DOID:3350: Difference between revisions
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|located_in= | |located_in= | ||
|name=mesenchymal cell neoplasm | |name=mesenchymal cell neoplasm | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 16:50, 12 September 2014
| Name: | mesenchymal cell neoplasm | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "A cell type cancer that has_material_basis_in abnormally proliferating cells derived_from embryonic connective tissue that is capable of developing into connective tissue, such as bone, and cartilage, the lymphatic system, and the circulatory system." [url:http://en.wikipedia.org/wiki/Mesenchymal_cell, url:http://www.ncbi.nlm.nih.gov/books/NBK9549/] | ||
| Xrefs: |
| ||
| Synonyms: |
"benign miscellaneous mesenchymal tumor" EXACT [] "mesenchymal tumor" EXACT [NCI2004_11_17:C7059] | ||
| Alt_id: | DOID:1630 |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0050687(cell type cancer) |
|---|
Children
| is a: | FF:10778-110G4 (hepatic mesenchymal tumor cell line:LI90),DOID:6193 (epithelioid sarcoma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10443-106F2 (epithelioid sarcoma cell line:HS-ES-1)
- 10495-107B9 (epithelioid sarcoma cell line:HS-ES-2R)
- 10778-110G4 (hepatic mesenchymal tumor cell line:LI90)
Mouse (Mus musculus)
- 10443-106F2 (epithelioid sarcoma cell line:HS-ES-1)
- 10495-107B9 (epithelioid sarcoma cell line:HS-ES-2R)
- 10778-110G4 (hepatic mesenchymal tumor cell line:LI90)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3350 (mesenchymal cell neoplasm), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr4:183750430..183750442, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:183750430..183750442,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr4:183750430..183750442, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr17:8774055..8774068, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr17:8774055..8774068,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr17:8774055..8774068, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr10:125605888..125605891, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr1:240319887..240319892, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:125605888..125605891,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr10:125605888..125605891, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr8:69961533..69961540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:69961533..69961540,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr8:69961533..69961540, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr19:54545670..54545677, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr1:240319887..240319892,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr1:240319887..240319892, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr2:178887106..178887129, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr4:183750467..183750481, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:183750467..183750481,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr4:183750467..183750481, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:178887106..178887129,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr2:178887106..178887129, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170472..36170478, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr6:142429681..142429688, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:54545670..54545677,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr19:54545670..54545677, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr6:142429681..142429688,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr6:142429681..142429688, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:40101288..40101291, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr8:69961543..69961549, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:69961543..69961549,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr8:69961543..69961549, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr7:157478953..157478987, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:36170472..36170478,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170472..36170478, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr19:54598154..54598171, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170751..36170761, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr9:26171424..26171462, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr9:26171424..26171462,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr9:26171424..26171462, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:40101288..40101291,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:40101288..40101291, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr7:157478953..157478987,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr7:157478953..157478987, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0 | p26@FGF1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr18:43282521..43282533, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr19:54598154..54598171,+#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr19:54598154..54598171, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:142023729..142023736,-#_df5ec08eec555e21ab61eb08c403e7a0 | p26@FGF1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr18:43282521..43282533,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr18:43282521..43282533, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:36170751..36170761,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170751..36170761, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170775..36170785, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr13:27202938..27202944, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr13:27202938..27202944,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr13:27202938..27202944, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:36170775..36170785,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr3:36170775..36170785, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr21:32526965..32526979, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr21:32526965..32526979,-#_df5ec08eec555e21ab61eb08c403e7a0 | p@chr21:32526965..32526979, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545780..54545792, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545613..54545621, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63faf | p26@ZAK |
| 2.74e-50 | FFCP PHASE2:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr21:32529607..32529639, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr21:32529607..32529639,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr21:32529607..32529639, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:173955327..173955334,+#_e5c70c09fee4e50b357ccf913ce63faf | p26@ZAK |
| 2.74e-50 | FFCP PHASE2:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr11:89114727..89114730, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr11:89114727..89114730,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr11:89114727..89114730, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:100957024..100957046, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr17:8774126..8774143, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr17:8774126..8774143,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr17:8774126..8774143, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr1:240320047..240320058, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr11:106426627..106426632, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr11:106426627..106426632,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr11:106426627..106426632, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr3:153575775..153575789, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:100957024..100957046,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:100957024..100957046, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545692..54545704, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:240320047..240320058,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr1:240320047..240320058, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:153575775..153575789,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr3:153575775..153575789, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63faf | p2@BC032032 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:54545692..54545704,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545692..54545704, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:69961573..69961578, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:69961573..69961578,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:69961573..69961578, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63faf | p24@STAT3 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr17:40477088..40477101,-#_e5c70c09fee4e50b357ccf913ce63faf | p24@STAT3 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr7:80929708..80929725, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54600897..54600899, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:233860255..233860261,+#_e5c70c09fee4e50b357ccf913ce63faf | p2@BC032032 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr18:56495029..56495073, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:56495029..56495073,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr18:56495029..56495073, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:54545780..54545792,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545780..54545792, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:80929708..80929725,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr7:80929708..80929725, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:41559667..41559679, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:54600897..54600899,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54600897..54600899, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:41559667..41559679,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr8:41559667..41559679, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr2:172271476..172271479, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr2:172271476..172271479,+#_e5c70c09fee4e50b357ccf913ce63faf | p@chr2:172271476..172271479, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:54545613..54545621,-#_e5c70c09fee4e50b357ccf913ce63faf | p@chr19:54545613..54545621, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr19:38182936..38182940, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr19:38182936..38182940,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr19:38182936..38182940, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr13:38275506..38275512, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr21:16426559..16426566, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr21:16426559..16426566,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr21:16426559..16426566, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr9:21549553..21549570, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:21549553..21549570,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr9:21549553..21549570, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr13:38275506..38275512,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr13:38275506..38275512, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr13:38320384..38320418, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr18:56494810..56494816, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:56494810..56494816,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr18:56494810..56494816, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr13:38320384..38320418,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr13:38320384..38320418, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01b | p@chr18:61501808..61501812, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr6:2938437..2938442, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr18:61501808..61501812,+#_7e38c539c176e272e62a0acbaf07d01b | p@chr18:61501808..61501812, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01b | p@chrX:135342362..135342373, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:135342362..135342373,+#_7e38c539c176e272e62a0acbaf07d01b | p@chrX:135342362..135342373, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr5:57104911..57104918, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr5:57104911..57104918,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr5:57104911..57104918, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:2938437..2938442,-#_7e38c539c176e272e62a0acbaf07d01b | p@chr6:2938437..2938442, - |
