc5de7b03ca8849e | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_46b679f70813f237f6c8f4c5c2c14211 | p2@Cryga |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_46b679f70813f237f6c8f4c5c2c14211 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_46b679f70813f237f6c8f4c5c2c14211 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65149656..65149674,-#_46b679f70813f237f6c8f4c5c2c14211 | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668480..127668491,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr7:28282354..28282365,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr7:28282354..28282365, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668686..127668697,+#_46b679f70813f237f6c8f4c5c2c14211 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_46b679f70813f237f6c8f4c5c2c14211 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:93761330..93761358,-#_46b679f70813f237f6c8f4c5c2c14211 | p1@Gm4792 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582172..77582183,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_46b679f70813f237f6c8f4c5c2c14211 | p3@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:77532270..77532280,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_46b679f70813f237f6c8f4c5c2c14211 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_46b679f70813f237f6c8f4c5c2c14211 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:85969237..85969247,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr6:85969237..85969247, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_46b679f70813f237f6c8f4c5c2c14211 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668799..127668810,+#_46b679f70813f237f6c8f4c5c2c14211 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112681470..112681483,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112681470..112681483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112691047..112691066,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112691047..112691066, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr8:77582194..77582219,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690729..112690741,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112690729..112690741, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112696408..112696421,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_46b679f70813f237f6c8f4c5c2c14211 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_46b679f70813f237f6c8f4c5c2c14211 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr16:56204438..56204451,+#_46b679f70813f237f6c8f4c5c2c14211 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_46b679f70813f237f6c8f4c5c2c14211 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112696408..112696421,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112696408..112696421, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113504891..113504916,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112675556..112675574,-#_46b679f70813f237f6c8f4c5c2c14211 | p@chr5:112675556..112675574, - |
Property "Property value" (as page type) with input value "UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
