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DOID:200: Difference between revisions

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|located_in=
|located_in=
|name=giant cell tumor
|name=giant cell tumor
|namespace=disease_ontology
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:49, 12 September 2014

Name:giant cell tumor
Namespace:FANTOM
Xrefs:
links:

MSH:D005870
NCI:C3055
NCI:C7069
SNOMEDCT_2010_1_31:115238001
SNOMEDCT_2010_1_31:134300001
SNOMEDCT_2010_1_31:189890001
SNOMEDCT_2010_1_31:189893004
SNOMEDCT_2010_1_31:443790001

UMLS_CUI:C0017525
Synonyms: "Giant cell neoplasm" EXACT [NCI2004_11_17:C7069]
"Giant cell tumor (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:115238001]
"Giant cell tumor (qualifier value)" EXACT [SNOMEDCT_2005_07_31:134300001]
"Giant cell tumor NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189893004]
"Giant cell tumors" RELATED []
"Giant cell tumors (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189890001]
"tumor of the Giant cell" EXACT [NCI2004_11_17:C3055]

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:DOID:201(connective tissue cancer)



Children


is a:DOID:4305 (bone giant cell tumor)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:200 (giant cell tumor), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_dcd7f6602f262a9fd1ffb8a0b46c943dp1@CU687665
1.55e-98FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_dcd7f6602f262a9fd1ffb8a0b46c943dp1@CU687665
1.55e-98FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_dcd7f6602f262a9fd1ffb8a0b46c943dp@chr11:101742272..101742276, -
1.55e-98FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_dcd7f6602f262a9fd1ffb8a0b46c943dp@chr11:101742272..101742276, -
2.74e-50FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_78b2229353a5c30db348b2c0cc1746b5p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_78b2229353a5c30db348b2c0cc1746b5p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_78b2229353a5c30db348b2c0cc1746b5p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_78b2229353a5c30db348b2c0cc1746b5p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_78b2229353a5c30db348b2c0cc1746b5p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_78b2229353a5c30db348b2c0cc1746b5p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_78b2229353a5c30db348b2c0cc1746b5p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_78b2229353a5c30db348b2c0cc1746b5p@chr5:14034644..14034647, -
4.52e-50FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:106393655..106393659, +
4.52e-50FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:106393655..106393659, +
4.52e-50FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_5d8d61470cf3cabf65eec21b0c510177p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_5d8d61470cf3cabf65eec21b0c510177p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_5d8d61470cf3cabf65eec21b0c510177p@chr4:34480309..34480321, -
4.52e-50FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_5d8d61470cf3cabf65eec21b0c510177p@chr4:34480309..34480321, -
3.61e-34FFCP PHASE2:Hg19::chr4:177796841..177796851,+#_c585dfebaa30e4173b0b989854b79d54p1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr4:177796841..177796851,+#_c585dfebaa30e4173b0b989854b79d54p1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr7:119353807..119353812,-#_c585dfebaa30e4173b0b989854b79d54p@chr7:119353807..119353812, -
3.61e-34FFCP PHASE2:Hg19::chr7:119353807..119353812,-#_c585dfebaa30e4173b0b989854b79d54p@chr7:119353807..119353812, -
5.04e-34FFCP PHASE2:Hg19::chr10:37004821..37004852,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr10:37004821..37004852, -
5.04e-34FFCP PHASE1:Hg19::chr10:37004821..37004852,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr10:37004821..37004852, -
5.04e-34FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_c78b32f54ed9522015ea17b24b3bc5bep@chr8:15939682..15939688, +
5.04e-34FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_c78b32f54ed9522015ea17b24b3bc5bep@chr8:15939682..15939688, +
5.04e-34FFCP PHASE2:Hg19::chrX:132231123..132231140,-#_c78b32f54ed9522015ea17b24b3bc5bep1@USP26
5.04e-34FFCP PHASE1:Hg19::chrX:132231123..132231140,-#_c78b32f54ed9522015ea17b24b3bc5bep1@USP26
5.04e-34FFCP PHASE2:Hg19::chr4:46093758..46093781,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr4:46093758..46093781, -
5.04e-34FFCP PHASE1:Hg19::chr4:46093758..46093781,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr4:46093758..46093781, -
7.05e-34FFCP PHASE2:Hg19::chrX:89462083..89462089,+#_4945b1fdc2aba801a195943b0eda2235p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE1:Hg19::chrX:89462083..89462089,+#_4945b1fdc2aba801a195943b0eda2235p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE2:Hg19::chr11:84019133..84019135,-#_4945b1fdc2aba801a195943b0eda2235p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE1:Hg19::chr11:84019133..84019135,-#_4945b1fdc2aba801a195943b0eda2235p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_4945b1fdc2aba801a195943b0eda2235p@chr6:155427848..155427862, +
7.05e-34FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_4945b1fdc2aba801a195943b0eda2235p@chr6:155427848..155427862, +
5.5e-31FFCP PHASE2:Hg19::chr3:106556598..106556609,-#_5f0da8db6f3560a4087c58a8869220aap@chr3:106556598..106556609, -
5.5e-31FFCP PHASE1:Hg19::chr3:106556598..106556609,-#_5f0da8db6f3560a4087c58a8869220aap@chr3:106556598..106556609, -
7.1e-28FFCP PHASE1:Hg19::chr6:68597008..68597030,-#_bf0c95e8677122010e91311f39fe2a34p@chr6:68597008..68597030, -
7.1e-28FFCP PHASE2:Hg19::chr6:68597008..68597030,-#_bf0c95e8677122010e91311f39fe2a34p@chr6:68597008..68597030, -
4.32e-26FFCP PHASE2:Hg19::chr5:27723923..27723927,-#_9da90f13fcbb8695972d6a23d843c924p@chr5:27723923..27723927, -
4.32e-26FFCP PHASE1:Hg19::chr5:27723923..27723927,-#_9da90f13fcbb8695972d6a23d843c924p@chr5:27723923..27723927, -
4.32e-26FFCP PHASE2:Hg19::chr11:81549961..81549965,-#_9da90f13fcbb8695972d6a23d843c924p@chr11:81549961..81549965, -
4.32e-26FFCP PHASE1:Hg19::chr11:81549961..81549965,-#_9da90f13fcbb8695972d6a23d843c924p@chr11:81549961..81549965, -
5.56e-26FFCP PHASE2:Hg19::chr5:167315847..167315852,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:167315847..167315852, +
5.56e-26FFCP PHASE1:Hg19::chr5:167315847..167315852,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:167315847..167315852, +
5.56e-26FFCP PHASE2:Hg19::chrX:89176902..89176913,+#_9fe15baf940d9426e1206b9e93ca2effp1@TGIF2LX
5.56e-26FFCP PHASE1:Hg19::chrX:89176902..89176913,+#_9fe15baf940d9426e1206b9e93ca2effp1@TGIF2LX
5.56e-26FFCP PHASE2:Hg19::chrX:124347061..124347063,-#_9fe15baf940d9426e1206b9e93ca2effp@chrX:124347061..124347063, -
5.56e-26FFCP PHASE1:Hg19::chrX:124347061..124347063,-#_9fe15baf940d9426e1206b9e93ca2effp@chrX:124347061..124347063, -
5.56e-26FFCP PHASE2:Hg19::chrX:132352373..132352384,-#_9fe15baf940d9426e1206b9e93ca2effp1@TFDP3
5.56e-26FFCP PHASE1:Hg19::chrX:132352373..132352384,-#_9fe15baf940d9426e1206b9e93ca2effp1@TFDP3
5.56e-26FFCP PHASE2:Hg19::chr5:153673183..153673186,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:153673183..153673186, +
5.56e-26FFCP PHASE1:Hg19::chr5:153673183..153673186,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:153673183..153673186, +
5.56e-26FFCP PHASE2:Hg19::chr4:189864018..189864037,+#_9fe15baf940d9426e1206b9e93ca2effp@chr4:189864018..189864037, +
5.56e-26FFCP PHASE1:Hg19::chr4:189864018..189864037,+#_9fe15baf940d9426e1206b9e93ca2effp@chr4:189864018..189864037, +
9.18e-26FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_5069109a8ee287f6021550185b2a68cap@chr7:12997533..12997536, +
9.18e-26FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_5069109a8ee287f6021550185b2a68cap@chr7:12997533..12997536, +
9.18e-26FFCP PHASE1:Hg19::chr18:14946224..14946236,+#_5069109a8ee287f6021550185b2a68cap1@FLJ44255
9.18e-26FFCP PHASE2:Hg19::chr18:14946224..14946236,+#_5069109a8ee287f6021550185b2a68cap1@FLJ44255
1.12e-25FFCP PHASE2:Hg19::chrX:55246809..55246816,+#_d8ce887e174223df6d4aea4afda6acb9p3@PAGE5
1.12e-25FFCP PHASE1:Hg19::chrX:55246809..55246816,+#_d8ce887e174223df6d4aea4afda6acb9p3@PAGE5
4.89e-23FFCP PHASE2:Hg19::chrX:55246818..55246829,+#_dbefc90921efed7eab894b584f2e7ac1p2@PAGE5
4.89e-23FFCP PHASE1:Hg19::chrX:55246818..55246829,+#_dbefc90921efed7eab894b584f2e7ac1p2@PAGE5
3.11e-21FFCP PHASE2:Hg19::chr5:27742047..27742052,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr5:27742047..27742052, -
3.11e-21FFCP PHASE1:Hg19::chr5:27742047..27742052,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr5:27742047..27742052, -
3.11e-21FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr8:119905427..119905438,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr8:119905427..119905438, -
3.11e-21FFCP PHASE2:Hg19::chr8:119905427..119905438,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr8:119905427..119905438, -
3.81e-21FFCP PHASE2:Hg19::chr19:9811101..9811112,-#_6feaa4e397889010a59b92e1a8edf062p3@ZNF812
3.81e-21FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_6feaa4e397889010a59b92e1a8edf062p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_6feaa4e397889010a59b92e1a8edf062p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE2:Hg19::chr5:135378750..135378757,+#_6feaa4e397889010a59b92e1a8edf062p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE1:Hg19::chr5:135378750..135378757,+#_6feaa4e397889010a59b92e1a8edf062p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE2:Hg19::chr2:145815206..145815208,+#_6feaa4e397889010a59b92e1a8edf062p@chr2:145815206..145815208, +
3.81e-21FFCP PHASE1:Hg19::chr2:145815206..145815208,+#_6feaa4e397889010a59b92e1a8edf062p@chr2:145815206..145815208, +
3.81e-21FFCP PHASE2:Hg19::chr13:87732242..87732246,-#_6feaa4e397889010a59b92e1a8edf062p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr13:87732242..87732246,-#_6feaa4e397889010a59b92e1a8edf062p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr19:9811101..9811112,-#_6feaa4e397889010a59b92e1a8edf062p3@ZNF812
4.66e-21FFCP PHASE2:Hg19::chrX:140336680..140336697,-#_11a3bd6589c95cd3c47a62499b2050d9p2@SPANXC
4.66e-21FFCP PHASE1:Hg19::chrX:140336680..140336697,-#_11a3bd6589c95cd3c47a62499b2050d9p2@SPANXC
5.7e-21FFCP PHASE1:Hg19::chr2:33171944..33171945,+#_a2e3fd944c35e3d79cdef2ee5ed5591cp15@LTBP1
5.7e-21FFCP PHASE2:Hg19::chr5:142000787..142000807,-#_a2e3fd944c35e3d79cdef2ee5ed5591cp@chr5:142000787..142000807, -
5.7e-21FFCP PHASE1:Hg19::chr5:142000787..142000807,-#_a2e3fd944c35e3d79cdef2ee5ed5591cp@chr5:142000787..142000807, -
5.7e-21FFCP PHASE2:Hg19::chr2:33171944..33171945,+#_a2e3fd944c35e3d79cdef2ee5ed5591cp15@LTBP1
6.96e-21FFCP PHASE2:Hg19::chr3:60761167..60761179,+#_21914a77f540c28e33f1a8347c84e8a0p@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr3:60761167..60761179,+#_21914a77f540c28e33f1a8347c84e8a0p@chr3:60761167..60761179, +
6.96e-21FFCP PHASE1:Hg19::chr8:76774227..76774234,+#_21914a77f540c28e33f1a8347c84e8a0p@chr8:76774227..76774234, +
6.96e-21FFCP PHASE2:Hg19::chr8:76774227..76774234,+#_21914a77f540c28e33f1a8347c84e8a0p@chr8:76774227..76774234, +
6.96e-21FFCP PHASE1:Hg19::chr18:63273310..63273317,+#_21914a77f540c28e33f1a8347c84e8a0p@chr18:63273310..63273317, +
6.96e-21FFCP PHASE2:Hg19::chr11:12061317..12061323,-#_21914a77f540c28e33f1a8347c84e8a0p@chr11:12061317..12061323, -
6.96e-21FFCP PHASE1:Hg19::chr11:12061317..12061323,-#_21914a77f540c28e33f1a8347c84e8a0p@chr11:12061317..12061323, -
6.96e-21FFCP PHASE2:Hg19::chr5:81611412..81611423,+#_21914a77f540c28e33f1a8347c84e8a0p@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr18:63273310..63273317,+#_21914a77f540c28e33f1a8347c84e8a0p@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr5:81611412..81611423,+#_21914a77f540c28e33f1a8347c84e8a0p@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr11:28792916..28792929,+#_21914a77f540c28e33f1a8347c84e8a0p@chr11:28792916..28792929, +
6.96e-21FFCP PHASE1:Hg19::chr11:28792916..28792929,+#_21914a77f540c28e33f1a8347c84e8a0p@chr11:28792916..28792929, +

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