CL:0002614: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=neuron of the substantia nigra | |name=neuron of the substantia nigra | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T07:48:42Z | |obo_creation_date=2011-03-06T07:48:42Z | ||
|part_of=UBERON:0002038 | |part_of=UBERON:0002038 | ||
Latest revision as of 16:45, 12 September 2014
| Name: | neuron of the substantia nigra |
|---|---|
| Namespace: | FANTOM |
| Definition: | "A neuron of the substantia nigra." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T07:48:42Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000117(CNS neuron (sensu Vertebrata)) |
|---|---|
| part_of: | UBERON:0002038(substantia nigra) |
Children
| derives from: | FF:0000208 (mouse neuron of the substantia nigra sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Mouse (Mus musculus)
- 11489-119E4 (Mouse Neurons - substantia nigra, donor4)
- 11490-119E5 (Mouse Neurons - substantia nigra, donor5)
- 11770-123I6 (Mouse Neurons - substantia nigra, donor6)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002614 (neuron of the substantia nigra), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.97e-44 | FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88 | p@chr4:134073493..134073502, - |
| 8.97e-44 | FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_82c7d7389bd89ac945d686e54b1bbf88 | p@chr4:134073493..134073502, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259a | p@chr2:25324505..25324513, + |
| 1.7e-39 | FFCP PHASE2:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259a | p@chr2:25324524..25324534, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr2:25324505..25324513,+#_7acb5c4a8a7b93134c8b37d6dfc2259a | p@chr2:25324505..25324513, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr2:25324524..25324534,+#_7acb5c4a8a7b93134c8b37d6dfc2259a | p@chr2:25324524..25324534, + |
| 2.09e-38 | FFCP PHASE1:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5 | p@chr1:68827407..68827408, - |
| 2.09e-38 | FFCP PHASE2:Mm9::chr1:68827407..68827408,-#_b75a72414271c2155623f119c5a10ff5 | p@chr1:68827407..68827408, - |
| 8.86e-38 | FFCP PHASE1:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5 | p@chr9:120089539..120089582, - |
| 8.86e-38 | FFCP PHASE2:Mm9::chr9:120089539..120089582,-#_478614e1cfb3bdcc35b6cc4f57e477a5 | p@chr9:120089539..120089582, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563 | p@chr14:54813640..54813649, + |
| 1.31e-33 | FFCP PHASE1:Mm9::chr14:54813640..54813649,+#_1e53429c7285414ec866ab4f1b0a2563 | p@chr14:54813640..54813649, + |
| 3.61e-33 | FFCP PHASE1:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2 | p@chr19:40804786..40804795, - |
| 3.61e-33 | FFCP PHASE2:Mm9::chr19:40804786..40804795,-#_1ba050d63fa3c91587af5d61fddb7bf2 | p@chr19:40804786..40804795, - |
| 5.97e-33 | FFCP PHASE1:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22d | p@chr15:59373755..59373758, - |
| 5.97e-33 | FFCP PHASE2:Mm9::chr15:59373755..59373758,-#_fd9445045005f976f866c795585bb22d | p@chr15:59373755..59373758, - |
| 1.27e-32 | FFCP PHASE1:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23 | p@chr3:95023652..95023663, - |
| 1.27e-32 | FFCP PHASE2:Mm9::chr3:95023652..95023663,-#_7c2d0aed369516d03c8f91596733df23 | p@chr3:95023652..95023663, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0c | p1@Nps |
| 5.61e-30 | FFCP PHASE2:Mm9::chr7:142460262..142460264,+#_4b92c3bed0e6c78cf451eb7e9515de0c | p1@Nps |
| 7.14e-30 | FFCP PHASE2:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368 | p@chr8:74243126..74243137, - |
| 7.14e-30 | FFCP PHASE1:Mm9::chr8:74243126..74243137,-#_5152984740a602872710bfe8fa74a368 | p@chr8:74243126..74243137, - |
| 7.89e-30 | FFCP PHASE1:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54ed | p14@Pitx2 |
| 7.89e-30 | FFCP PHASE2:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54ed | p13@A330023F24Rik |
| 7.89e-30 | FFCP PHASE2:Mm9::chr3:128902824..128902831,+#_069f81120365ba95d9cdcb3528bd54ed | p14@Pitx2 |
| 7.89e-30 | FFCP PHASE1:Mm9::chr1:196844789..196844794,+#_069f81120365ba95d9cdcb3528bd54ed | p13@A330023F24Rik |
| 1.54e-29 | FFCP PHASE2:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbe | p@chr9:120088982..120088991, + |
| 1.54e-29 | FFCP PHASE1:Mm9::chr9:120088982..120088991,+#_4e81800036c5b441df7f988ccb506fbe | p@chr9:120088982..120088991, + |
| 2.74e-29 | FFCP PHASE2:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5f | p@chr4:98861314..98861320, - |
| 2.74e-29 | FFCP PHASE1:Mm9::chr4:98861314..98861320,-#_2dc28069e5b1470fd3641891d9d8fd5f | p@chr4:98861314..98861320, - |
| 1.68e-27 | FFCP PHASE1:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fe | p7@Apod, p7@LOC100047583 |
| 1.68e-27 | FFCP PHASE2:Mm9::chr16:31311157..31311167,-#_db2558b3b495c493edf7f7a32cae22fe | p7@Apod, p7@LOC100047583 |
| 1.68e-27 | FFCP PHASE1:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fe | p@chr2:164317532..164317534, + |
| 1.68e-27 | FFCP PHASE2:Mm9::chr2:164317532..164317534,+#_db2558b3b495c493edf7f7a32cae22fe | p@chr2:164317532..164317534, + |
| 3.8e-27 | FFCP PHASE2:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338 | p@chr18:82753999..82754008, + |
| 3.8e-27 | FFCP PHASE1:Mm9::chr18:82753999..82754008,+#_453032cf80b28e0df540a376578f7338 | p@chr18:82753999..82754008, + |
| 4.66e-27 | FFCP PHASE2:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cb | p@chr9:25062848..25062873, + |
| 4.66e-27 | FFCP PHASE1:Mm9::chr9:25062848..25062873,+#_1aef14bea39a6f7a459ca49bd6f0b4cb | p@chr9:25062848..25062873, + |
| 5.7e-27 | FFCP PHASE2:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081e | p12@Itgb4 |
| 5.7e-27 | FFCP PHASE1:Mm9::chr11:115854417..115854426,+#_0f1b43787c89336fdc0f1504faee081e | p12@Itgb4 |
| 1.05e-26 | FFCP PHASE2:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2 | p@chrX:61750178..61750185, + |
| 1.05e-26 | FFCP PHASE1:Mm9::chrX:61750178..61750185,+#_93d5d1aad6b6776c096dc50d75c2efd2 | p@chrX:61750178..61750185, + |
| 2.34e-26 | FFCP PHASE1:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77 | p2@Wdr31 |
| 2.34e-26 | FFCP PHASE2:Mm9::chr4:62131958..62131966,-#_95d75c5a14c71825cb522ee0f0858e77 | p2@Wdr31 |
| 6.49e-25 | FFCP PHASE2:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aa | p11@Itgb4 |
| 6.49e-25 | FFCP PHASE1:Mm9::chr11:115854376..115854386,+#_3ac8d0305e1f57fdb55306db71b7b9aa | p11@Itgb4 |
| 9.4e-25 | FFCP PHASE2:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032ce | p@chr9:120088834..120088845, + |
| 9.4e-25 | FFCP PHASE1:Mm9::chr9:120088834..120088845,+#_d9fe434612a32b3a4e2946cabf6032ce | p@chr9:120088834..120088845, + |
| 1.13e-24 | FFCP PHASE1:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468 | p@chr3:88022163..88022168, + |
| 1.13e-24 | FFCP PHASE2:Mm9::chr3:88022163..88022168,+#_4601bd3be404a9317a681c6dc4645468 | p@chr3:88022163..88022168, + |
| 1.36e-24 | FFCP PHASE2:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81 | p@chr9:44961019..44961022, + |
| 1.36e-24 | FFCP PHASE1:Mm9::chr9:44961019..44961022,+#_cc62f635adad73f2b33aa24f12884d81 | p@chr9:44961019..44961022, + |
| 1.63e-24 | FFCP PHASE2:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26 | p16@Slc17a6 |
| 1.63e-24 | FFCP PHASE1:Mm9::chr7:58877682..58877687,+#_df53b89973e3ab72aeb49408ce81fb26 | p16@Slc17a6 |
| 1.74e-24 | FFCP PHASE2:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890 | p@chr11:36917853..36917855, - |
| 1.74e-24 | FFCP PHASE1:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890 | p@chr8:108091532..108091548, - |
| 1.74e-24 | FFCP PHASE2:Mm9::chr8:108091532..108091548,-#_65fedb7d609c0ae30034691bf3c78890 | p@chr8:108091532..108091548, - |
| 1.74e-24 | FFCP PHASE1:Mm9::chr11:36917853..36917855,-#_65fedb7d609c0ae30034691bf3c78890 | p@chr11:36917853..36917855, - |
| 3.91e-24 | FFCP PHASE2:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69a | p@chr18:82754158..82754162, + |
| 3.91e-24 | FFCP PHASE1:Mm9::chr18:82754158..82754162,+#_273c92222eb6bbed2e847727bdaad69a | p@chr18:82754158..82754162, + |
| 6.68e-24 | FFCP PHASE1:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9da | p@chrX:133372432..133372442, - |
| 6.68e-24 | FFCP PHASE2:Mm9::chrX:133372432..133372442,-#_e57a83f769f300236080cc30db91c9da | p@chrX:133372432..133372442, - |
| 8.72e-24 | FFCP PHASE1:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282 | p10@Glra1 |
| 8.72e-24 | FFCP PHASE2:Mm9::chr11:55421712..55421719,-#_2270eaff4369786a7c2056bdab4fb282 | p10@Glra1 |
| 1.19e-23 | FFCP PHASE1:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6e | p8@Ptgds |
| 1.19e-23 | FFCP PHASE2:Mm9::chr2:25324631..25324642,-#_f5abc370b6d3116bea4eee6a3593ef6e | p8@Ptgds |
| 1.42e-23 | FFCP PHASE2:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9 | p@chr5:27925423..27925425, + |
| 1.42e-23 | FFCP PHASE1:Mm9::chr5:27925423..27925425,+#_9145047e9bde556153700b24ed5a8df9 | p@chr5:27925423..27925425, + |
| 1.69e-23 | FFCP PHASE1:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329 | p@chr4:132999231..132999250, + |
| 1.69e-23 | FFCP PHASE2:Mm9::chr4:132999231..132999250,+#_34e39475d2601989a83f0fa3e928d329 | p@chr4:132999231..132999250, + |
| 2.38e-23 | FFCP PHASE1:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802cc | p@chr9:120089048..120089059, + |
| 2.38e-23 | FFCP PHASE2:Mm9::chr9:120089048..120089059,+#_484d5b3b72c115e7e8e6bc6b511802cc | p@chr9:120089048..120089059, + |
| 3.35e-23 | FFCP PHASE1:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7 | p7@Kcnj16 |
| 3.35e-23 | FFCP PHASE2:Mm9::chr11:110858858..110858866,+#_ffe0c40c5e95a15154563767f68e6cf7 | p7@Kcnj16 |
| 3.98e-23 | FFCP PHASE2:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037 | p@chr1:183734229..183734244, + |
| 3.98e-23 | FFCP PHASE1:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037 | p2@Chrna6 |
| 3.98e-23 | FFCP PHASE2:Mm9::chr8:28524409..28524418,-#_ec9de59e0e3fcfb4c6a3509746805037 | p2@Chrna6 |
| 3.98e-23 | FFCP PHASE1:Mm9::chr1:183734229..183734244,+#_ec9de59e0e3fcfb4c6a3509746805037 | p@chr1:183734229..183734244, + |
| 4.72e-23 | FFCP PHASE1:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95ed | p9@Scrn1 |
| 4.72e-23 | FFCP PHASE2:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95ed | p24@Gas7 |
| 4.72e-23 | FFCP PHASE1:Mm9::chr11:67466050..67466065,+#_7790cd09adbe43109539aa3bb9ba95ed | p24@Gas7 |
| 4.72e-23 | FFCP PHASE2:Mm9::chr6:54516272..54516275,-#_7790cd09adbe43109539aa3bb9ba95ed | p9@Scrn1 |
| 7.86e-23 | FFCP PHASE2:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84 | p4@1500009C09Rik |
| 7.86e-23 | FFCP PHASE1:Mm9::chr15:82086756..82086763,+#_5c73b0f36be345a43e4384d4139ffb84 | p4@1500009C09Rik |
| 1.1e-22 | FFCP PHASE2:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10e | p7@BC003331 |
| 1.1e-22 | FFCP PHASE1:Mm9::chr1:152239838..152239843,-#_2d5302969db7c638af2f8dae3f3bc10e | p7@BC003331 |
| 1.31e-22 | FFCP PHASE1:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4f | p@chr13:25361035..25361082, - |
| 1.31e-22 | FFCP PHASE2:Mm9::chr13:25361035..25361082,-#_24ca8d7c958358d6988c117586c5ce4f | p@chr13:25361035..25361082, - |
| 1.55e-22 | FFCP PHASE1:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57 | p@chr9:120088783..120088795, + |
| 1.55e-22 | FFCP PHASE2:Mm9::chr9:120088783..120088795,+#_6ca6f00b7a67f511bab93c571ded7e57 | p@chr9:120088783..120088795, + |
| 1.83e-22 | FFCP PHASE2:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77 | p15@Gad1 |
| 1.83e-22 | FFCP PHASE1:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77 | p@chrX:132335433..132335444, + |
| 1.83e-22 | FFCP PHASE2:Mm9::chrX:132335433..132335444,+#_fa0ff9e8300f786dd22c1079c2e0ff77 | p@chrX:132335433..132335444, + |
| 1.83e-22 | FFCP PHASE1:Mm9::chr2:70401593..70401604,+#_fa0ff9e8300f786dd22c1079c2e0ff77 | p15@Gad1 |
| 3.58e-22 | FFCP PHASE1:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296a | p7@Kcnip4 |
| 3.58e-22 | FFCP PHASE2:Mm9::chr5:48991226..48991239,-#_b88c63b8faf09a493cf43ceab403296a | p7@Kcnip4 |
| 4.23e-22 | FFCP PHASE1:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161 | p4@ENSMUST00000171323, p4@uc011zcg.1 |
| 4.23e-22 | FFCP PHASE2:Mm9::chr13:83869274..83869285,-#_91d5315baa446a3cdfad90aa97fd2161 | p4@ENSMUST00000171323, p4@uc011zcg.1 |
| 4.98e-22 | FFCP PHASE1:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80 | p@chr6:58856244..58856255, - |
| 4.98e-22 | FFCP PHASE2:Mm9::chr6:58856244..58856255,-#_44673e2fb72ed22369ba62a754008f80 | p@chr6:58856244..58856255, - |
